Wall clock time and date at job start Tue Mar 31 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46495 * 109.47331 * 239.99927 * 2 1 3 5 5 C 1.35228 * 125.99263 * 84.99583 * 4 2 1 6 6 C 1.35857 * 107.64113 * 179.97438 * 5 4 2 7 7 N 1.40478 * 126.11283 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99614 * 180.02562 * 7 6 5 9 9 O 1.21400 * 120.00596 * 359.97438 * 8 7 6 10 10 C 1.49328 * 119.99844 * 180.02562 * 8 7 6 11 11 O 1.21361 * 120.00081 * 354.16204 * 10 8 7 12 12 N 1.34781 * 119.99938 * 174.16673 * 10 8 7 13 13 C 1.46497 * 120.00173 * 3.61985 * 12 10 8 14 14 C 1.46502 * 119.99717 * 183.62230 * 12 10 8 15 15 C 1.50700 * 109.46961 * 90.00120 * 14 12 10 16 16 H 1.07999 * 120.00453 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99936 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00289 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47051 * 119.99961 * 19 17 15 22 22 H 1.48503 * 109.47190 * 239.99906 * 19 17 15 23 23 C 1.40343 * 107.76787 * 0.02562 * 6 5 4 24 24 N 1.30819 * 108.20991 * 359.75198 * 23 6 5 25 25 H 1.09000 * 109.47148 * 59.99855 * 1 2 3 26 26 H 1.08998 * 109.47254 * 300.00392 * 1 2 3 27 27 H 1.08996 * 109.47743 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46962 * 119.99624 * 2 1 3 29 29 H 1.09001 * 109.47218 * 60.00203 * 3 2 1 30 30 H 1.09005 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47277 * 300.00066 * 3 2 1 32 32 H 1.07990 * 126.17986 * 359.94889 * 5 4 2 33 33 H 0.96998 * 120.00571 * 0.02562 * 7 6 5 34 34 H 1.09000 * 109.46422 * 83.99694 * 13 12 10 35 35 H 1.08994 * 109.47276 * 203.99725 * 13 12 10 36 36 H 1.09001 * 109.47028 * 324.00016 * 13 12 10 37 37 H 1.08998 * 109.47008 * 209.99521 * 14 12 10 38 38 H 1.09001 * 109.47199 * 329.99861 * 14 12 10 39 39 H 0.96993 * 120.00504 * 180.02562 * 18 17 15 40 40 H 1.07999 * 125.88997 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1933 -0.1372 -2.4175 6 6 2.6589 -1.1077 -3.2464 7 7 2.9726 -0.9542 -4.6070 8 6 3.4275 -2.0059 -5.3165 9 8 3.5668 -3.0858 -4.7796 10 6 3.7615 -1.8426 -6.7628 11 8 3.5243 -0.7940 -7.3257 12 7 4.3263 -2.8599 -7.4430 13 6 4.5400 -4.1515 -6.7855 14 6 4.7267 -2.6739 -8.8399 15 6 6.1498 -2.1809 -8.8932 16 1 6.7008 -2.0215 -7.9781 17 6 6.7481 -1.9322 -10.1102 18 7 6.0770 -2.1257 -11.2247 19 14 8.5118 -1.3203 -10.1763 20 1 9.0407 -1.1845 -8.7954 21 1 9.3442 -2.2902 -10.9325 22 1 8.5525 0.0006 -10.8536 23 6 2.7693 -2.2914 -2.5004 24 7 2.3907 -2.0385 -1.2740 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.9978 0.8904 -2.6857 33 1 2.8617 -0.0913 -5.0360 34 1 3.6250 -4.7416 -6.8381 35 1 5.3464 -4.6858 -7.2876 36 1 4.8073 -3.9879 -5.7415 37 1 4.6513 -3.6239 -9.3690 38 1 4.0707 -1.9422 -9.3116 39 1 6.4980 -1.9511 -12.0809 40 1 3.1116 -3.2453 -2.8735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557559206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:31 Heat of formation + Delta-G solvation = 25.561766 kcal Electronic energy + Delta-G solvation = -23227.984248 eV Core-core repulsion = 19659.658996 eV Total energy + Delta-G solvation = -3568.325252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56361 -40.10393 -37.93006 -36.19019 -35.36051 -34.10510 -32.56826 -30.38227 -29.16475 -28.00661 -27.74708 -26.14148 -24.57394 -23.14386 -22.46302 -20.74733 -20.56022 -19.03535 -17.73896 -16.98720 -16.62743 -16.20216 -15.71947 -15.39750 -15.25341 -14.94823 -14.75410 -14.35352 -14.22694 -13.74942 -13.26635 -13.07125 -13.04520 -12.64776 -12.61879 -12.36106 -12.11859 -11.91320 -11.85822 -11.62703 -11.29263 -10.97540 -10.87325 -10.81508 -10.70909 -10.45518 -10.21138 -9.65020 -9.50584 -8.74953 -8.48755 -7.86305 -7.69001 -6.09835 -4.15303 1.51634 2.00117 2.17599 2.85199 2.89961 3.28082 3.35480 3.40356 3.82243 4.07927 4.17878 4.41417 4.43872 4.58504 4.61451 4.83241 4.96815 5.01163 5.11845 5.21281 5.25015 5.33704 5.45677 5.53200 5.66916 5.68922 5.96230 6.08244 6.18597 6.55940 6.76636 6.83964 6.89891 7.27459 7.30630 7.39488 7.61708 7.84688 8.00945 8.13761 8.24642 8.65478 8.90506 9.49872 10.98384 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.003009 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.371678 B = 9303.607072 C = 9645.937424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.160 3.840 3 C -0.166 4.166 4 N -0.365 5.365 5 C 0.021 3.979 6 C 0.002 3.998 7 N -0.620 5.620 8 C 0.510 3.490 9 O -0.512 6.512 10 C 0.498 3.502 11 O -0.528 6.528 12 N -0.561 5.561 13 C 0.068 3.932 14 C 0.240 3.760 15 C -0.530 4.530 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.053 3.947 24 N -0.289 5.289 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.175 0.825 33 H 0.421 0.579 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 4.676 21.179 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 C -0.224 4.224 4 N -0.150 5.150 5 C -0.127 4.127 6 C -0.103 4.103 7 N -0.266 5.266 8 C 0.294 3.706 9 O -0.387 6.387 10 C 0.278 3.722 11 O -0.406 6.406 12 N -0.292 5.292 13 C -0.075 4.075 14 C 0.122 3.878 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.134 4.134 24 N -0.111 5.111 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.192 0.808 33 H 0.258 0.742 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.226 4.017 22.255 24.819 hybrid contribution 1.060 1.126 -1.259 1.994 sum -9.165 5.143 20.996 23.479 Atomic orbital electron populations 1.22253 0.93680 1.03387 1.03055 1.21222 0.94718 0.92694 0.85517 1.22214 1.02494 0.94022 1.03657 1.48410 1.51243 1.07519 1.07827 1.21693 1.05852 0.99180 0.85973 1.17787 1.11898 0.95035 0.85531 1.42540 1.62997 1.14224 1.06886 1.20810 0.77434 0.83646 0.88721 1.90511 1.50707 1.25751 1.71775 1.19472 0.81348 0.85346 0.86003 1.90730 1.53777 1.26869 1.69238 1.48103 1.55281 1.10878 1.14947 1.22231 1.00955 0.84508 0.99783 1.19531 0.96021 0.98403 0.73870 1.21433 0.97390 1.45196 0.92841 0.92181 1.24935 0.98454 0.95275 0.95353 1.69939 1.37038 1.48614 0.97577 0.86402 0.84114 0.78520 0.78164 1.19719 1.20859 1.20822 1.24556 0.99720 0.99863 0.89213 1.77376 1.20363 0.93163 1.20182 0.91796 0.90527 0.91553 0.87943 0.90013 0.91351 0.91405 0.80773 0.74191 0.93274 0.91227 0.88815 0.94152 0.93309 0.92629 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 9.52 37.16 0.35 -0.62 16 2 C 0.16 1.13 3.93 -67.93 -0.27 0.86 16 3 C -0.17 -0.81 8.83 37.16 0.33 -0.48 16 4 N -0.36 -3.94 3.53 -54.66 -0.19 -4.13 16 5 C 0.02 0.22 10.63 -16.91 -0.18 0.04 16 6 C 0.00 0.03 6.90 -83.95 -0.58 -0.55 16 7 N -0.62 -8.99 5.45 -10.48 -0.06 -9.04 16 8 C 0.51 8.89 7.74 -11.64 -0.09 8.80 16 9 O -0.51 -8.92 10.29 5.45 0.06 -8.86 16 10 C 0.50 10.47 7.73 -11.64 -0.09 10.38 16 11 O -0.53 -12.37 16.05 5.49 0.09 -12.29 16 12 N -0.56 -12.32 2.86 -183.52 -0.52 -12.85 16 13 C 0.07 1.24 9.55 59.85 0.57 1.81 16 14 C 0.24 6.24 5.16 -5.19 -0.03 6.21 16 15 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 16 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.05 0.77 10.84 -17.19 -0.19 0.59 16 24 N -0.29 -3.99 12.56 30.72 0.39 -3.61 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.30 7.16 -51.93 -0.37 -0.07 16 32 H 0.18 1.26 7.27 -52.49 -0.38 0.88 16 33 H 0.42 5.45 8.31 -40.82 -0.34 5.11 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 36 H 0.09 1.64 5.35 -51.94 -0.28 1.36 16 37 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.05 1.39 7.37 -51.93 -0.38 1.01 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.21 3.08 5.92 -52.49 -0.31 2.77 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -33.11 341.15 -5.38 -38.49 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.40 Total: 2.45 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -0.59 Total: 13.51 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.35 Total: -55.02 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.14 Total: -21.15 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.11 -5.38 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557559206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.048 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds