Wall clock time and date at job start Tue Mar 31 2020 04:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47161 * 2 1 4 4 C 1.34776 * 119.99994 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99773 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99827 * 179.97438 * 4 3 2 7 7 C 1.50706 * 109.46972 * 180.02562 * 6 4 3 8 8 O 1.21293 * 120.00109 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99978 * 180.02562 * 7 6 4 10 10 C 1.39471 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.36110 * 126.21626 * 0.14378 * 10 9 7 12 12 C 1.39762 * 107.82869 * 180.26709 * 11 10 9 13 13 C 1.50694 * 125.84077 * 179.72419 * 12 11 10 14 14 N 1.30855 * 108.31847 * 359.75600 * 12 11 10 15 15 N 1.35266 * 126.21450 * 180.02562 * 10 9 7 16 16 C 1.46491 * 126.04623 * 359.97438 * 15 10 9 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 10 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47214 * 300.00593 * 1 2 3 27 27 H 1.09002 * 109.46561 * 60.00454 * 1 2 3 28 28 H 1.08995 * 109.47067 * 239.99938 * 2 1 3 29 29 H 1.09002 * 109.46561 * 119.99546 * 2 1 3 30 30 H 0.96998 * 119.99376 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47569 * 59.99930 * 6 4 3 32 32 H 1.09002 * 109.47150 * 299.99490 * 6 4 3 33 33 H 0.97004 * 120.00013 * 359.97438 * 9 7 6 34 34 H 1.07999 * 126.09101 * 0.05355 * 11 10 9 35 35 H 1.09003 * 109.47188 * 270.01578 * 13 12 11 36 36 H 1.08998 * 109.47119 * 30.01737 * 13 12 11 37 37 H 1.09003 * 109.47108 * 150.01312 * 13 12 11 38 38 H 1.09004 * 109.47166 * 149.71543 * 16 15 10 39 39 H 1.08994 * 109.47507 * 29.71250 * 16 15 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3528 3.0483 0.0001 8 8 5.9593 1.9979 0.0010 9 7 6.0267 4.2155 0.0001 10 6 7.4214 4.2155 0.0008 11 6 8.2256 3.1173 -0.0014 12 6 9.5519 3.5582 0.0065 13 6 10.7745 2.6772 0.0131 14 7 9.5503 4.8667 0.0078 15 7 8.2206 5.3068 0.0014 16 6 7.7743 6.7021 0.0010 17 6 7.6292 7.1826 -1.4200 18 1 7.8472 6.5153 -2.2407 19 6 7.2121 8.4724 -1.6724 20 7 6.9463 9.2849 -0.6730 21 14 7.0249 9.0656 -3.4337 22 1 6.0257 8.2214 -4.1368 23 1 6.5679 10.4786 -3.4342 24 1 8.3328 8.9687 -4.1304 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3880 2.1185 -0.0004 31 1 3.4820 3.5627 0.8894 32 1 3.4829 3.5616 -0.8906 33 1 5.5417 5.0556 -0.0003 34 1 7.8974 2.0885 -0.0047 35 1 11.0632 2.4641 1.0423 36 1 10.5520 1.7431 -0.5027 37 1 11.5925 3.1873 -0.4956 38 1 8.5084 7.3186 0.5198 39 1 6.8131 6.7763 0.5095 40 1 6.6532 10.1924 -0.8506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540958491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:55 Heat of formation + Delta-G solvation = -23.541145 kcal Electronic energy + Delta-G solvation = -23185.753719 eV Core-core repulsion = 19615.299205 eV Total energy + Delta-G solvation = -3570.454514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42867 -41.18936 -39.74227 -36.35908 -36.07872 -35.50968 -33.82929 -32.70632 -31.01556 -30.51251 -29.27252 -27.80193 -24.85147 -24.24114 -23.02234 -21.70131 -21.17674 -20.59861 -18.87320 -18.38454 -18.32506 -17.23310 -17.18735 -16.83299 -16.54553 -16.31794 -15.91386 -15.65496 -15.03061 -14.77175 -14.57248 -14.44605 -14.35598 -14.03445 -13.60978 -13.37242 -13.25712 -13.14410 -13.05128 -12.87030 -12.68940 -12.64780 -12.30716 -12.27023 -11.89217 -11.66980 -11.48442 -11.11147 -10.74559 -10.53489 -10.04757 -9.61794 -9.04229 -8.34863 -6.52268 0.83765 1.29478 1.38190 1.41214 1.49599 1.63208 1.70391 2.04904 2.08120 2.33902 2.50505 2.95553 3.36196 3.83731 3.87632 4.18744 4.24104 4.26044 4.35248 4.39907 4.56056 4.64166 4.73886 4.85704 4.88130 4.92880 4.96528 4.99342 5.09732 5.22134 5.25001 5.30294 5.51834 5.52576 5.78715 5.96308 6.18486 6.33409 6.59251 6.59983 7.00568 7.09361 7.19846 7.35356 8.71381 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004127 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.658871 B = 6782.775089 C = 8581.415460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 N -0.717 5.717 4 C 0.508 3.492 5 O -0.555 6.555 6 C -0.146 4.146 7 C 0.511 3.489 8 O -0.513 6.513 9 N -0.638 5.638 10 C 0.304 3.696 11 C -0.314 4.314 12 C 0.057 3.943 13 C -0.061 4.061 14 N -0.332 5.332 15 N -0.366 5.366 16 C 0.272 3.728 17 C -0.557 4.557 18 H 0.046 0.954 19 C 0.030 3.970 20 N -0.913 5.913 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.281 1.281 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.420 0.580 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.424 0.576 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.501 -12.006 1.925 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.372 5.372 4 C 0.293 3.707 5 O -0.432 6.432 6 C -0.188 4.188 7 C 0.298 3.702 8 O -0.385 6.385 9 N -0.288 5.288 10 C 0.081 3.919 11 C -0.346 4.346 12 C -0.108 4.108 13 C -0.119 4.119 14 N -0.157 5.157 15 N -0.152 5.152 16 C 0.154 3.846 17 C -0.596 4.596 18 H 0.064 0.936 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.207 1.207 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.257 0.743 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.262 0.738 34 H 0.178 0.822 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.998 -12.087 1.995 18.602 hybrid contribution -0.769 0.750 -0.740 1.304 sum -14.767 -11.337 1.255 18.660 Atomic orbital electron populations 1.21945 0.91576 1.04106 1.03509 1.21343 0.96303 0.82503 1.01141 1.45873 1.05965 1.09932 1.75434 1.20341 0.83038 0.90868 0.76422 1.90865 1.56174 1.47234 1.48922 1.21605 0.89174 0.96930 1.11114 1.20976 0.91267 0.81956 0.75998 1.90777 1.69866 1.31652 1.46172 1.42976 1.01705 1.11428 1.72665 1.18272 0.83747 0.88741 1.01114 1.21448 0.91237 0.98859 1.23011 1.22852 0.97145 0.91637 0.99123 1.20210 0.91044 0.96826 1.03823 1.77289 0.96879 1.13108 1.28402 1.49171 1.02575 1.06525 1.56915 1.19247 0.95133 0.72440 0.97808 1.21379 1.48050 0.98497 0.91627 0.93584 1.25652 0.93812 0.95751 1.01990 1.69981 1.44613 1.07561 1.32904 0.85459 0.78615 0.77802 0.78911 1.18752 1.19612 1.20717 0.90074 0.90849 0.90956 0.93073 0.92925 0.74269 0.81262 0.81713 0.73753 0.82245 0.89247 0.89170 0.90735 0.95625 0.92911 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.03 71.98 0.72 -0.32 16 2 C 0.11 1.60 6.39 86.38 0.55 2.15 16 3 N -0.72 -10.03 5.56 -463.05 -2.57 -12.60 16 4 C 0.51 11.67 7.82 87.66 0.69 12.36 16 5 O -0.56 -19.89 14.18 20.42 0.29 -19.60 16 6 C -0.15 -2.54 6.19 29.10 0.18 -2.36 16 7 C 0.51 16.04 7.79 87.66 0.68 16.72 16 8 O -0.51 -21.02 11.31 20.37 0.23 -20.79 16 9 N -0.64 -21.81 5.41 -308.55 -1.67 -23.48 16 10 C 0.30 13.33 7.66 131.32 1.01 14.34 16 11 C -0.31 -13.74 9.58 22.14 0.21 -13.53 16 12 C 0.06 2.44 7.21 43.07 0.31 2.75 16 13 C -0.06 -1.84 10.44 71.23 0.74 -1.10 16 14 N -0.33 -16.25 12.56 -47.45 -0.60 -16.84 16 15 N -0.37 -17.88 3.60 -348.73 -1.26 -19.13 16 16 C 0.27 13.94 6.01 85.64 0.51 14.46 16 17 C -0.56 -30.23 9.39 25.60 0.24 -29.99 16 18 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 19 C 0.03 1.56 5.46 84.66 0.46 2.02 16 20 N -0.91 -49.01 13.29 21.45 0.28 -48.73 16 21 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.42 2.45 8.47 -92.71 -0.79 1.66 16 31 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.42 12.50 7.96 -92.70 -0.74 11.77 16 34 H 0.16 7.06 5.83 -2.91 -0.02 7.04 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.05 2.55 7.49 -2.39 -0.02 2.53 16 40 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 Total: -1.00 -81.83 346.17 2.60 -79.23 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.44 Total: 21.08 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.31 Total: 17.50 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.81 Total: -120.79 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: 0.52 Total: -40.40 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -81.83 2.60 -79.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540958491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.690 kcal (2) G-P(sol) polarization free energy of solvation -81.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds