Wall clock time and date at job start Tue Mar 31 2020 04:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47161 * 2 1 4 4 C 1.34776 * 119.99994 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99773 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99827 * 179.97438 * 4 3 2 7 7 C 1.50706 * 109.46972 * 180.02562 * 6 4 3 8 8 O 1.21293 * 120.00109 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99978 * 180.02562 * 7 6 4 10 10 C 1.39471 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.36110 * 126.21626 * 0.14378 * 10 9 7 12 12 C 1.39762 * 107.82869 * 180.26709 * 11 10 9 13 13 C 1.50694 * 125.84077 * 179.72419 * 12 11 10 14 14 N 1.30855 * 108.31847 * 359.75600 * 12 11 10 15 15 N 1.35266 * 126.21450 * 180.02562 * 10 9 7 16 16 C 1.46491 * 126.04623 * 359.97438 * 15 10 9 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 10 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47214 * 300.00593 * 1 2 3 27 27 H 1.09002 * 109.46561 * 60.00454 * 1 2 3 28 28 H 1.08995 * 109.47067 * 239.99938 * 2 1 3 29 29 H 1.09002 * 109.46561 * 119.99546 * 2 1 3 30 30 H 0.96998 * 119.99376 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47569 * 59.99930 * 6 4 3 32 32 H 1.09002 * 109.47150 * 299.99490 * 6 4 3 33 33 H 0.97004 * 120.00013 * 359.97438 * 9 7 6 34 34 H 1.07999 * 126.09101 * 0.05355 * 11 10 9 35 35 H 1.09003 * 109.47188 * 270.01578 * 13 12 11 36 36 H 1.08998 * 109.47119 * 30.01737 * 13 12 11 37 37 H 1.09003 * 109.47108 * 150.01312 * 13 12 11 38 38 H 1.09004 * 109.47166 * 149.71543 * 16 15 10 39 39 H 1.08994 * 109.47507 * 29.71250 * 16 15 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3528 3.0483 0.0001 8 8 5.9593 1.9979 0.0010 9 7 6.0267 4.2155 0.0001 10 6 7.4214 4.2155 0.0008 11 6 8.2256 3.1173 -0.0014 12 6 9.5519 3.5582 0.0065 13 6 10.7745 2.6772 0.0131 14 7 9.5503 4.8667 0.0078 15 7 8.2206 5.3068 0.0014 16 6 7.7743 6.7021 0.0010 17 6 7.6292 7.1826 -1.4200 18 1 7.8472 6.5153 -2.2407 19 6 7.2121 8.4724 -1.6724 20 7 6.9463 9.2849 -0.6730 21 14 7.0249 9.0656 -3.4337 22 1 6.0257 8.2214 -4.1368 23 1 6.5679 10.4786 -3.4342 24 1 8.3328 8.9687 -4.1304 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3880 2.1185 -0.0004 31 1 3.4820 3.5627 0.8894 32 1 3.4829 3.5616 -0.8906 33 1 5.5417 5.0556 -0.0003 34 1 7.8974 2.0885 -0.0047 35 1 11.0632 2.4641 1.0423 36 1 10.5520 1.7431 -0.5027 37 1 11.5925 3.1873 -0.4956 38 1 8.5084 7.3186 0.5198 39 1 6.8131 6.7763 0.5095 40 1 6.6532 10.1924 -0.8506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540958491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:55 Heat of formation + Delta-G solvation = 2.098712 kcal Electronic energy + Delta-G solvation = -23184.641891 eV Core-core repulsion = 19615.299205 eV Total energy + Delta-G solvation = -3569.342687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87951 -39.99056 -38.51423 -35.42326 -34.57978 -33.71248 -32.09975 -31.74056 -30.00777 -29.00695 -27.80345 -26.00421 -23.59179 -22.85755 -21.84672 -20.61408 -19.64114 -19.15024 -17.29043 -17.00853 -16.69017 -16.19720 -16.11101 -15.68320 -15.22660 -14.84646 -14.42116 -14.22463 -13.74802 -13.66603 -13.48788 -12.80976 -12.75124 -12.74567 -12.45959 -12.35353 -12.15936 -11.94404 -11.72564 -11.69111 -11.54110 -11.08656 -10.87518 -10.35747 -10.27214 -10.13110 -9.81759 -9.69606 -9.25044 -9.22442 -8.72291 -7.86700 -7.37002 -6.33723 -4.42056 2.33329 2.57904 2.60137 3.13370 3.17247 3.21831 3.22843 3.27820 3.66773 3.86265 4.24113 4.38280 4.63745 4.76093 4.82992 4.99502 5.00252 5.04942 5.11504 5.42104 5.48859 5.59046 5.69182 5.72014 6.08235 6.21169 6.22897 6.25708 6.33344 6.49514 6.73724 6.86420 7.07069 7.28133 7.56714 7.60200 7.68537 7.80491 7.97873 8.13909 8.41576 8.64266 8.74531 9.25373 10.73279 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004127 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.658871 B = 6782.775089 C = 8581.415460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.513 3.487 5 O -0.491 6.491 6 C -0.161 4.161 7 C 0.516 3.484 8 O -0.471 6.471 9 N -0.643 5.643 10 C 0.304 3.696 11 C -0.296 4.296 12 C 0.051 3.949 13 C -0.062 4.062 14 N -0.287 5.287 15 N -0.346 5.346 16 C 0.257 3.743 17 C -0.540 4.540 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.891 5.891 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.414 0.586 34 H 0.162 0.838 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 -12.301 2.532 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.394 5.394 4 C 0.297 3.703 5 O -0.362 6.362 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.340 6.340 9 N -0.291 5.291 10 C 0.081 3.919 11 C -0.328 4.328 12 C -0.114 4.114 13 C -0.121 4.121 14 N -0.112 5.112 15 N -0.132 5.132 16 C 0.140 3.860 17 C -0.579 4.579 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.199 1.199 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.251 0.749 34 H 0.179 0.821 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.638 -12.410 2.591 17.210 hybrid contribution -1.444 0.922 -0.971 1.970 sum -13.082 -11.488 1.620 17.485 Atomic orbital electron populations 1.22004 0.94498 1.03195 1.02515 1.21264 0.94042 0.83001 1.02499 1.46019 1.06892 1.08909 1.77541 1.19948 0.82315 0.90717 0.77321 1.90877 1.54367 1.45383 1.45609 1.21523 0.94228 0.97380 1.07277 1.19840 0.88956 0.83283 0.77931 1.90790 1.68430 1.30262 1.44537 1.42764 1.03389 1.10200 1.72795 1.17894 0.81842 0.89445 1.02674 1.21305 0.90704 0.98926 1.21836 1.22028 0.95514 0.92047 1.01824 1.20016 0.93016 0.97037 1.02009 1.77343 0.96344 1.11587 1.25955 1.49325 1.02008 1.06652 1.55181 1.19590 0.95782 0.71839 0.98829 1.21326 1.47054 0.98060 0.91413 0.91750 1.24935 0.94589 0.96006 0.98161 1.69912 1.44681 1.07157 1.31113 0.86409 0.78928 0.77643 0.83679 1.20007 1.20919 1.19864 0.90853 0.91969 0.91947 0.91520 0.91529 0.76679 0.85643 0.85512 0.74916 0.82103 0.91402 0.91129 0.91549 0.92613 0.93845 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.03 37.16 0.37 -0.39 16 2 C 0.12 0.90 6.39 -4.04 -0.03 0.87 16 3 N -0.74 -6.01 5.56 -60.29 -0.33 -6.35 16 4 C 0.51 6.27 7.82 -10.99 -0.09 6.19 16 5 O -0.49 -8.66 14.18 -18.96 -0.27 -8.93 16 6 C -0.16 -1.63 6.19 -29.03 -0.18 -1.81 16 7 C 0.52 8.32 7.79 -10.98 -0.09 8.23 16 8 O -0.47 -9.51 11.31 -18.97 -0.21 -9.72 16 9 N -0.64 -11.17 5.41 -11.46 -0.06 -11.23 16 10 C 0.30 6.57 7.66 -153.16 -1.17 5.39 16 11 C -0.30 -6.37 9.58 -39.78 -0.38 -6.75 16 12 C 0.05 1.06 7.21 -82.44 -0.59 0.47 16 13 C -0.06 -0.98 10.44 36.00 0.38 -0.60 16 14 N -0.29 -6.86 12.56 33.65 0.42 -6.44 16 15 N -0.35 -8.24 3.60 -61.58 -0.22 -8.47 16 16 C 0.26 6.43 6.01 -5.20 -0.03 6.40 16 17 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 18 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 19 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 21 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.40 1.91 8.47 -40.82 -0.35 1.57 16 31 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.41 6.36 7.96 -40.82 -0.32 6.03 16 34 H 0.16 3.47 5.83 -52.49 -0.31 3.17 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.04 1.04 7.49 -51.93 -0.39 0.65 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -35.96 346.17 -7.54 -43.50 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.56 Total: 5.46 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.23 Total: 4.85 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.54 Total: -55.87 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.48 Total: -18.65 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.96 -7.54 -43.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540958491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.597 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds