Wall clock time and date at job start Tue Mar 31 2020 04:31:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46499 * 109.46953 * 2 1
4 4 C 1.35227 * 125.99246 * 125.00259 * 3 2 1
5 5 C 1.35848 * 107.64226 * 180.02562 * 4 3 2
6 6 N 1.40481 * 126.11537 * 179.97438 * 5 4 3
7 7 C 1.34778 * 119.99925 * 179.97438 * 6 5 4
8 8 O 1.21398 * 120.00198 * 359.97438 * 7 6 5
9 9 C 1.49335 * 119.99983 * 179.97438 * 7 6 5
10 10 O 1.21362 * 119.99518 * 5.92506 * 9 7 6
11 11 N 1.34773 * 120.00067 * 185.91891 * 9 7 6
12 12 C 1.46505 * 119.99883 * 356.42932 * 11 9 7
13 13 C 1.46493 * 119.99904 * 176.42700 * 11 9 7
14 14 H 1.09005 * 109.47434 * 359.97438 * 13 11 9
15 15 C 1.53006 * 109.47105 * 240.00255 * 13 11 9
16 16 C 1.50700 * 109.47336 * 120.00337 * 13 11 9
17 17 H 1.08001 * 120.00011 * 359.97438 * 16 13 11
18 18 C 1.37879 * 120.00053 * 179.97438 * 16 13 11
19 19 N 1.31520 * 119.99754 * 179.72067 * 18 16 13
20 20 Si 1.86796 * 120.00212 * 359.97438 * 18 16 13
21 21 H 1.48493 * 109.47215 * 269.72523 * 20 18 16
22 22 H 1.48501 * 109.47224 * 29.72571 * 20 18 16
23 23 H 1.48503 * 109.47236 * 149.72236 * 20 18 16
24 24 C 1.40342 * 107.76955 * 0.22326 * 5 4 3
25 25 N 1.30827 * 108.20929 * 359.61913 * 24 5 4
26 26 H 1.08999 * 109.46754 * 299.99380 * 1 2 3
27 27 H 1.08991 * 109.47227 * 60.00030 * 1 2 3
28 28 H 1.09010 * 109.46717 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47058 * 240.00197 * 2 1 3
30 30 H 1.08998 * 109.47440 * 120.00227 * 2 1 3
31 31 H 1.07994 * 126.18106 * 0.03969 * 4 3 2
32 32 H 0.97004 * 119.99980 * 359.97438 * 6 5 4
33 33 H 1.09001 * 109.46649 * 275.97780 * 12 11 9
34 34 H 1.08997 * 109.47403 * 35.98256 * 12 11 9
35 35 H 1.09002 * 109.46902 * 155.98255 * 12 11 9
36 36 H 1.08998 * 109.47087 * 180.02562 * 15 13 11
37 37 H 1.09001 * 109.47072 * 299.99490 * 15 13 11
38 38 H 1.08996 * 109.47134 * 59.99860 * 15 13 11
39 39 H 0.96995 * 119.99558 * 180.27337 * 19 18 16
40 40 H 1.08000 * 125.89495 * 179.73682 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.8749 1.9213 0.8962
5 6 3.0729 3.2189 0.5462
6 7 3.8950 4.1408 1.2154
7 6 4.0020 5.4041 0.7582
8 8 3.3884 5.7453 -0.2322
9 6 4.8754 6.3843 1.4699
10 8 5.5713 6.0176 2.3941
11 7 4.8909 7.6761 1.0858
12 6 4.1113 8.1034 -0.0787
13 6 5.6873 8.6528 1.8327
14 1 6.1933 8.1534 2.6589
15 6 4.7687 9.7454 2.3836
16 6 6.7111 9.2721 0.9165
17 1 6.7636 8.9682 -0.1185
18 6 7.5807 10.2267 1.3997
19 7 8.4778 10.7632 0.6015
20 14 7.4895 10.7529 3.1897
21 1 6.5575 11.9014 3.3211
22 1 6.9982 9.6198 4.0143
23 1 8.8404 11.1557 3.6567
24 6 2.3050 3.4753 -0.6001
25 7 1.6794 2.3740 -0.9279
26 1 -0.3633 0.5137 0.8901
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0278 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.8934 -0.5138 0.8899
31 1 3.3212 1.4129 1.7380
32 1 4.3856 3.8681 2.0066
33 1 4.6847 7.9192 -0.9872
34 1 3.1783 7.5413 -0.1175
35 1 3.8910 9.1679 0.0024
36 1 5.3613 10.4723 2.9390
37 1 4.2623 10.2450 1.5577
38 1 4.0282 9.2975 3.0463
39 1 9.0922 11.4319 0.9424
40 1 2.2427 4.4184 -1.1227
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000439327184.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:31:00
Heat of formation + Delta-G solvation = 39.085917 kcal
Electronic energy + Delta-G solvation = -23460.290876 eV
Core-core repulsion = 19892.552075 eV
Total energy + Delta-G solvation = -3567.738801 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.56564 -40.23335 -38.16787 -36.06548 -35.11112 -33.95908 -32.67536 -30.49532
-30.43096 -28.80060 -26.35251 -25.30383 -24.72120 -23.92856 -21.81396 -21.30458
-20.18243 -19.01304 -17.65821 -17.25799 -16.70352 -16.42727 -15.92518 -15.63840
-15.48092 -15.11893 -14.56058 -14.34642 -14.05863 -13.66421 -13.30158 -13.02064
-12.96054 -12.83228 -12.46683 -12.36444 -12.26028 -11.87416 -11.84945 -11.78163
-11.21912 -10.91282 -10.85472 -10.73595 -10.61817 -10.17887 -9.66824 -9.56613
-9.38805 -8.86065 -8.67231 -7.95398 -7.77139 -6.17257 -4.19012 1.43096
1.91368 2.15160 2.76367 2.79812 3.21105 3.34414 3.35541 3.67033
3.97628 4.23511 4.31623 4.53764 4.60031 4.71539 4.79556 4.98204
5.14955 5.17954 5.29806 5.43561 5.52788 5.74527 5.89110 5.98926
6.15696 6.23789 6.27680 6.39875 6.56837 6.70100 6.77345 6.81774
6.91986 7.13155 7.23244 7.53242 7.54889 7.86753 8.08469 8.35156
8.55301 8.85109 9.41821 10.95333
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.042227 B = 0.003061 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 662.927765 B = 9144.460145 C = 9333.782768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.136 3.864
3 N -0.371 5.371
4 C 0.019 3.981
5 C 0.001 3.999
6 N -0.620 5.620
7 C 0.511 3.489
8 O -0.506 6.506
9 C 0.499 3.501
10 O -0.538 6.538
11 N -0.546 5.546
12 C 0.072 3.928
13 C 0.226 3.774
14 H 0.066 0.934
15 C -0.163 4.163
16 C -0.529 4.529
17 H 0.081 0.919
18 C 0.077 3.923
19 N -0.892 5.892
20 Si 0.883 3.117
21 H -0.276 1.276
22 H -0.263 1.263
23 H -0.293 1.293
24 C 0.054 3.946
25 N -0.286 5.286
26 H 0.060 0.940
27 H 0.071 0.929
28 H 0.074 0.926
29 H 0.084 0.916
30 H 0.095 0.905
31 H 0.177 0.823
32 H 0.421 0.579
33 H 0.057 0.943
34 H 0.091 0.909
35 H 0.070 0.930
36 H 0.053 0.947
37 H 0.060 0.940
38 H 0.035 0.965
39 H 0.267 0.733
40 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.582 -18.929 1.651 23.951
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.015 3.985
3 N -0.156 5.156
4 C -0.128 4.128
5 C -0.103 4.103
6 N -0.266 5.266
7 C 0.295 3.705
8 O -0.381 6.381
9 C 0.280 3.720
10 O -0.417 6.417
11 N -0.276 5.276
12 C -0.070 4.070
13 C 0.125 3.875
14 H 0.083 0.917
15 C -0.220 4.220
16 C -0.568 4.568
17 H 0.099 0.901
18 C -0.127 4.127
19 N -0.529 5.529
20 Si 0.713 3.287
21 H -0.203 1.203
22 H -0.188 1.188
23 H -0.221 1.221
24 C -0.133 4.133
25 N -0.108 5.108
26 H 0.080 0.920
27 H 0.090 0.910
28 H 0.093 0.907
29 H 0.102 0.898
30 H 0.113 0.887
31 H 0.195 0.805
32 H 0.258 0.742
33 H 0.076 0.924
34 H 0.109 0.891
35 H 0.089 0.911
36 H 0.072 0.928
37 H 0.079 0.921
38 H 0.054 0.946
39 H 0.077 0.923
40 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -15.312 -19.348 0.592 24.681
hybrid contribution 1.010 0.692 1.844 2.213
sum -14.301 -18.656 2.436 23.633
Atomic orbital electron populations
1.22071 0.93805 1.02793 1.03747 1.21648 0.95998 0.77112 1.03740
1.48304 1.35856 1.10239 1.21181 1.21812 0.99122 0.93530 0.98377
1.17779 1.03246 0.90002 0.99307 1.42504 1.44871 1.08896 1.30346
1.20610 0.82441 0.82668 0.84818 1.90538 1.45431 1.76774 1.25386
1.19566 0.83852 0.83776 0.84855 1.90715 1.42847 1.77985 1.30170
1.47850 1.44360 1.06516 1.28877 1.22209 0.96248 1.01182 0.87404
1.19494 0.89172 0.85547 0.93284 0.91676 1.22478 0.99543 0.99777
1.00238 1.21110 1.15096 1.22321 0.98230 0.90089 1.24862 0.94702
0.95544 0.97554 1.69872 1.19462 1.27994 1.35585 0.86917 0.76527
0.79458 0.85804 1.20300 1.18774 1.22050 1.24584 0.94905 0.98335
0.95491 1.77360 1.23557 0.96466 1.13413 0.92039 0.90979 0.90735
0.89768 0.88681 0.80543 0.74209 0.92443 0.89065 0.91133 0.92838
0.92138 0.94598 0.92331 0.77563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.95 10.10 37.16 0.38 -0.58 16
2 C 0.14 0.82 7.23 -4.04 -0.03 0.79 16
3 N -0.37 -3.77 3.69 -61.15 -0.23 -4.00 16
4 C 0.02 0.19 11.49 -16.91 -0.19 0.00 16
5 C 0.00 0.02 6.90 -83.96 -0.58 -0.56 16
6 N -0.62 -8.37 5.45 -10.48 -0.06 -8.42 16
7 C 0.51 8.44 7.74 -11.64 -0.09 8.35 16
8 O -0.51 -8.54 10.29 5.45 0.06 -8.48 16
9 C 0.50 9.86 7.73 -11.64 -0.09 9.77 16
10 O -0.54 -11.65 15.82 5.49 0.09 -11.56 16
11 N -0.55 -11.46 2.75 -175.81 -0.48 -11.94 16
12 C 0.07 1.31 8.75 59.85 0.52 1.84 16
13 C 0.23 5.39 2.22 -69.08 -0.15 5.23 16
14 H 0.07 1.68 5.96 -51.93 -0.31 1.37 16
15 C -0.16 -3.43 8.66 37.16 0.32 -3.10 16
16 C -0.53 -14.58 8.95 -34.44 -0.31 -14.89 16
17 H 0.08 2.43 7.89 -52.49 -0.41 2.01 16
18 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16
19 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16
20 Si 0.88 21.39 24.37 -169.99 -4.14 17.24 16
21 H -0.28 -6.39 6.88 56.52 0.39 -6.01 16
22 H -0.26 -6.20 6.52 56.52 0.37 -5.83 16
23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
24 C 0.05 0.75 10.84 -17.19 -0.19 0.56 16
25 N -0.29 -3.78 12.40 30.72 0.38 -3.40 16
26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16
29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.09 0.31 8.07 -51.93 -0.42 -0.11 16
31 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16
32 H 0.42 4.94 8.31 -40.82 -0.34 4.60 16
33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
34 H 0.09 1.51 5.36 -51.94 -0.28 1.23 16
35 H 0.07 1.25 6.44 -51.93 -0.33 0.91 16
36 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16
37 H 0.06 1.20 6.67 -51.93 -0.35 0.85 16
38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16
39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
40 H 0.21 2.99 5.92 -52.49 -0.31 2.68 16
LS Contribution 328.40 15.07 4.95 4.95
Total: -1.00 -33.23 328.40 -4.23 -37.46
By element:
Atomic # 1 Polarization: 9.67 SS G_CDS: -5.06 Total: 4.61 kcal
Atomic # 6 Polarization: 9.97 SS G_CDS: -0.51 Total: 9.47 kcal
Atomic # 7 Polarization: -54.08 SS G_CDS: 0.39 Total: -53.69 kcal
Atomic # 8 Polarization: -20.19 SS G_CDS: 0.14 Total: -20.04 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.24 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -33.23 -4.23 -37.46 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000439327184.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.545 kcal
(2) G-P(sol) polarization free energy of solvation -33.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds