Wall clock time and date at job start Tue Mar 31 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46495 * 109.47331 * 239.99927 * 2 1 3 5 5 C 1.35228 * 125.99263 * 84.99583 * 4 2 1 6 6 C 1.35857 * 107.64113 * 179.97438 * 5 4 2 7 7 N 1.40478 * 126.11283 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99614 * 180.02562 * 7 6 5 9 9 O 1.21400 * 120.00596 * 359.97438 * 8 7 6 10 10 C 1.49328 * 119.99844 * 180.02562 * 8 7 6 11 11 O 1.21361 * 120.00081 * 354.16204 * 10 8 7 12 12 N 1.34781 * 119.99938 * 174.16673 * 10 8 7 13 13 C 1.46497 * 120.00173 * 3.61985 * 12 10 8 14 14 C 1.46502 * 119.99717 * 183.62230 * 12 10 8 15 15 C 1.50700 * 109.46961 * 90.00120 * 14 12 10 16 16 H 1.07999 * 120.00453 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99936 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00289 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47051 * 119.99961 * 19 17 15 22 22 H 1.48503 * 109.47190 * 239.99906 * 19 17 15 23 23 C 1.40343 * 107.76787 * 0.02562 * 6 5 4 24 24 N 1.30819 * 108.20991 * 359.75198 * 23 6 5 25 25 H 1.09000 * 109.47148 * 59.99855 * 1 2 3 26 26 H 1.08998 * 109.47254 * 300.00392 * 1 2 3 27 27 H 1.08996 * 109.47743 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46962 * 119.99624 * 2 1 3 29 29 H 1.09001 * 109.47218 * 60.00203 * 3 2 1 30 30 H 1.09005 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47277 * 300.00066 * 3 2 1 32 32 H 1.07990 * 126.17986 * 359.94889 * 5 4 2 33 33 H 0.96998 * 120.00571 * 0.02562 * 7 6 5 34 34 H 1.09000 * 109.46422 * 83.99694 * 13 12 10 35 35 H 1.08994 * 109.47276 * 203.99725 * 13 12 10 36 36 H 1.09001 * 109.47028 * 324.00016 * 13 12 10 37 37 H 1.08998 * 109.47008 * 209.99521 * 14 12 10 38 38 H 1.09001 * 109.47199 * 329.99861 * 14 12 10 39 39 H 0.96993 * 120.00504 * 180.02562 * 18 17 15 40 40 H 1.07999 * 125.88997 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1933 -0.1372 -2.4175 6 6 2.6589 -1.1077 -3.2464 7 7 2.9726 -0.9542 -4.6070 8 6 3.4275 -2.0059 -5.3165 9 8 3.5668 -3.0858 -4.7796 10 6 3.7615 -1.8426 -6.7628 11 8 3.5243 -0.7940 -7.3257 12 7 4.3263 -2.8599 -7.4430 13 6 4.5400 -4.1515 -6.7855 14 6 4.7267 -2.6739 -8.8399 15 6 6.1498 -2.1809 -8.8932 16 1 6.7008 -2.0215 -7.9781 17 6 6.7481 -1.9322 -10.1102 18 7 6.0770 -2.1257 -11.2247 19 14 8.5118 -1.3203 -10.1763 20 1 9.0407 -1.1845 -8.7954 21 1 9.3442 -2.2902 -10.9325 22 1 8.5525 0.0006 -10.8536 23 6 2.7693 -2.2914 -2.5004 24 7 2.3907 -2.0385 -1.2740 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.9978 0.8904 -2.6857 33 1 2.8617 -0.0913 -5.0360 34 1 3.6250 -4.7416 -6.8381 35 1 5.3464 -4.6858 -7.2876 36 1 4.8073 -3.9879 -5.7415 37 1 4.6513 -3.6239 -9.3690 38 1 4.0707 -1.9422 -9.3116 39 1 6.4980 -1.9511 -12.0809 40 1 3.1116 -3.2453 -2.8735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557559206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:31 Heat of formation + Delta-G solvation = 2.354915 kcal Electronic energy + Delta-G solvation = -23228.990573 eV Core-core repulsion = 19659.658996 eV Total energy + Delta-G solvation = -3569.331577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.59273 -41.51567 -39.46351 -37.28233 -36.64459 -35.44563 -34.61893 -31.26646 -30.33316 -29.83016 -28.18362 -27.67501 -26.28784 -24.30206 -23.82573 -21.97433 -21.50009 -20.32395 -18.83881 -18.72865 -18.35995 -17.61677 -17.06192 -16.81388 -16.39487 -16.28879 -15.96650 -15.65051 -15.25131 -14.93238 -14.80923 -14.23490 -14.02250 -13.85133 -13.80662 -13.51952 -13.24947 -13.13501 -13.04577 -12.91321 -12.61382 -12.42920 -12.24081 -12.19879 -12.14370 -11.86578 -11.76787 -11.66359 -10.65339 -10.42894 -10.30111 -9.58755 -8.81237 -8.24187 -6.39107 0.24719 0.88909 1.20080 1.39621 1.40811 1.53197 1.63114 1.72394 2.31505 2.39922 2.68373 3.06463 3.36402 3.55322 3.83569 3.94810 4.06973 4.13781 4.44205 4.47324 4.49701 4.67693 4.70072 4.75187 4.84387 4.85312 4.91191 4.94475 5.15188 5.19263 5.22025 5.26312 5.45199 5.68030 5.72611 5.99579 6.01410 6.07371 6.42310 6.61893 6.67465 6.82218 7.03049 7.31779 8.83716 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.003009 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.371678 B = 9303.607072 C = 9645.937424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 C -0.161 4.161 4 N -0.356 5.356 5 C 0.050 3.950 6 C -0.032 4.032 7 N -0.601 5.601 8 C 0.516 3.484 9 O -0.515 6.515 10 C 0.493 3.507 11 O -0.559 6.559 12 N -0.572 5.572 13 C 0.072 3.928 14 C 0.254 3.746 15 C -0.547 4.547 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.970 3.030 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.278 1.278 23 C 0.038 3.962 24 N -0.314 5.314 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.215 0.785 33 H 0.428 0.572 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.033 0.967 38 H 0.014 0.986 39 H 0.269 0.731 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 6.283 23.237 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 C -0.219 4.219 4 N -0.140 5.140 5 C -0.099 4.099 6 C -0.136 4.136 7 N -0.248 5.248 8 C 0.299 3.701 9 O -0.392 6.392 10 C 0.275 3.725 11 O -0.439 6.439 12 N -0.302 5.302 13 C -0.070 4.070 14 C 0.134 3.866 15 C -0.585 4.585 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.204 1.204 23 C -0.148 4.148 24 N -0.136 5.136 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.078 0.922 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.230 5.615 24.380 27.029 hybrid contribution 0.934 0.693 -1.756 2.106 sum -9.296 6.308 22.624 25.259 Atomic orbital electron populations 1.22229 0.92460 1.02599 1.04530 1.21670 0.95639 0.93748 0.84065 1.22225 1.01893 0.92340 1.05405 1.48902 1.49493 1.06663 1.08959 1.22264 1.02518 1.00089 0.85051 1.17927 1.14801 0.95853 0.85065 1.42273 1.61619 1.13576 1.07297 1.19927 0.78673 0.84510 0.87038 1.90515 1.51485 1.25956 1.71212 1.20101 0.80311 0.84488 0.87621 1.90695 1.54830 1.27954 1.70435 1.48087 1.55623 1.12626 1.13881 1.22362 1.01911 0.82994 0.99745 1.19061 0.94659 0.96762 0.76154 1.21662 0.98292 1.45691 0.92890 0.92743 1.25827 1.02882 0.95188 0.94878 1.70043 1.38953 1.49222 0.98213 0.85335 0.78785 0.78127 0.78369 1.19243 1.19569 1.20366 1.24426 1.00492 1.00008 0.89857 1.77332 1.21327 0.95083 1.19888 0.91566 0.87817 0.93452 0.87876 0.87566 0.92258 0.90428 0.76850 0.73301 0.91476 0.91244 0.87910 0.94929 0.96770 0.92194 0.78896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.52 71.98 0.69 -0.73 16 2 C 0.15 1.68 3.93 44.99 0.18 1.86 16 3 C -0.16 -0.97 8.83 71.98 0.64 -0.34 16 4 N -0.36 -6.93 3.53 -326.84 -1.15 -8.09 16 5 C 0.05 0.94 10.63 83.62 0.89 1.83 16 6 C -0.03 -0.84 6.90 37.71 0.26 -0.58 16 7 N -0.60 -16.94 5.45 -305.41 -1.67 -18.61 16 8 C 0.52 17.96 7.74 87.23 0.68 18.64 16 9 O -0.52 -17.92 10.29 -3.40 -0.04 -17.96 16 10 C 0.49 21.13 7.73 87.23 0.67 21.80 16 11 O -0.56 -26.90 16.05 -3.28 -0.05 -26.95 16 12 N -0.57 -25.68 2.86 -852.87 -2.44 -28.11 16 13 C 0.07 2.59 9.55 127.77 1.22 3.81 16 14 C 0.25 13.67 5.16 85.63 0.44 14.11 16 15 C -0.55 -31.26 9.39 25.60 0.24 -31.02 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 19 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.04 1.09 10.84 85.36 0.93 2.02 16 24 N -0.31 -8.43 12.56 -56.72 -0.71 -9.14 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.08 0.34 7.16 -2.39 -0.02 0.33 16 32 H 0.21 2.15 7.27 -2.92 -0.02 2.13 16 33 H 0.43 10.64 8.31 -92.71 -0.77 9.87 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.49 8.03 -2.39 -0.02 2.47 16 36 H 0.10 3.57 5.35 -2.51 -0.01 3.56 16 37 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 38 H 0.01 0.85 7.37 -2.39 -0.02 0.84 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.19 5.92 5.92 -2.91 -0.02 5.90 16 Total: -1.00 -72.98 341.15 3.84 -69.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.30 Total: 15.49 kcal Atomic # 6 Polarization: 25.25 SS G_CDS: 7.29 Total: 32.54 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -5.68 Total: -118.55 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.09 Total: -44.91 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.98 3.84 -69.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557559206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.494 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds