Wall clock time and date at job start Tue Mar 31 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 C 1.46500 * 119.99867 * 264.99229 * 3 2 1 5 5 C 1.50700 * 109.47299 * 263.15225 * 4 3 2 6 6 H 1.07996 * 120.00177 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00012 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99940 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47314 * 90.00271 * 9 7 5 11 11 H 1.48508 * 109.46998 * 209.99892 * 9 7 5 12 12 H 1.48496 * 109.47127 * 329.99931 * 9 7 5 13 13 C 1.34770 * 120.00118 * 85.00041 * 3 2 1 14 14 O 1.21368 * 119.99997 * 4.02200 * 13 3 2 15 15 C 1.49339 * 119.99941 * 184.03242 * 13 3 2 16 16 O 1.21381 * 120.00078 * 354.69292 * 15 13 3 17 17 N 1.34783 * 120.00204 * 174.97339 * 15 13 3 18 18 C 1.39929 * 120.00296 * 179.72327 * 17 15 13 19 19 C 1.40457 * 125.97602 * 359.71045 * 18 17 15 20 20 C 1.35220 * 107.86339 * 179.88886 * 19 18 17 21 21 C 1.50702 * 126.06327 * 180.13287 * 20 19 18 22 22 N 1.34987 * 107.87480 * 0.37436 * 20 19 18 23 23 C 1.46500 * 125.97116 * 179.78475 * 22 20 19 24 24 N 1.31274 * 125.97765 * 180.02562 * 18 17 15 25 25 H 1.08997 * 109.47218 * 300.00204 * 1 2 3 26 26 H 1.09004 * 109.46734 * 59.99910 * 1 2 3 27 27 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47218 * 239.99796 * 2 1 3 29 29 H 1.09000 * 109.46872 * 119.99625 * 2 1 3 30 30 H 1.09005 * 109.47237 * 23.15119 * 4 3 2 31 31 H 1.08994 * 109.47111 * 143.14615 * 4 3 2 32 32 H 0.96994 * 120.00192 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99326 * 359.71661 * 17 15 13 34 34 H 1.07991 * 126.06880 * 0.02562 * 19 18 17 35 35 H 1.08999 * 109.47313 * 270.28375 * 21 20 19 36 36 H 1.09004 * 109.46818 * 30.27909 * 21 20 19 37 37 H 1.09000 * 109.47084 * 150.28177 * 21 20 19 38 38 H 1.08998 * 109.47215 * 269.99709 * 23 22 20 39 39 H 1.09000 * 109.47134 * 30.00113 * 23 22 20 40 40 H 1.09004 * 109.47414 * 149.99709 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3669 2.0349 -1.2639 5 6 3.8533 1.9315 -1.4898 6 1 4.4761 1.4295 -0.7643 7 6 4.4182 2.4787 -2.6222 8 7 5.7154 2.3889 -2.8191 9 14 3.3410 3.3477 -3.8768 10 1 3.2423 4.7886 -3.5312 11 1 3.9395 3.2027 -5.2282 12 1 1.9849 2.7427 -3.8686 13 6 2.1471 2.0505 1.1627 14 8 1.9285 1.4865 2.2149 15 6 2.5584 3.4861 1.1563 16 8 2.8698 4.0236 0.1135 17 7 2.5891 4.1835 2.3093 18 6 2.9801 5.5271 2.3042 19 6 3.3694 6.2688 1.1768 20 6 3.6674 7.5222 1.5875 21 6 4.1285 8.6573 0.7100 22 7 3.4837 7.5749 2.9238 23 6 3.6973 8.7471 3.7761 24 7 3.0526 6.3132 3.3530 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8400 1.5459 -2.0833 31 1 2.0780 3.0850 -1.2216 32 1 6.1129 2.7742 -3.6156 33 1 2.3401 3.7540 3.1426 34 1 3.4196 5.9036 0.1617 35 1 5.2164 8.6466 0.6439 36 1 3.7028 8.5418 -0.2869 37 1 3.7997 9.6042 1.1381 38 1 4.7272 8.7540 4.1331 39 1 3.5057 9.6536 3.2020 40 1 3.0180 8.7060 4.6276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446880176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:55 Heat of formation + Delta-G solvation = 12.318340 kcal Electronic energy + Delta-G solvation = -24145.503047 eV Core-core repulsion = 20576.603517 eV Total energy + Delta-G solvation = -3568.899530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60034 -41.64669 -39.63348 -37.55148 -36.09032 -34.65689 -33.37415 -32.91201 -32.23066 -29.62196 -28.02592 -27.77071 -26.08155 -24.54424 -23.76450 -21.82583 -21.45441 -20.31448 -19.11966 -18.52050 -18.13243 -17.57290 -17.14748 -16.83108 -16.59835 -16.55157 -15.91372 -15.49021 -15.09901 -14.80550 -14.71172 -14.37378 -14.03587 -13.93094 -13.89653 -13.73171 -13.45540 -13.28226 -13.21920 -12.91841 -12.66507 -12.56671 -12.22749 -12.01882 -11.85269 -11.76320 -11.74846 -11.62899 -10.76313 -10.30299 -9.77140 -9.63404 -9.28107 -8.23731 -6.26815 0.16864 0.86443 0.91353 1.40005 1.45461 1.51027 1.66230 1.76596 2.29068 2.40387 2.51933 3.13552 3.24503 3.65711 3.82676 4.14223 4.23447 4.33456 4.43609 4.48470 4.53668 4.58192 4.67323 4.70525 4.76172 4.81098 4.90071 4.95384 5.03336 5.08504 5.15256 5.31408 5.46940 5.53447 5.65116 5.90156 6.07793 6.12348 6.34485 6.60190 6.70704 6.77041 6.95118 7.35609 8.93478 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.005792 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.904695 B = 4832.840035 C = 6445.300158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.558 5.558 4 C 0.201 3.799 5 C -0.518 4.518 6 H 0.023 0.977 7 C 0.022 3.978 8 N -0.948 5.948 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.238 1.238 13 C 0.513 3.487 14 O -0.554 6.554 15 C 0.504 3.496 16 O -0.469 6.469 17 N -0.610 5.610 18 C 0.285 3.715 19 C -0.307 4.307 20 C 0.105 3.895 21 C -0.088 4.088 22 N -0.364 5.364 23 C 0.093 3.907 24 N -0.343 5.343 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.266 0.734 33 H 0.428 0.572 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 11.962 8.066 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.288 5.288 4 C 0.080 3.920 5 C -0.556 4.556 6 H 0.041 0.959 7 C -0.176 4.176 8 N -0.589 5.589 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.161 1.161 13 C 0.295 3.705 14 O -0.435 6.435 15 C 0.285 3.715 16 O -0.339 6.339 17 N -0.262 5.262 18 C 0.031 3.969 19 C -0.337 4.337 20 C -0.024 4.024 21 C -0.146 4.146 22 N -0.149 5.149 23 C -0.046 4.046 24 N -0.175 5.175 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.784 12.210 8.996 17.527 hybrid contribution 0.369 -0.341 -0.918 1.046 sum -8.415 11.870 8.079 16.642 Atomic orbital electron populations 1.22056 0.93383 1.03837 1.01947 1.21767 0.95980 0.80443 1.03728 1.48002 1.59595 1.14479 1.06746 1.20227 0.94788 0.95709 0.81275 1.21267 0.92172 1.36046 1.06115 0.95876 1.25640 0.95996 0.95943 1.00041 1.70053 1.12528 1.47379 1.28937 0.85814 0.80323 0.79782 0.77640 1.19606 1.20930 1.16067 1.19564 0.79412 0.86811 0.84700 1.90662 1.52531 1.69537 1.30739 1.20396 0.79470 0.88207 0.83471 1.90757 1.42460 1.69991 1.30647 1.42176 1.65167 1.07372 1.11476 1.19197 0.98801 0.85393 0.93474 1.21655 1.17449 0.94103 1.00526 1.21619 0.98293 0.97329 0.85200 1.20629 1.02769 0.93307 0.97863 1.48428 1.51986 1.08746 1.05716 1.22293 1.04039 0.82974 0.95299 1.77248 1.28810 0.91666 1.19741 0.93298 0.92067 0.88649 0.88983 0.90615 0.93288 0.91561 0.92555 0.73402 0.83419 0.88881 0.89473 0.87533 0.89389 0.86030 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 10.20 71.98 0.73 -3.30 16 2 C 0.10 3.42 6.08 86.38 0.53 3.95 16 3 N -0.56 -23.29 2.49 -827.86 -2.06 -25.35 16 4 C 0.20 9.35 3.81 85.63 0.33 9.67 16 5 C -0.52 -29.51 8.91 25.60 0.23 -29.28 16 6 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 7 C 0.02 1.24 5.47 84.65 0.46 1.71 16 8 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 9 Si 0.94 43.49 27.47 68.60 1.88 45.37 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 13 C 0.51 21.79 7.63 87.24 0.67 22.45 16 14 O -0.55 -23.28 16.12 -3.30 -0.05 -23.33 16 15 C 0.50 21.60 7.74 87.23 0.67 22.28 16 16 O -0.47 -22.46 9.52 -3.34 -0.03 -22.50 16 17 N -0.61 -23.09 5.43 -308.90 -1.68 -24.77 16 18 C 0.29 10.78 8.10 133.40 1.08 11.87 16 19 C -0.31 -11.50 9.51 22.11 0.21 -11.29 16 20 C 0.10 2.91 6.92 41.38 0.29 3.20 16 21 C -0.09 -1.51 10.11 71.24 0.72 -0.79 16 22 N -0.36 -9.49 4.01 -356.07 -1.43 -10.92 16 23 C 0.09 1.23 11.27 127.77 1.44 2.67 16 24 N -0.34 -11.57 12.60 -54.54 -0.69 -12.26 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.97 8.03 -2.39 -0.02 2.95 16 29 H 0.08 2.56 7.52 -2.39 -0.02 2.54 16 30 H 0.05 2.11 7.08 -2.38 -0.02 2.09 16 31 H 0.07 3.17 4.80 -2.45 -0.01 3.16 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.43 14.40 8.30 -92.71 -0.77 13.63 16 34 H 0.15 6.36 5.91 -2.92 -0.02 6.35 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.55 16 37 H 0.11 1.01 7.07 -2.39 -0.02 1.00 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 0.75 7.04 -2.39 -0.02 0.74 16 40 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -78.05 337.22 3.85 -74.20 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.25 Total: 25.55 kcal Atomic # 6 Polarization: 25.78 SS G_CDS: 7.36 Total: 33.14 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -5.55 Total: -132.43 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.09 Total: -45.83 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -78.05 3.85 -74.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446880176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.515 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds