Wall clock time and date at job start Tue Mar 31 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46780 * 2 1 4 4 H 1.09003 * 109.47544 * 304.89905 * 3 2 1 5 5 C 1.50703 * 109.47065 * 184.90277 * 3 2 1 6 6 H 1.08000 * 120.00264 * 245.45926 * 5 3 2 7 7 C 1.37880 * 120.00136 * 65.45104 * 5 3 2 8 8 N 1.31515 * 119.99551 * 9.47152 * 7 5 3 9 9 Si 1.86795 * 120.00260 * 189.47052 * 7 5 3 10 10 H 1.48501 * 109.47004 * 84.99319 * 9 7 5 11 11 H 1.48496 * 109.47293 * 204.99676 * 9 7 5 12 12 H 1.48494 * 109.47212 * 324.99673 * 9 7 5 13 13 N 1.46494 * 109.47244 * 64.90498 * 3 2 1 14 14 C 1.34779 * 119.99910 * 274.99646 * 13 3 2 15 15 O 1.21356 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.49333 * 119.99855 * 180.02562 * 14 13 3 17 17 O 1.21397 * 120.00365 * 359.97438 * 16 14 13 18 18 N 1.34779 * 119.99855 * 180.02562 * 16 14 13 19 19 C 1.40479 * 119.99871 * 179.97438 * 18 16 14 20 20 C 1.40334 * 126.11753 * 359.68771 * 19 18 16 21 21 N 1.30822 * 108.20798 * 179.87889 * 20 19 18 22 22 N 1.40053 * 108.37165 * 0.38064 * 21 20 19 23 23 C 1.46491 * 125.99765 * 179.73088 * 22 21 20 24 24 C 1.52998 * 109.47369 * 305.02873 * 23 22 21 25 25 C 1.35236 * 108.00543 * 359.75676 * 22 21 20 26 26 H 1.09005 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47052 * 299.99911 * 1 2 3 28 28 H 1.08995 * 109.47548 * 59.99770 * 1 2 3 29 29 H 1.09006 * 109.46763 * 240.00350 * 2 1 3 30 30 H 1.08995 * 109.47548 * 120.00230 * 2 1 3 31 31 H 0.97005 * 119.99927 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00505 * 95.27265 * 13 3 2 33 33 H 0.97000 * 119.99653 * 0.02562 * 18 16 14 34 34 H 1.08005 * 125.89268 * 0.02562 * 20 19 18 35 35 H 1.08996 * 109.47024 * 65.03233 * 23 22 21 36 36 H 1.09005 * 109.47263 * 185.02828 * 23 22 21 37 37 H 1.09000 * 109.47185 * 60.00171 * 24 23 22 38 38 H 1.09007 * 109.46915 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.46869 * 299.99976 * 24 23 22 40 40 H 1.07995 * 126.17327 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1412 0.9802 -1.2733 8 7 3.4096 0.7116 -2.3326 9 14 5.9918 0.7329 -1.3291 10 1 6.3290 -0.6065 -0.7837 11 1 6.4617 0.8277 -2.7346 12 1 6.6561 1.7810 -0.5134 13 7 1.6504 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3408 2.6321 0.4293 16 6 0.0360 3.3340 2.6385 17 8 0.8098 3.3666 3.5733 18 7 -1.1817 3.9005 2.7516 19 6 -1.5552 4.5292 3.9510 20 6 -0.7688 4.6368 5.1083 21 7 -1.4559 5.2894 6.0102 22 7 -2.7048 5.6128 5.4650 23 6 -3.7796 6.3389 6.1459 24 6 -4.1210 5.6315 7.4588 25 6 -2.7446 5.1367 4.1999 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8311 0.3854 -3.1431 32 1 2.2702 2.1278 1.9964 33 1 -1.8003 3.8734 2.0050 34 1 0.2319 4.2498 5.2321 35 1 -3.4535 7.3575 6.3561 36 1 -4.6623 6.3647 5.5068 37 1 -3.2383 5.6058 8.0979 38 1 -4.9204 6.1721 7.9656 39 1 -4.4471 4.6129 7.2485 40 1 -3.5723 5.2240 3.5116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439541889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:13 Heat of formation + Delta-G solvation = 6.822709 kcal Electronic energy + Delta-G solvation = -23204.301985 eV Core-core repulsion = 19635.164146 eV Total energy + Delta-G solvation = -3569.137839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52027 -40.03655 -38.14779 -35.55097 -35.01979 -33.92583 -32.36851 -31.07986 -30.44434 -28.78854 -27.23155 -24.74085 -23.92685 -22.91466 -21.44066 -21.10603 -19.89721 -19.42146 -18.24864 -17.52257 -16.35833 -16.20452 -15.86659 -15.39528 -15.37547 -15.08328 -14.37407 -14.26975 -14.08615 -13.78359 -13.34775 -12.96705 -12.82421 -12.74804 -12.44731 -12.13219 -11.81998 -11.55272 -11.42711 -11.16177 -10.97362 -10.86733 -10.80829 -10.79583 -10.40196 -10.26187 -9.75930 -9.54149 -9.18632 -9.00173 -8.53444 -8.05169 -7.80999 -6.19128 -4.24608 1.47942 1.96593 2.18755 2.84213 2.86447 3.25421 3.32143 3.34715 3.80152 4.15675 4.26202 4.36400 4.57385 4.63085 4.81201 4.97466 5.14434 5.15823 5.20241 5.31963 5.46743 5.55265 5.76846 6.07995 6.27038 6.30243 6.49469 6.72154 6.82862 6.91033 7.01358 7.14552 7.22070 7.24445 7.46331 7.58519 7.64228 7.72905 7.97932 8.01530 8.47188 8.65397 8.88327 9.40827 10.89066 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.034789 B = 0.002935 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.657574 B = 9539.276316 C = 9997.628481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.266 3.734 4 H 0.061 0.939 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.497 3.503 15 O -0.531 6.531 16 C 0.508 3.492 17 O -0.516 6.516 18 N -0.620 5.620 19 C 0.002 3.998 20 C 0.053 3.947 21 N -0.286 5.286 22 N -0.371 5.371 23 C 0.136 3.864 24 C -0.166 4.166 25 C 0.019 3.981 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.421 0.579 34 H 0.208 0.792 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.710 8.308 13.255 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.165 3.835 4 H 0.079 0.921 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.316 5.316 14 C 0.276 3.724 15 O -0.410 6.410 16 C 0.290 3.710 17 O -0.390 6.390 18 N -0.267 5.267 19 C -0.103 4.103 20 C -0.134 4.134 21 N -0.108 5.108 22 N -0.156 5.156 23 C 0.015 3.985 24 C -0.224 4.224 25 C -0.129 4.129 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.258 0.742 34 H 0.224 0.776 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.753 8.734 14.236 22.284 hybrid contribution 0.857 -0.493 -1.036 1.432 sum -13.895 8.241 13.200 20.862 Atomic orbital electron populations 1.21860 0.97999 0.98524 1.01332 1.21878 0.93009 0.99489 1.01666 1.19014 0.94904 0.89114 0.80464 0.92072 1.21160 0.90203 1.44345 1.02068 0.91737 1.24873 0.98674 0.94958 0.94860 1.69977 1.35879 1.43617 1.02158 0.86483 0.84703 0.78843 0.77262 1.20333 1.21163 1.19792 1.46428 1.13402 1.52523 1.19253 1.19551 0.84497 0.81382 0.86985 1.90738 1.51343 1.59531 1.39368 1.20845 0.81407 0.79185 0.89533 1.90602 1.50977 1.57440 1.39991 1.42497 1.16649 1.53679 1.13861 1.17796 0.95513 1.07439 0.89570 1.24578 1.01337 0.98158 0.89292 1.77352 0.91357 1.19561 1.22565 1.48302 1.12733 1.44820 1.09765 1.21640 0.86783 0.95288 0.94768 1.22072 1.02784 1.01104 0.96469 1.21815 0.99213 1.02681 0.89192 0.95433 0.94303 0.92765 0.89804 0.94310 0.92455 0.76363 0.74153 0.77614 0.89801 0.88679 0.90994 0.90743 0.92021 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.60 16 2 C -0.12 -2.81 5.50 -26.73 -0.15 -2.95 16 3 C 0.27 6.48 2.11 -69.09 -0.15 6.33 16 4 H 0.06 1.70 7.52 -51.93 -0.39 1.31 16 5 C -0.54 -14.03 8.66 -34.44 -0.30 -14.33 16 6 H 0.06 1.63 7.73 -52.49 -0.41 1.22 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.25 12.16 55.43 0.67 -23.58 16 9 Si 0.90 20.43 29.55 -169.99 -5.02 15.41 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 13 N -0.67 -13.91 5.02 -55.41 -0.28 -14.19 16 14 C 0.50 9.62 6.45 -11.64 -0.08 9.55 16 15 O -0.53 -11.08 13.61 5.49 0.07 -11.00 16 16 C 0.51 8.52 7.86 -11.64 -0.09 8.43 16 17 O -0.52 -9.19 13.63 5.46 0.07 -9.12 16 18 N -0.62 -8.54 5.46 -10.48 -0.06 -8.59 16 19 C 0.00 0.02 6.90 -83.96 -0.58 -0.56 16 20 C 0.05 0.77 10.84 -17.19 -0.19 0.59 16 21 N -0.29 -3.90 12.40 30.72 0.38 -3.52 16 22 N -0.37 -3.89 3.69 -61.16 -0.23 -4.11 16 23 C 0.14 0.85 7.23 -4.05 -0.03 0.82 16 24 C -0.17 -1.00 10.10 37.16 0.38 -0.62 16 25 C 0.02 0.19 11.49 -16.91 -0.19 0.00 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.78 5.65 -51.93 -0.29 0.49 16 28 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 29 H 0.08 2.12 6.80 -51.93 -0.35 1.77 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.40 7.87 7.99 -40.82 -0.33 7.54 16 33 H 0.42 5.02 8.29 -40.82 -0.34 4.68 16 34 H 0.21 3.15 5.92 -52.48 -0.31 2.84 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.33 8.07 -51.93 -0.42 -0.09 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -30.68 338.66 -5.76 -36.44 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.34 Total: 10.73 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.15 Total: 6.42 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.49 Total: -53.99 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.15 Total: -20.12 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.68 -5.76 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439541889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.265 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds