Wall clock time and date at job start Tue Mar 31 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47511 * 2 1 4 4 C 1.46497 * 120.00376 * 274.94575 * 3 2 1 5 5 C 1.50699 * 109.47025 * 263.11050 * 4 3 2 6 6 H 1.08001 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47169 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47115 * 120.00457 * 9 7 5 12 12 H 1.48504 * 109.46957 * 240.00011 * 9 7 5 13 13 C 1.34783 * 119.99885 * 94.93824 * 3 2 1 14 14 O 1.21367 * 120.00011 * 3.69708 * 13 3 2 15 15 C 1.49312 * 119.99964 * 183.69046 * 13 3 2 16 16 O 1.21394 * 119.99674 * 354.27058 * 15 13 3 17 17 N 1.34768 * 119.99746 * 174.26873 * 15 13 3 18 18 C 1.39197 * 119.99969 * 179.97438 * 17 15 13 19 19 C 1.36222 * 126.27028 * 359.97438 * 18 17 15 20 20 C 1.39694 * 107.85603 * 179.97438 * 19 18 17 21 21 N 1.30843 * 108.46222 * 0.25755 * 20 19 18 22 22 N 1.35853 * 126.27583 * 179.97438 * 18 17 15 23 23 C 1.46504 * 126.09529 * 0.02562 * 22 18 17 24 24 C 1.53006 * 109.46908 * 89.99995 * 23 22 18 25 25 H 1.09004 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47446 * 299.99968 * 1 2 3 27 27 H 1.08999 * 109.46842 * 60.00039 * 1 2 3 28 28 H 1.09002 * 109.47446 * 240.00032 * 2 1 3 29 29 H 1.09003 * 109.47309 * 120.00076 * 2 1 3 30 30 H 1.09004 * 109.46899 * 23.10714 * 4 3 2 31 31 H 1.08996 * 109.47614 * 143.10804 * 4 3 2 32 32 H 0.97001 * 120.00090 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00078 * 359.97438 * 17 15 13 34 34 H 1.07996 * 126.06911 * 359.95620 * 19 18 17 35 35 H 1.07998 * 125.76394 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47017 * 209.99696 * 23 22 18 37 37 H 1.08997 * 109.47203 * 329.99723 * 23 22 18 38 38 H 1.08998 * 109.46951 * 300.00195 * 24 23 22 39 39 H 1.09005 * 109.47107 * 59.99748 * 24 23 22 40 40 H 1.08997 * 109.46760 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1083 -1.2639 5 6 3.5889 2.0258 -1.7340 6 1 4.3193 1.4861 -1.1495 7 6 3.9643 2.6393 -2.9103 8 7 3.0750 3.2969 -3.6219 9 14 5.7360 2.5364 -3.4933 10 1 6.5321 1.7457 -2.5205 11 1 5.7820 1.8772 -4.8232 12 1 6.3025 3.9050 -3.5994 13 6 2.3378 1.9830 1.1629 14 8 2.2849 1.3600 2.2032 15 6 2.7567 3.4161 1.1715 16 8 2.9103 4.0098 0.1238 17 7 2.9643 4.0505 2.3422 18 6 3.3554 5.3863 2.3502 19 6 3.5651 6.1712 1.2568 20 6 3.9437 7.4388 1.7056 21 7 3.9689 7.4247 3.0137 22 7 3.5979 6.1463 3.4499 23 6 3.4950 5.7058 4.8433 24 6 4.8436 5.1478 5.3027 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5043 1.6644 -2.0135 31 1 1.8857 3.1527 -1.1148 32 1 3.3392 3.7289 -4.4492 33 1 2.8412 3.5761 3.1794 34 1 3.4580 5.8673 0.2260 35 1 4.1796 8.2859 1.0787 36 1 3.2186 6.5519 5.4724 37 1 2.7342 4.9294 4.9237 38 1 5.1201 4.3017 4.6735 39 1 5.6045 5.9242 5.2222 40 1 4.7672 4.8205 6.3395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446876530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:53 Heat of formation + Delta-G solvation = 31.537298 kcal Electronic energy + Delta-G solvation = -24310.607735 eV Core-core repulsion = 20742.541602 eV Total energy + Delta-G solvation = -3568.066134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32739 -40.00871 -38.00956 -35.87668 -34.70809 -34.03936 -32.69356 -30.57262 -29.51387 -28.84375 -27.12378 -25.04343 -23.82301 -23.11537 -22.39409 -21.15013 -19.96599 -19.06481 -17.85356 -16.76837 -16.60917 -16.17753 -15.56030 -15.31470 -15.05089 -14.77118 -14.42608 -14.11267 -13.94186 -13.54279 -13.43328 -13.04834 -12.77173 -12.56476 -12.41431 -12.17078 -12.09204 -11.72983 -11.65425 -11.43598 -10.98712 -10.89696 -10.75258 -10.65463 -10.53968 -10.35912 -10.00375 -9.69560 -8.83414 -8.81515 -8.32550 -7.96647 -7.79528 -6.05842 -4.09053 1.65334 2.14447 2.34318 2.97967 3.16654 3.29557 3.37901 3.41069 3.80109 3.95561 4.43092 4.44872 4.82769 4.83619 5.01112 5.11749 5.30793 5.35450 5.45937 5.50891 5.62475 5.72557 5.74219 5.82128 5.89945 6.10305 6.15572 6.22456 6.39920 6.48975 6.62237 6.96872 7.10232 7.28375 7.37715 7.45636 7.82564 7.93043 8.02955 8.14377 8.23552 8.54080 8.92483 9.54671 11.02857 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.005835 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.123916 B = 4797.209633 C = 6240.865203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.554 5.554 4 C 0.219 3.781 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.513 3.487 14 O -0.562 6.562 15 C 0.496 3.504 16 O -0.417 6.417 17 N -0.637 5.637 18 C 0.313 3.687 19 C -0.279 4.279 20 C 0.061 3.939 21 N -0.300 5.300 22 N -0.393 5.393 23 C 0.129 3.871 24 C -0.172 4.172 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.262 0.738 33 H 0.414 0.586 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 1.326 13.045 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.284 5.284 4 C 0.101 3.899 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.295 3.705 14 O -0.444 6.444 15 C 0.277 3.723 16 O -0.282 6.282 17 N -0.288 5.288 18 C 0.094 3.906 19 C -0.310 4.310 20 C -0.125 4.125 21 N -0.122 5.122 22 N -0.183 5.183 23 C 0.007 3.993 24 C -0.230 4.230 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.195 0.805 35 H 0.201 0.799 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.989 2.080 13.690 13.989 hybrid contribution 0.867 -0.738 -0.715 1.344 sum -1.122 1.342 12.975 13.093 Atomic orbital electron populations 1.22114 0.96104 1.01719 1.02278 1.21472 0.93907 0.82743 1.03342 1.48306 1.58400 1.13510 1.08141 1.20142 0.97875 0.94013 0.77877 1.21244 0.94111 1.33826 1.06806 0.92722 1.24797 0.97285 0.94740 0.96361 1.69920 1.33585 1.34105 1.14997 0.86530 0.85039 0.77934 0.78426 1.19969 1.21027 1.20789 1.19447 0.79729 0.86663 0.84654 1.90656 1.55771 1.65870 1.32102 1.20398 0.80113 0.88750 0.83024 1.90891 1.42169 1.65919 1.29237 1.42609 1.67448 1.07872 1.10898 1.18123 0.99865 0.83775 0.88869 1.21850 1.16065 0.93024 1.00081 1.23733 0.98571 0.98348 0.91870 1.77348 1.24722 0.96809 1.13370 1.48824 1.56855 1.08110 1.04475 1.21581 0.98700 1.00532 0.78455 1.22222 0.96975 1.02001 1.01847 0.91879 0.92844 0.92081 0.89772 0.90284 0.94796 0.90755 0.92802 0.74967 0.80458 0.79880 0.88501 0.89612 0.91972 0.91469 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 37.15 0.38 -1.96 16 2 C 0.11 1.83 6.18 -4.05 -0.02 1.81 16 3 N -0.55 -11.35 2.48 -175.63 -0.44 -11.79 16 4 C 0.22 5.28 4.79 -5.20 -0.02 5.25 16 5 C -0.52 -13.89 8.31 -34.44 -0.29 -14.18 16 6 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 8 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.30 7.66 -11.65 -0.09 10.21 16 14 O -0.56 -11.13 15.98 5.48 0.09 -11.04 16 15 C 0.50 9.80 7.72 -11.65 -0.09 9.71 16 16 O -0.42 -9.50 9.49 5.46 0.05 -9.45 16 17 N -0.64 -10.40 5.40 -11.80 -0.06 -10.47 16 18 C 0.31 5.23 7.68 -152.86 -1.17 4.06 16 19 C -0.28 -5.01 9.65 -39.76 -0.38 -5.39 16 20 C 0.06 0.94 12.00 -17.43 -0.21 0.73 16 21 N -0.30 -4.73 12.56 30.59 0.38 -4.34 16 22 N -0.39 -5.72 3.64 -60.28 -0.22 -5.94 16 23 C 0.13 1.31 6.99 -4.04 -0.03 1.28 16 24 C -0.17 -1.59 10.24 37.16 0.38 -1.21 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 29 H 0.08 1.30 7.24 -51.93 -0.38 0.93 16 30 H 0.03 0.84 8.02 -51.93 -0.42 0.43 16 31 H 0.08 1.93 5.41 -51.93 -0.28 1.65 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.41 5.69 7.47 -40.82 -0.30 5.39 16 34 H 0.18 3.61 5.83 -52.49 -0.31 3.31 16 35 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.72 7.52 -51.93 -0.39 0.33 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -31.44 341.38 -6.40 -37.84 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.42 Total: 5.93 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -1.65 Total: 12.15 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.40 Total: -56.95 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.14 Total: -20.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.44 -6.40 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446876530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.382 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds