Wall clock time and date at job start Tue Mar 31 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 C 1.46500 * 119.99867 * 264.99229 * 3 2 1 5 5 C 1.50700 * 109.47299 * 263.15225 * 4 3 2 6 6 H 1.07996 * 120.00177 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00012 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99940 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47314 * 90.00271 * 9 7 5 11 11 H 1.48508 * 109.46998 * 209.99892 * 9 7 5 12 12 H 1.48496 * 109.47127 * 329.99931 * 9 7 5 13 13 C 1.34770 * 120.00118 * 85.00041 * 3 2 1 14 14 O 1.21368 * 119.99997 * 4.02200 * 13 3 2 15 15 C 1.49339 * 119.99941 * 184.03242 * 13 3 2 16 16 O 1.21381 * 120.00078 * 354.69292 * 15 13 3 17 17 N 1.34783 * 120.00204 * 174.97339 * 15 13 3 18 18 C 1.39929 * 120.00296 * 179.72327 * 17 15 13 19 19 C 1.40457 * 125.97602 * 359.71045 * 18 17 15 20 20 C 1.35220 * 107.86339 * 179.88886 * 19 18 17 21 21 C 1.50702 * 126.06327 * 180.13287 * 20 19 18 22 22 N 1.34987 * 107.87480 * 0.37436 * 20 19 18 23 23 C 1.46500 * 125.97116 * 179.78475 * 22 20 19 24 24 N 1.31274 * 125.97765 * 180.02562 * 18 17 15 25 25 H 1.08997 * 109.47218 * 300.00204 * 1 2 3 26 26 H 1.09004 * 109.46734 * 59.99910 * 1 2 3 27 27 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47218 * 239.99796 * 2 1 3 29 29 H 1.09000 * 109.46872 * 119.99625 * 2 1 3 30 30 H 1.09005 * 109.47237 * 23.15119 * 4 3 2 31 31 H 1.08994 * 109.47111 * 143.14615 * 4 3 2 32 32 H 0.96994 * 120.00192 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99326 * 359.71661 * 17 15 13 34 34 H 1.07991 * 126.06880 * 0.02562 * 19 18 17 35 35 H 1.08999 * 109.47313 * 270.28375 * 21 20 19 36 36 H 1.09004 * 109.46818 * 30.27909 * 21 20 19 37 37 H 1.09000 * 109.47084 * 150.28177 * 21 20 19 38 38 H 1.08998 * 109.47215 * 269.99709 * 23 22 20 39 39 H 1.09000 * 109.47134 * 30.00113 * 23 22 20 40 40 H 1.09004 * 109.47414 * 149.99709 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3669 2.0349 -1.2639 5 6 3.8533 1.9315 -1.4898 6 1 4.4761 1.4295 -0.7643 7 6 4.4182 2.4787 -2.6222 8 7 5.7154 2.3889 -2.8191 9 14 3.3410 3.3477 -3.8768 10 1 3.2423 4.7886 -3.5312 11 1 3.9395 3.2027 -5.2282 12 1 1.9849 2.7427 -3.8686 13 6 2.1471 2.0505 1.1627 14 8 1.9285 1.4865 2.2149 15 6 2.5584 3.4861 1.1563 16 8 2.8698 4.0236 0.1135 17 7 2.5891 4.1835 2.3093 18 6 2.9801 5.5271 2.3042 19 6 3.3694 6.2688 1.1768 20 6 3.6674 7.5222 1.5875 21 6 4.1285 8.6573 0.7100 22 7 3.4837 7.5749 2.9238 23 6 3.6973 8.7471 3.7761 24 7 3.0526 6.3132 3.3530 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8400 1.5459 -2.0833 31 1 2.0780 3.0850 -1.2216 32 1 6.1129 2.7742 -3.6156 33 1 2.3401 3.7540 3.1426 34 1 3.4196 5.9036 0.1617 35 1 5.2164 8.6466 0.6439 36 1 3.7028 8.5418 -0.2869 37 1 3.7997 9.6042 1.1381 38 1 4.7272 8.7540 4.1331 39 1 3.5057 9.6536 3.2020 40 1 3.0180 8.7060 4.6276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446880176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:55 Heat of formation + Delta-G solvation = 36.636770 kcal Electronic energy + Delta-G solvation = -24144.448521 eV Core-core repulsion = 20576.603517 eV Total energy + Delta-G solvation = -3567.845004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28985 -40.10306 -38.04373 -35.91348 -34.64595 -32.59060 -32.19170 -31.88187 -30.71308 -27.71378 -26.96223 -26.60452 -24.74842 -22.70042 -22.26471 -20.50730 -20.08726 -18.86876 -17.04394 -16.88913 -16.69657 -16.23433 -15.77791 -15.47495 -15.20397 -14.92030 -14.07195 -13.96277 -13.80820 -13.51777 -13.24995 -13.14873 -12.95852 -12.64338 -12.56122 -12.39548 -12.18215 -12.08423 -11.84344 -11.73295 -11.01930 -10.78573 -10.67616 -10.48758 -10.45999 -10.31645 -10.16887 -9.50779 -8.77613 -8.51913 -8.45852 -8.04726 -7.87162 -6.05253 -4.03405 1.69674 2.16015 2.21307 3.01958 3.09131 3.32535 3.37397 3.39784 3.88388 4.00619 4.43368 4.60334 4.68625 4.90881 5.00023 5.09716 5.28417 5.28587 5.44944 5.48478 5.58758 5.60407 5.71163 5.78156 5.91345 6.05294 6.09702 6.18847 6.40288 6.45208 6.48129 6.90363 7.05906 7.13852 7.20251 7.30211 7.58139 7.86232 8.00896 8.24120 8.46674 8.59435 8.96233 9.54825 11.08071 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.005792 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.904695 B = 4832.840035 C = 6445.300158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.553 5.553 4 C 0.190 3.810 5 C -0.520 4.520 6 H 0.072 0.928 7 C 0.080 3.920 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.516 3.484 14 O -0.552 6.552 15 C 0.506 3.494 16 O -0.440 6.440 17 N -0.621 5.621 18 C 0.310 3.690 19 C -0.261 4.261 20 C 0.086 3.914 21 C -0.089 4.089 22 N -0.374 5.374 23 C 0.108 3.892 24 N -0.329 5.329 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.421 0.579 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 9.967 8.003 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.283 5.283 4 C 0.070 3.930 5 C -0.558 4.558 6 H 0.090 0.910 7 C -0.123 4.123 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.192 1.192 13 C 0.298 3.702 14 O -0.432 6.432 15 C 0.287 3.713 16 O -0.307 6.307 17 N -0.273 5.273 18 C 0.055 3.945 19 C -0.291 4.291 20 C -0.041 4.041 21 C -0.147 4.147 22 N -0.160 5.160 23 C -0.034 4.034 24 N -0.160 5.160 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.194 0.806 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.106 10.231 8.861 15.287 hybrid contribution -0.243 0.207 -1.079 1.125 sum -7.349 10.438 7.783 14.951 Atomic orbital electron populations 1.22136 0.96226 1.01846 1.02167 1.21472 0.93682 0.82408 1.03574 1.47933 1.59566 1.13174 1.07628 1.20510 0.97756 0.95115 0.79667 1.21132 0.90191 1.37142 1.07380 0.90955 1.24736 0.94712 0.95156 0.97648 1.69895 1.10247 1.45585 1.27854 0.86873 0.80976 0.81181 0.80751 1.19669 1.21416 1.19195 1.19471 0.79482 0.86632 0.84588 1.90679 1.52312 1.69389 1.30828 1.20345 0.79657 0.88159 0.83165 1.90769 1.40786 1.69523 1.29611 1.42347 1.65999 1.07035 1.11917 1.19042 0.97322 0.85388 0.92760 1.21746 1.13941 0.91960 1.01499 1.21103 1.00934 0.97469 0.84582 1.20437 1.02129 0.93534 0.98638 1.47920 1.54172 1.08682 1.05182 1.21741 1.02680 0.83985 0.94967 1.77334 1.28416 0.90349 1.19869 0.92516 0.92486 0.91763 0.89448 0.90386 0.95192 0.91509 0.92652 0.74197 0.80640 0.90073 0.89378 0.91403 0.91060 0.89713 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.20 37.16 0.38 -1.96 16 2 C 0.11 1.91 6.08 -4.04 -0.02 1.88 16 3 N -0.55 -11.47 2.49 -175.61 -0.44 -11.90 16 4 C 0.19 4.40 3.81 -5.19 -0.02 4.38 16 5 C -0.52 -14.37 8.91 -34.44 -0.31 -14.68 16 6 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 9 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.52 10.73 7.63 -11.64 -0.09 10.65 16 14 O -0.55 -11.47 16.12 5.48 0.09 -11.38 16 15 C 0.51 10.44 7.74 -11.63 -0.09 10.35 16 16 O -0.44 -10.09 9.52 5.47 0.05 -10.04 16 17 N -0.62 -11.33 5.43 -11.58 -0.06 -11.39 16 18 C 0.31 5.73 8.10 -154.55 -1.25 4.47 16 19 C -0.26 -4.77 9.51 -39.82 -0.38 -5.15 16 20 C 0.09 1.25 6.92 -82.28 -0.57 0.68 16 21 C -0.09 -0.89 10.11 36.01 0.36 -0.53 16 22 N -0.37 -5.25 4.01 -63.90 -0.26 -5.51 16 23 C 0.11 0.91 11.27 59.85 0.67 1.58 16 24 N -0.33 -5.61 12.60 31.41 0.40 -5.22 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 29 H 0.08 1.33 7.52 -51.93 -0.39 0.94 16 30 H 0.03 0.67 7.08 -51.93 -0.37 0.31 16 31 H 0.07 1.60 4.80 -51.94 -0.25 1.35 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.42 6.86 8.30 -40.82 -0.34 6.52 16 34 H 0.18 3.56 5.91 -52.49 -0.31 3.25 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.49 7.07 -51.93 -0.37 0.12 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.48 7.04 -51.93 -0.37 0.12 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -34.15 337.22 -5.80 -39.95 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.36 Total: 6.54 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -1.41 Total: 13.86 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.41 Total: -60.42 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.14 Total: -21.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.15 -5.80 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446880176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.586 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds