Wall clock time and date at job start Tue Mar 31 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 C 1.53005 * 109.47299 * 240.00335 * 2 1 3 5 5 N 1.46505 * 109.47530 * 119.99768 * 2 1 3 6 6 N 1.40067 * 126.09352 * 0.02911 * 5 2 1 7 7 C 1.30857 * 108.41976 * 179.97438 * 6 5 2 8 8 C 1.39696 * 108.45734 * 0.26599 * 7 6 5 9 9 C 1.35848 * 126.09967 * 179.97438 * 5 2 1 10 10 N 1.39205 * 126.27129 * 0.04413 * 9 5 2 11 11 C 1.34777 * 120.00062 * 179.97438 * 10 9 5 12 12 O 1.21388 * 119.99917 * 359.97438 * 11 10 9 13 13 C 1.49305 * 120.00015 * 180.02562 * 11 10 9 14 14 O 1.21366 * 120.00126 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00015 * 180.02562 * 13 11 10 16 16 C 1.46495 * 120.00267 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47405 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00324 * 180.02562 * 17 16 15 20 20 N 1.31509 * 119.99711 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47311 * 60.00325 * 21 19 17 23 23 H 1.48497 * 109.46932 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47135 * 300.00007 * 21 19 17 25 25 H 1.09001 * 109.46778 * 299.99658 * 1 2 3 26 26 H 1.08996 * 109.47437 * 59.99919 * 1 2 3 27 27 H 1.09006 * 109.46699 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46697 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46740 * 299.99947 * 3 2 1 30 30 H 1.09001 * 109.47176 * 60.00586 * 3 2 1 31 31 H 1.09000 * 109.46303 * 299.99892 * 4 2 1 32 32 H 1.08996 * 109.47083 * 59.99530 * 4 2 1 33 33 H 1.08997 * 109.47092 * 179.97438 * 4 2 1 34 34 H 1.08002 * 125.76843 * 179.97438 * 7 6 5 35 35 H 1.07996 * 126.06894 * 179.71164 * 8 7 6 36 36 H 0.97001 * 120.00166 * 359.97438 * 10 9 5 37 37 H 0.97001 * 119.99771 * 359.97438 * 15 13 11 38 38 H 1.08996 * 109.47618 * 300.00133 * 16 15 13 39 39 H 1.09000 * 109.47006 * 60.00083 * 16 15 13 40 40 H 0.97002 * 119.99978 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 7 1.2265 -1.2687 2.1964 7 6 2.0167 -1.7904 3.0996 8 6 3.3400 -1.5610 2.7151 9 6 3.3201 -0.8853 1.5326 10 7 4.4303 -0.4652 0.8054 11 6 5.6719 -0.7274 1.2595 12 8 5.8221 -1.3295 2.3028 13 6 6.8627 -0.2763 0.4799 14 8 6.7126 0.3261 -0.5630 15 7 8.1043 -0.5390 0.9337 16 6 9.2727 -0.0969 0.1685 17 6 10.5304 -0.5120 0.8873 18 1 10.4659 -1.0516 1.8207 19 6 11.7636 -0.2029 0.3535 20 7 11.8421 0.4545 -0.7827 21 14 13.3226 -0.7181 1.2443 22 1 13.3503 -2.1968 1.3787 23 1 14.5069 -0.2699 0.4686 24 1 13.3499 -0.0979 2.5932 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.6995 -2.3067 3.9936 35 1 4.2220 -1.8676 3.2576 36 1 4.3104 0.0162 -0.0281 37 1 8.2242 -1.0207 1.7670 38 1 9.2524 -0.5525 -0.8215 39 1 9.2527 0.9884 0.0694 40 1 12.7096 0.6717 -1.1585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427847876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:55 Heat of formation + Delta-G solvation = -9.100640 kcal Electronic energy + Delta-G solvation = -23557.734280 eV Core-core repulsion = 19987.905953 eV Total energy + Delta-G solvation = -3569.828327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87489 -41.50889 -39.67169 -37.86086 -36.79678 -35.89276 -34.38539 -31.32996 -30.48913 -29.61896 -28.50457 -28.38038 -26.53926 -24.45747 -23.40062 -22.51334 -21.27807 -21.08627 -19.60283 -18.32431 -18.22414 -17.55430 -17.35603 -16.89605 -16.48040 -16.39717 -16.06248 -15.50736 -15.37531 -15.01587 -14.66297 -14.65252 -14.16923 -14.07278 -13.94136 -13.35582 -13.27699 -13.11089 -13.02781 -12.85768 -12.84284 -12.70220 -12.34490 -12.25792 -12.23916 -12.10300 -11.58783 -11.54950 -10.84184 -10.81167 -10.10110 -10.01477 -9.28612 -8.31339 -6.47273 -0.07150 0.70754 0.93686 1.45171 1.48040 1.55473 1.60459 1.81006 2.08828 2.34300 2.51026 3.04444 3.30768 3.33559 3.66173 3.79302 3.97191 4.17254 4.30878 4.40814 4.56402 4.61919 4.63376 4.72243 4.79350 4.80109 4.95622 5.00230 5.04456 5.10942 5.16920 5.20851 5.26796 5.49269 5.67061 5.76914 5.78747 5.91368 6.34522 6.54177 6.63293 6.69691 6.93120 7.25428 8.79978 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.003125 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.154901 B = 8958.825757 C = 9677.615273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.164 3.836 3 C -0.164 4.164 4 C -0.164 4.164 5 N -0.374 5.374 6 N -0.297 5.297 7 C 0.059 3.941 8 C -0.295 4.295 9 C 0.292 3.708 10 N -0.614 5.614 11 C 0.525 3.475 12 O -0.494 6.494 13 C 0.501 3.499 14 O -0.554 6.554 15 N -0.667 5.667 16 C 0.263 3.737 17 C -0.563 4.563 18 H 0.081 0.919 19 C 0.012 3.988 20 N -0.925 5.925 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.264 1.264 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.218 0.782 35 H 0.162 0.838 36 H 0.427 0.573 37 H 0.415 0.585 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.921 -1.440 2.484 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.083 3.917 3 C -0.222 4.222 4 C -0.222 4.222 5 N -0.164 5.164 6 N -0.118 5.118 7 C -0.127 4.127 8 C -0.326 4.326 9 C 0.072 3.928 10 N -0.266 5.266 11 C 0.306 3.694 12 O -0.366 6.366 13 C 0.280 3.720 14 O -0.434 6.434 15 N -0.317 5.317 16 C 0.142 3.858 17 C -0.601 4.601 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.189 1.189 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.234 0.766 35 H 0.180 0.820 36 H 0.268 0.732 37 H 0.252 0.748 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.950 -1.080 1.863 23.051 hybrid contribution 1.945 -0.186 0.320 1.980 sum -21.005 -1.267 2.183 21.156 Atomic orbital electron populations 1.21816 0.89656 1.03409 1.03879 1.21177 0.98004 0.91777 0.80757 1.22379 1.00924 0.93816 1.05119 1.22377 1.00924 1.01740 0.97200 1.49428 1.00448 1.46319 1.20157 1.77344 1.17644 1.17259 0.99599 1.24226 0.90487 0.98518 0.99429 1.21787 1.00031 1.12469 0.98347 1.18174 0.80740 0.99960 0.93905 1.42597 1.02512 1.55518 1.25955 1.20087 0.83728 0.80095 0.85526 1.90697 1.85580 1.37906 1.22409 1.19833 0.84758 0.81630 0.85783 1.90729 1.86297 1.42083 1.24262 1.46136 1.04761 1.54328 1.26467 1.18871 0.81467 0.94297 0.91195 1.21543 0.90647 1.38791 1.09121 0.90120 1.25928 1.03010 0.94313 0.95598 1.70082 1.26694 1.39558 1.19935 0.85264 0.76876 0.79078 0.78408 1.18898 1.20849 1.18886 0.92049 0.88058 0.92044 0.93404 0.86845 0.91774 0.91773 0.86845 0.93402 0.76599 0.82024 0.73186 0.74829 0.97396 0.97404 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 7.99 71.98 0.57 -1.20 16 2 C 0.16 2.82 1.06 3.61 0.00 2.83 16 3 C -0.16 -2.53 8.48 71.98 0.61 -1.92 16 4 C -0.16 -2.53 8.48 71.98 0.61 -1.92 16 5 N -0.37 -8.86 3.48 -304.50 -1.06 -9.92 16 6 N -0.30 -7.26 11.64 -57.13 -0.66 -7.92 16 7 C 0.06 1.34 12.00 85.19 1.02 2.36 16 8 C -0.29 -8.13 9.65 22.15 0.21 -7.91 16 9 C 0.29 8.01 7.02 131.25 0.92 8.93 16 10 N -0.61 -17.19 4.72 -309.59 -1.46 -18.65 16 11 C 0.52 17.28 7.85 87.22 0.68 17.97 16 12 O -0.49 -17.03 13.60 -3.37 -0.05 -17.07 16 13 C 0.50 19.47 7.88 87.22 0.69 20.16 16 14 O -0.55 -23.77 16.48 -3.30 -0.05 -23.82 16 15 N -0.67 -28.05 5.54 -468.31 -2.59 -30.64 16 16 C 0.26 13.62 5.43 85.63 0.46 14.08 16 17 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16 18 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 19 C 0.01 0.65 5.46 84.66 0.46 1.11 16 20 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 21 Si 0.98 41.41 29.54 68.60 2.03 43.44 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.87 5.90 -2.38 -0.01 0.86 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.87 5.90 -2.39 -0.01 0.86 16 34 H 0.22 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.16 4.80 5.83 -2.91 -0.02 4.79 16 36 H 0.43 10.82 4.43 -92.71 -0.41 10.41 16 37 H 0.41 15.85 7.79 -92.71 -0.72 15.12 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 40 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -65.87 337.26 2.87 -62.99 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.05 Total: 29.62 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 6.49 Total: 24.96 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -5.50 Total: -120.12 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.10 Total: -40.90 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -65.87 2.87 -62.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427847876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.894 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds