Wall clock time and date at job start Tue Mar 31 2020 03:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 110.55380 * 2 1 4 4 C 1.54997 * 110.62084 * 123.05040 * 2 1 3 5 5 C 1.54808 * 102.09318 * 155.52601 * 4 2 1 6 6 H 1.09004 * 110.60138 * 97.85428 * 5 4 2 7 7 N 1.46504 * 110.48646 * 220.44604 * 5 4 2 8 8 C 1.34776 * 119.99938 * 201.22292 * 7 5 4 9 9 O 1.21845 * 120.00049 * 359.97438 * 8 7 5 10 10 N 1.33831 * 120.00113 * 179.97438 * 8 7 5 11 11 C 1.32938 * 120.00329 * 179.97438 * 10 8 7 12 12 C 1.41211 * 126.37432 * 359.95792 * 11 10 8 13 13 C 1.34958 * 108.24206 * 179.78726 * 12 11 10 14 14 N 1.36453 * 108.94469 * 0.40159 * 13 12 11 15 15 C 1.46500 * 125.85098 * 179.85890 * 14 13 12 16 16 C 1.50696 * 109.47323 * 274.69432 * 15 14 13 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 N 1.37420 * 126.38007 * 179.97438 * 11 10 8 25 25 H 0.96996 * 126.36484 * 359.94212 * 24 11 10 26 26 C 1.54101 * 104.18874 * 339.11719 * 5 4 2 27 27 O 1.43744 * 107.29366 * 357.97683 * 26 5 4 28 28 H 1.09006 * 109.47272 * 181.42345 * 1 2 3 29 29 H 1.08998 * 109.47315 * 301.42382 * 1 2 3 30 30 H 1.09002 * 109.47347 * 61.42506 * 1 2 3 31 31 H 1.09003 * 110.90740 * 37.32467 * 4 2 1 32 32 H 1.08999 * 110.90544 * 273.72692 * 4 2 1 33 33 H 0.96999 * 120.00366 * 21.21253 * 7 5 4 34 34 H 1.07997 * 125.88238 * 0.05862 * 12 11 10 35 35 H 1.07994 * 125.52578 * 180.23729 * 13 12 11 36 36 H 1.09004 * 109.47134 * 154.68744 * 15 14 13 37 37 H 1.09010 * 109.47025 * 34.69179 * 15 14 13 38 38 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 39 39 H 1.09003 * 109.87614 * 117.39467 * 26 5 4 40 40 H 1.08991 * 109.88023 * 238.39432 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7912 1.2159 5 6 3.4794 -1.2177 0.7217 6 1 4.2423 -0.5364 1.0987 7 7 3.7724 -2.5926 1.1343 8 6 5.0492 -3.0195 1.1977 9 8 5.9598 -2.2622 0.9114 10 7 5.3169 -4.2753 1.5751 11 6 6.5762 -4.6967 1.6371 12 6 7.7288 -3.9385 1.3358 13 6 8.8113 -4.7217 1.5260 14 7 8.3982 -5.9580 1.9297 15 6 9.2687 -7.0955 2.2370 16 6 9.5914 -7.8389 0.9665 17 1 9.1880 -7.4984 0.0243 18 6 10.4007 -8.9544 1.0070 19 7 10.8916 -9.3694 2.1544 20 14 10.8000 -9.8763 -0.5678 21 1 9.7797 -10.9308 -0.7963 22 1 10.7966 -8.9283 -1.7109 23 1 12.1411 -10.5028 -0.4482 24 7 6.9987 -5.9512 2.0061 25 1 6.4335 -6.6938 2.2705 26 6 3.3839 -1.1242 -0.8135 27 8 2.0384 -0.7335 -1.1349 28 1 -0.3634 -1.0274 0.0255 29 1 -0.3634 0.5358 0.8769 30 1 -0.3634 0.4915 -0.9025 31 1 1.4549 -1.6627 1.4234 32 1 2.1508 -0.1507 2.0947 33 1 3.0476 -3.1956 1.3620 34 1 7.7421 -2.9079 1.0134 35 1 9.8378 -4.4198 1.3796 36 1 8.7603 -7.7651 2.9308 37 1 10.1917 -6.7345 2.6911 38 1 10.6845 -8.8904 2.9721 39 1 4.0853 -0.3764 -1.1836 40 1 3.6071 -2.0938 -1.2585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566189167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:51 Heat of formation + Delta-G solvation = 23.072713 kcal Electronic energy + Delta-G solvation = -22827.704235 eV Core-core repulsion = 19259.271049 eV Total energy + Delta-G solvation = -3568.433186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89017 -39.96211 -38.47888 -34.85111 -34.12222 -33.04293 -32.27827 -31.13823 -30.76911 -29.49211 -26.33365 -26.09383 -23.49053 -22.46016 -21.49674 -21.40102 -20.84933 -19.76902 -17.97277 -17.10295 -16.88870 -16.30032 -15.91464 -15.60019 -15.10799 -14.94571 -14.57203 -14.14635 -13.96362 -13.83133 -13.50906 -13.24870 -12.90439 -12.76288 -12.66171 -12.52684 -12.17807 -11.90201 -11.64029 -11.44502 -11.33453 -11.04076 -10.96542 -10.38358 -10.31675 -9.83045 -9.81169 -9.26338 -9.05513 -8.87247 -8.68053 -8.44792 -7.04463 -6.76619 -4.69711 1.68562 1.96330 3.05989 3.20907 3.23735 3.39986 3.45522 3.73999 4.16087 4.32191 4.33390 4.54515 4.64949 4.83109 4.85851 5.00550 5.10573 5.15706 5.17013 5.40224 5.43349 5.59234 5.62067 5.74155 5.77885 5.87896 5.88799 5.94240 6.12416 6.19198 6.33574 6.62277 6.78425 6.98285 7.26408 7.27766 7.51170 7.68148 7.97711 8.21443 8.27283 8.35855 9.00856 9.52272 10.48055 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.002527 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.409455 B =11076.498017 C =11356.490506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.134 3.866 6 H 0.098 0.902 7 N -0.721 5.721 8 C 0.685 3.315 9 O -0.631 6.631 10 N -0.712 5.712 11 C 0.488 3.512 12 C -0.331 4.331 13 C 0.162 3.838 14 N -0.344 5.344 15 C 0.246 3.754 16 C -0.635 4.635 17 H 0.065 0.935 18 C 0.031 3.969 19 N -0.894 5.894 20 Si 1.078 2.922 21 H -0.284 1.284 22 H -0.284 1.284 23 H -0.279 1.279 24 N -0.471 5.471 25 H 0.444 0.556 26 C 0.036 3.964 27 O -0.377 6.377 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.269 0.731 39 H 0.064 0.936 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 13.483 0.091 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.195 4.195 5 C 0.027 3.973 6 H 0.116 0.884 7 N -0.376 5.376 8 C 0.384 3.616 9 O -0.513 6.513 10 N -0.476 5.476 11 C 0.234 3.766 12 C -0.364 4.364 13 C 0.018 3.982 14 N -0.130 5.130 15 C 0.129 3.871 16 C -0.673 4.673 17 H 0.083 0.917 18 C -0.176 4.176 19 N -0.528 5.528 20 Si 0.904 3.096 21 H -0.210 1.210 22 H -0.210 1.210 23 H -0.205 1.205 24 N -0.194 5.194 25 H 0.291 0.709 26 C -0.042 4.042 27 O -0.296 6.296 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.233 0.767 34 H 0.202 0.798 35 H 0.204 0.796 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.172 11.883 -0.608 17.022 hybrid contribution -0.777 1.012 0.862 1.540 sum -12.949 12.896 0.255 18.277 Atomic orbital electron populations 1.21766 0.93107 1.02984 1.02404 1.23077 0.95254 0.95364 0.84956 0.91076 1.23459 0.95750 1.01363 0.98909 1.22023 0.96810 0.84772 0.93686 0.88407 1.44748 1.07132 1.12180 1.73518 1.16635 0.82528 0.84667 0.77727 1.90733 1.44106 1.59772 1.56707 1.68046 1.16005 1.18654 1.44914 1.18697 0.90901 0.82468 0.84490 1.22409 0.89878 1.04196 1.19893 1.22802 1.00789 0.82749 0.91886 1.47636 0.92859 1.12878 1.59639 1.20051 0.87231 0.81309 0.98537 1.22309 1.36222 1.15235 0.93523 0.91668 1.25981 0.92618 0.95084 1.03910 1.70856 1.42128 1.40951 0.98872 0.83390 0.77182 0.75792 0.73250 1.20994 1.21006 1.20457 1.44405 0.96610 1.13076 1.65262 0.70869 1.23708 0.83646 1.01259 0.95593 1.88891 1.28267 1.73669 1.38756 0.91747 0.91145 0.91812 0.89727 0.89564 0.76742 0.79847 0.79628 0.94149 0.92505 0.92064 0.91769 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.66 37.15 0.36 -0.72 16 2 C 0.07 0.67 3.98 -25.68 -0.10 0.57 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.16 -1.45 6.30 -24.72 -0.16 -1.61 16 5 C 0.13 1.70 3.35 -66.40 -0.22 1.48 16 6 H 0.10 1.34 7.66 -51.93 -0.40 0.94 16 7 N -0.72 -10.82 5.05 -57.37 -0.29 -11.11 16 8 C 0.69 13.16 8.47 -87.76 -0.74 12.41 16 9 O -0.63 -13.35 12.97 5.06 0.07 -13.28 16 10 N -0.71 -13.96 10.59 -15.79 -0.17 -14.13 16 11 C 0.49 9.48 8.07 -155.28 -1.25 8.23 16 12 C -0.33 -6.19 9.52 -39.62 -0.38 -6.56 16 13 C 0.16 2.76 11.45 -16.66 -0.19 2.57 16 14 N -0.34 -6.43 3.63 -62.24 -0.23 -6.66 16 15 C 0.25 5.09 5.50 -5.20 -0.03 5.06 16 16 C -0.63 -15.32 9.39 -34.44 -0.32 -15.64 16 17 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 19 N -0.89 -23.46 13.65 55.43 0.76 -22.71 16 20 Si 1.08 22.55 29.90 -169.99 -5.08 17.46 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 N -0.47 -8.45 7.38 31.33 0.23 -8.22 16 25 H 0.44 7.05 8.96 -182.56 -1.64 5.41 16 26 C 0.04 0.48 7.50 37.73 0.28 0.76 16 27 O -0.38 -4.79 11.22 -35.23 -0.40 -5.19 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.75 7.65 -51.93 -0.40 0.35 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 5.34 8.45 -40.82 -0.34 5.00 16 34 H 0.18 3.60 5.77 -52.49 -0.30 3.29 16 35 H 0.19 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.04 0.85 8.01 -51.93 -0.42 0.43 16 37 H 0.06 1.16 8.01 -51.92 -0.42 0.74 16 38 H 0.27 6.83 7.22 -40.82 -0.29 6.53 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -30.26 338.75 -9.64 -39.89 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.78 Total: 11.61 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -2.85 Total: 7.22 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.30 Total: -62.82 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.33 Total: -18.47 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.08 Total: 17.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.26 -9.64 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566189167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.967 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds