Wall clock time and date at job start Tue Mar 31 2020 04:30:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46499 * 109.46953 * 2 1
4 4 C 1.35227 * 125.99246 * 125.00259 * 3 2 1
5 5 C 1.35848 * 107.64226 * 180.02562 * 4 3 2
6 6 N 1.40481 * 126.11537 * 179.97438 * 5 4 3
7 7 C 1.34778 * 119.99925 * 179.97438 * 6 5 4
8 8 O 1.21398 * 120.00198 * 359.97438 * 7 6 5
9 9 C 1.49335 * 119.99983 * 179.97438 * 7 6 5
10 10 O 1.21362 * 119.99518 * 5.92506 * 9 7 6
11 11 N 1.34773 * 120.00067 * 185.91891 * 9 7 6
12 12 C 1.46505 * 119.99883 * 356.42932 * 11 9 7
13 13 C 1.46493 * 119.99904 * 176.42700 * 11 9 7
14 14 H 1.09005 * 109.47434 * 359.97438 * 13 11 9
15 15 C 1.53006 * 109.47105 * 240.00255 * 13 11 9
16 16 C 1.50700 * 109.47336 * 120.00337 * 13 11 9
17 17 H 1.08001 * 120.00011 * 359.97438 * 16 13 11
18 18 C 1.37879 * 120.00053 * 179.97438 * 16 13 11
19 19 N 1.31520 * 119.99754 * 179.72067 * 18 16 13
20 20 Si 1.86796 * 120.00212 * 359.97438 * 18 16 13
21 21 H 1.48493 * 109.47215 * 269.72523 * 20 18 16
22 22 H 1.48501 * 109.47224 * 29.72571 * 20 18 16
23 23 H 1.48503 * 109.47236 * 149.72236 * 20 18 16
24 24 C 1.40342 * 107.76955 * 0.22326 * 5 4 3
25 25 N 1.30827 * 108.20929 * 359.61913 * 24 5 4
26 26 H 1.08999 * 109.46754 * 299.99380 * 1 2 3
27 27 H 1.08991 * 109.47227 * 60.00030 * 1 2 3
28 28 H 1.09010 * 109.46717 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47058 * 240.00197 * 2 1 3
30 30 H 1.08998 * 109.47440 * 120.00227 * 2 1 3
31 31 H 1.07994 * 126.18106 * 0.03969 * 4 3 2
32 32 H 0.97004 * 119.99980 * 359.97438 * 6 5 4
33 33 H 1.09001 * 109.46649 * 275.97780 * 12 11 9
34 34 H 1.08997 * 109.47403 * 35.98256 * 12 11 9
35 35 H 1.09002 * 109.46902 * 155.98255 * 12 11 9
36 36 H 1.08998 * 109.47087 * 180.02562 * 15 13 11
37 37 H 1.09001 * 109.47072 * 299.99490 * 15 13 11
38 38 H 1.08996 * 109.47134 * 59.99860 * 15 13 11
39 39 H 0.96995 * 119.99558 * 180.27337 * 19 18 16
40 40 H 1.08000 * 125.89495 * 179.73682 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.8749 1.9213 0.8962
5 6 3.0729 3.2189 0.5462
6 7 3.8950 4.1408 1.2154
7 6 4.0020 5.4041 0.7582
8 8 3.3884 5.7453 -0.2322
9 6 4.8754 6.3843 1.4699
10 8 5.5713 6.0176 2.3941
11 7 4.8909 7.6761 1.0858
12 6 4.1113 8.1034 -0.0787
13 6 5.6873 8.6528 1.8327
14 1 6.1933 8.1534 2.6589
15 6 4.7687 9.7454 2.3836
16 6 6.7111 9.2721 0.9165
17 1 6.7636 8.9682 -0.1185
18 6 7.5807 10.2267 1.3997
19 7 8.4778 10.7632 0.6015
20 14 7.4895 10.7529 3.1897
21 1 6.5575 11.9014 3.3211
22 1 6.9982 9.6198 4.0143
23 1 8.8404 11.1557 3.6567
24 6 2.3050 3.4753 -0.6001
25 7 1.6794 2.3740 -0.9279
26 1 -0.3633 0.5137 0.8901
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0278 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.8934 -0.5138 0.8899
31 1 3.3212 1.4129 1.7380
32 1 4.3856 3.8681 2.0066
33 1 4.6847 7.9192 -0.9872
34 1 3.1783 7.5413 -0.1175
35 1 3.8910 9.1679 0.0024
36 1 5.3613 10.4723 2.9390
37 1 4.2623 10.2450 1.5577
38 1 4.0282 9.2975 3.0463
39 1 9.0922 11.4319 0.9424
40 1 2.2427 4.4184 -1.1227
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000439327184.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:30:59
Heat of formation + Delta-G solvation = 14.015508 kcal
Electronic energy + Delta-G solvation = -23461.378010 eV
Core-core repulsion = 19892.552075 eV
Total energy + Delta-G solvation = -3568.825935 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.54713 -41.56974 -39.60164 -37.66189 -36.20622 -34.87325 -34.58887 -32.30375
-31.27435 -29.71942 -27.87843 -27.20092 -26.14286 -24.69821 -23.17050 -22.19031
-21.44175 -20.41452 -19.00425 -18.65404 -18.30780 -17.85442 -17.24732 -16.95527
-16.58682 -16.36203 -16.01288 -15.32013 -15.21025 -14.97018 -14.78915 -14.63334
-14.11306 -13.99204 -13.89585 -13.63606 -13.50395 -13.22737 -13.05555 -12.92141
-12.62158 -12.42061 -12.22040 -12.04446 -11.87504 -11.67035 -11.52132 -11.38302
-10.80421 -10.42049 -10.31902 -9.59047 -8.79708 -8.34587 -6.41398 0.21747
0.90222 1.19185 1.29919 1.38465 1.47432 1.66438 1.70389 2.28870
2.29728 2.61334 2.99962 3.33231 3.63805 3.92399 4.12401 4.17883
4.35393 4.40328 4.43026 4.50771 4.53807 4.55500 4.64561 4.71994
4.84135 4.91123 4.96996 4.99364 5.16184 5.26107 5.28460 5.40841
5.56658 5.70146 5.97645 6.05355 6.19923 6.44421 6.59412 6.62850
6.78812 6.97556 7.24569 8.81668
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.042227 B = 0.003061 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 662.927765 B = 9144.460145 C = 9333.782768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.124 3.876
3 N -0.363 5.363
4 C 0.052 3.948
5 C -0.035 4.035
6 N -0.599 5.599
7 C 0.515 3.485
8 O -0.516 6.516
9 C 0.495 3.505
10 O -0.560 6.560
11 N -0.559 5.559
12 C 0.079 3.921
13 C 0.229 3.771
14 H 0.047 0.953
15 C -0.157 4.157
16 C -0.532 4.532
17 H 0.040 0.960
18 C 0.022 3.978
19 N -0.940 5.940
20 Si 0.945 3.055
21 H -0.253 1.253
22 H -0.252 1.252
23 H -0.295 1.295
24 C 0.036 3.964
25 N -0.313 5.313
26 H 0.053 0.947
27 H 0.047 0.953
28 H 0.101 0.899
29 H 0.093 0.907
30 H 0.134 0.866
31 H 0.224 0.776
32 H 0.430 0.570
33 H 0.042 0.958
34 H 0.112 0.888
35 H 0.074 0.926
36 H 0.048 0.952
37 H 0.069 0.931
38 H 0.063 0.937
39 H 0.269 0.731
40 H 0.192 0.808
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.118 -21.150 3.761 26.856
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.005 3.995
3 N -0.148 5.148
4 C -0.098 4.098
5 C -0.139 4.139
6 N -0.246 5.246
7 C 0.297 3.703
8 O -0.392 6.392
9 C 0.278 3.722
10 O -0.440 6.440
11 N -0.288 5.288
12 C -0.063 4.063
13 C 0.126 3.874
14 H 0.065 0.935
15 C -0.214 4.214
16 C -0.571 4.571
17 H 0.058 0.942
18 C -0.177 4.177
19 N -0.579 5.579
20 Si 0.771 3.229
21 H -0.179 1.179
22 H -0.176 1.176
23 H -0.223 1.223
24 C -0.150 4.150
25 N -0.136 5.136
26 H 0.072 0.928
27 H 0.066 0.934
28 H 0.120 0.880
29 H 0.111 0.889
30 H 0.152 0.848
31 H 0.240 0.760
32 H 0.269 0.731
33 H 0.061 0.939
34 H 0.129 0.871
35 H 0.093 0.907
36 H 0.067 0.933
37 H 0.088 0.912
38 H 0.082 0.918
39 H 0.079 0.921
40 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges -16.899 -21.625 2.686 27.576
hybrid contribution 1.457 1.133 1.098 2.148
sum -15.441 -20.492 3.784 25.936
Atomic orbital electron populations
1.22041 0.93728 1.04074 1.02172 1.22140 0.96132 0.75082 1.06139
1.48802 1.34872 1.11051 1.20039 1.22496 0.96848 0.92254 0.98153
1.17941 1.04758 0.91162 1.00080 1.42235 1.44339 1.07817 1.30175
1.19879 0.82428 0.83250 0.84765 1.90540 1.45865 1.77119 1.25686
1.20125 0.83709 0.83818 0.84569 1.90685 1.43781 1.78375 1.31159
1.47873 1.44561 1.06875 1.29533 1.22256 0.96387 1.01746 0.85920
1.19226 0.89457 0.86595 0.92117 0.93504 1.22351 0.99434 0.98659
1.00973 1.21299 1.16390 1.22249 0.97116 0.94174 1.25717 0.94169
0.95612 1.02211 1.70016 1.20748 1.29158 1.37953 0.85914 0.76843
0.79994 0.80116 1.17866 1.17640 1.22296 1.24434 0.95920 0.98327
0.96327 1.77318 1.24345 0.97067 1.14868 0.92754 0.93367 0.88040
0.88871 0.84775 0.75958 0.73114 0.93904 0.87063 0.90710 0.93315
0.91181 0.91818 0.92138 0.79156
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.45 10.10 71.98 0.73 -0.72 16
2 C 0.12 1.04 7.23 86.38 0.62 1.66 16
3 N -0.36 -6.38 3.69 -347.39 -1.28 -7.66 16
4 C 0.05 0.84 11.49 83.62 0.96 1.80 16
5 C -0.04 -0.84 6.90 37.71 0.26 -0.58 16
6 N -0.60 -15.35 5.45 -305.41 -1.67 -17.02 16
7 C 0.51 16.81 7.74 87.23 0.68 17.48 16
8 O -0.52 -17.48 10.29 -3.40 -0.03 -17.52 16
9 C 0.50 19.55 7.73 87.23 0.67 20.23 16
10 O -0.56 -24.10 15.82 -3.28 -0.05 -24.15 16
11 N -0.56 -23.54 2.75 -828.50 -2.28 -25.83 16
12 C 0.08 2.89 8.75 127.77 1.12 4.01 16
13 C 0.23 10.86 2.22 44.25 0.10 10.96 16
14 H 0.05 2.40 5.96 -2.38 -0.01 2.39 16
15 C -0.16 -6.30 8.66 71.98 0.62 -5.68 16
16 C -0.53 -30.13 8.95 25.60 0.23 -29.90 16
17 H 0.04 2.53 7.89 -2.91 -0.02 2.51 16
18 C 0.02 1.25 5.45 84.65 0.46 1.71 16
19 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16
20 Si 0.95 43.85 24.37 68.60 1.67 45.52 16
21 H -0.25 -10.78 6.88 99.48 0.68 -10.10 16
22 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16
23 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16
24 C 0.04 0.99 10.84 85.35 0.93 1.91 16
25 N -0.31 -8.01 12.40 -56.71 -0.70 -8.71 16
26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
28 H 0.10 0.36 8.14 -2.38 -0.02 0.35 16
29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.13 0.14 8.07 -2.39 -0.02 0.12 16
31 H 0.22 1.38 8.06 -2.91 -0.02 1.35 16
32 H 0.43 9.25 8.31 -92.71 -0.77 8.48 16
33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
34 H 0.11 3.65 5.36 -2.48 -0.01 3.64 16
35 H 0.07 2.64 6.44 -2.39 -0.02 2.62 16
36 H 0.05 2.00 3.27 -2.39 -0.01 1.99 16
37 H 0.07 2.66 6.67 -2.39 -0.02 2.64 16
38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
39 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16
40 H 0.19 5.74 5.92 -2.91 -0.02 5.72 16
Total: -1.00 -75.01 328.40 3.56 -71.44
By element:
Atomic # 1 Polarization: 18.35 SS G_CDS: 0.23 Total: 18.58 kcal
Atomic # 6 Polarization: 15.50 SS G_CDS: 7.38 Total: 22.88 kcal
Atomic # 7 Polarization: -111.12 SS G_CDS: -5.63 Total: -116.75 kcal
Atomic # 8 Polarization: -41.58 SS G_CDS: -0.09 Total: -41.67 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 1.67 Total: 45.52 kcal
Total: -75.01 3.56 -71.44 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000439327184.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.460 kcal
(2) G-P(sol) polarization free energy of solvation -75.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds