Wall clock time and date at job start Tue Mar 31 2020 03:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 110.55380 * 2 1 4 4 C 1.54997 * 110.62084 * 123.05040 * 2 1 3 5 5 C 1.54808 * 102.09318 * 155.52601 * 4 2 1 6 6 H 1.09004 * 110.60138 * 97.85428 * 5 4 2 7 7 N 1.46504 * 110.48646 * 220.44604 * 5 4 2 8 8 C 1.34776 * 119.99938 * 201.22292 * 7 5 4 9 9 O 1.21845 * 120.00049 * 359.97438 * 8 7 5 10 10 N 1.33831 * 120.00113 * 179.97438 * 8 7 5 11 11 C 1.32938 * 120.00329 * 179.97438 * 10 8 7 12 12 C 1.41211 * 126.37432 * 359.95792 * 11 10 8 13 13 C 1.34958 * 108.24206 * 179.78726 * 12 11 10 14 14 N 1.36453 * 108.94469 * 0.40159 * 13 12 11 15 15 C 1.46500 * 125.85098 * 179.85890 * 14 13 12 16 16 C 1.50696 * 109.47323 * 274.69432 * 15 14 13 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 N 1.37420 * 126.38007 * 179.97438 * 11 10 8 25 25 H 0.96996 * 126.36484 * 359.94212 * 24 11 10 26 26 C 1.54101 * 104.18874 * 339.11719 * 5 4 2 27 27 O 1.43744 * 107.29366 * 357.97683 * 26 5 4 28 28 H 1.09006 * 109.47272 * 181.42345 * 1 2 3 29 29 H 1.08998 * 109.47315 * 301.42382 * 1 2 3 30 30 H 1.09002 * 109.47347 * 61.42506 * 1 2 3 31 31 H 1.09003 * 110.90740 * 37.32467 * 4 2 1 32 32 H 1.08999 * 110.90544 * 273.72692 * 4 2 1 33 33 H 0.96999 * 120.00366 * 21.21253 * 7 5 4 34 34 H 1.07997 * 125.88238 * 0.05862 * 12 11 10 35 35 H 1.07994 * 125.52578 * 180.23729 * 13 12 11 36 36 H 1.09004 * 109.47134 * 154.68744 * 15 14 13 37 37 H 1.09010 * 109.47025 * 34.69179 * 15 14 13 38 38 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 39 39 H 1.09003 * 109.87614 * 117.39467 * 26 5 4 40 40 H 1.08991 * 109.88023 * 238.39432 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7912 1.2159 5 6 3.4794 -1.2177 0.7217 6 1 4.2423 -0.5364 1.0987 7 7 3.7724 -2.5926 1.1343 8 6 5.0492 -3.0195 1.1977 9 8 5.9598 -2.2622 0.9114 10 7 5.3169 -4.2753 1.5751 11 6 6.5762 -4.6967 1.6371 12 6 7.7288 -3.9385 1.3358 13 6 8.8113 -4.7217 1.5260 14 7 8.3982 -5.9580 1.9297 15 6 9.2687 -7.0955 2.2370 16 6 9.5914 -7.8389 0.9665 17 1 9.1880 -7.4984 0.0243 18 6 10.4007 -8.9544 1.0070 19 7 10.8916 -9.3694 2.1544 20 14 10.8000 -9.8763 -0.5678 21 1 9.7797 -10.9308 -0.7963 22 1 10.7966 -8.9283 -1.7109 23 1 12.1411 -10.5028 -0.4482 24 7 6.9987 -5.9512 2.0061 25 1 6.4335 -6.6938 2.2705 26 6 3.3839 -1.1242 -0.8135 27 8 2.0384 -0.7335 -1.1349 28 1 -0.3634 -1.0274 0.0255 29 1 -0.3634 0.5358 0.8769 30 1 -0.3634 0.4915 -0.9025 31 1 1.4549 -1.6627 1.4234 32 1 2.1508 -0.1507 2.0947 33 1 3.0476 -3.1956 1.3620 34 1 7.7421 -2.9079 1.0134 35 1 9.8378 -4.4198 1.3796 36 1 8.7603 -7.7651 2.9308 37 1 10.1917 -6.7345 2.6911 38 1 10.6845 -8.8904 2.9721 39 1 4.0853 -0.3764 -1.1836 40 1 3.6071 -2.0938 -1.2585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566189167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:51 Heat of formation + Delta-G solvation = 1.964943 kcal Electronic energy + Delta-G solvation = -22828.619537 eV Core-core repulsion = 19259.271049 eV Total energy + Delta-G solvation = -3569.348487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35551 -41.03980 -39.77141 -36.40139 -35.53281 -34.64857 -33.06133 -32.58514 -32.28375 -30.64155 -27.95748 -26.97581 -25.18562 -23.83657 -22.81396 -22.32617 -22.05230 -21.11405 -19.63698 -18.63293 -17.90637 -17.67580 -17.16936 -16.62117 -16.57120 -16.16278 -16.02556 -15.73528 -15.49426 -14.92977 -14.78843 -14.45328 -14.29836 -14.26546 -13.83400 -13.41980 -13.35095 -13.23320 -12.75373 -12.61426 -12.54421 -12.20132 -11.98679 -11.91136 -11.80408 -11.30191 -10.94009 -10.76897 -10.73729 -10.57540 -9.99322 -9.92687 -8.89176 -8.36385 -6.63866 0.22691 0.50065 1.54061 1.57377 1.60763 1.77670 2.21333 2.45258 2.82945 2.91838 2.99948 3.06809 3.52375 3.79798 3.83094 4.00973 4.06639 4.18091 4.25201 4.33166 4.44845 4.49755 4.57009 4.66858 4.70276 4.83344 4.84046 4.91909 4.98001 5.11630 5.19145 5.30996 5.45907 5.68214 5.86482 5.90353 5.96062 6.04426 6.30868 6.41063 6.82621 6.93790 7.11938 8.06349 8.56016 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.002527 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.409455 B =11076.498017 C =11356.490506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.084 0.916 4 C -0.144 4.144 5 C 0.130 3.870 6 H 0.088 0.912 7 N -0.709 5.709 8 C 0.673 3.327 9 O -0.656 6.656 10 N -0.721 5.721 11 C 0.473 3.527 12 C -0.342 4.342 13 C 0.176 3.824 14 N -0.350 5.350 15 C 0.255 3.745 16 C -0.639 4.639 17 H 0.051 0.949 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 1.115 2.885 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.279 1.279 24 N -0.467 5.467 25 H 0.451 0.549 26 C 0.041 3.959 27 O -0.394 6.394 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.406 0.594 34 H 0.176 0.824 35 H 0.222 0.778 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.266 0.734 39 H 0.064 0.936 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 14.177 0.195 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.102 0.898 4 C -0.182 4.182 5 C 0.024 3.976 6 H 0.106 0.894 7 N -0.363 5.363 8 C 0.372 3.628 9 O -0.541 6.541 10 N -0.486 5.486 11 C 0.219 3.781 12 C -0.375 4.375 13 C 0.032 3.968 14 N -0.136 5.136 15 C 0.137 3.863 16 C -0.677 4.677 17 H 0.069 0.931 18 C -0.211 4.211 19 N -0.555 5.555 20 Si 0.937 3.063 21 H -0.203 1.203 22 H -0.201 1.201 23 H -0.204 1.204 24 N -0.190 5.190 25 H 0.300 0.700 26 C -0.037 4.037 27 O -0.313 6.313 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.242 0.758 34 H 0.193 0.807 35 H 0.239 0.761 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.043 12.596 -0.494 18.138 hybrid contribution -0.591 0.870 0.828 1.339 sum -13.634 13.466 0.334 19.166 Atomic orbital electron populations 1.21788 0.91390 1.03143 1.03607 1.23369 0.96598 0.95558 0.83698 0.89818 1.23452 0.93205 1.01963 0.99616 1.22172 0.98682 0.83249 0.93545 0.89419 1.44723 1.05974 1.13238 1.72404 1.16941 0.83584 0.84465 0.77796 1.90709 1.45190 1.60254 1.57935 1.68102 1.16236 1.18961 1.45256 1.18921 0.91281 0.83040 0.84815 1.22326 0.90324 1.04047 1.20780 1.23329 1.02020 0.81530 0.89897 1.47521 0.93065 1.12938 1.60081 1.19798 0.87807 0.81604 0.97049 1.22502 1.35590 1.15376 0.94214 0.93060 1.27023 0.92576 0.96023 1.05434 1.70935 1.43543 1.41734 0.99293 0.82900 0.77093 0.75298 0.71021 1.20283 1.20058 1.20430 1.44384 0.96456 1.13020 1.65188 0.70004 1.23533 0.84284 1.00156 0.95751 1.88879 1.27768 1.74254 1.40447 0.92181 0.88708 0.91802 0.89005 0.87333 0.75790 0.80736 0.76143 0.94298 0.91545 0.92447 0.91768 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.66 71.98 0.70 -1.06 16 2 C 0.06 1.08 3.98 31.27 0.12 1.21 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.14 -2.37 6.30 31.89 0.20 -2.17 16 5 C 0.13 3.21 3.35 45.98 0.15 3.36 16 6 H 0.09 2.37 7.66 -2.39 -0.02 2.35 16 7 N -0.71 -21.02 5.05 -453.59 -2.29 -23.31 16 8 C 0.67 25.94 8.47 179.35 1.52 27.46 16 9 O -0.66 -28.11 12.97 -4.81 -0.06 -28.17 16 10 N -0.72 -28.24 10.59 -322.54 -3.42 -31.66 16 11 C 0.47 18.27 8.07 133.95 1.08 19.35 16 12 C -0.34 -12.64 9.52 22.25 0.21 -12.43 16 13 C 0.18 5.73 11.45 83.22 0.95 6.69 16 14 N -0.35 -12.67 3.63 -350.83 -1.28 -13.95 16 15 C 0.26 10.28 5.50 85.63 0.47 10.75 16 16 C -0.64 -30.20 9.39 25.60 0.24 -29.96 16 17 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 18 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 19 N -0.92 -47.71 13.65 21.45 0.29 -47.41 16 20 Si 1.11 44.52 29.90 68.60 2.05 46.57 16 21 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 24 N -0.47 -16.47 7.38 -54.78 -0.40 -16.88 16 25 H 0.45 14.11 8.96 -213.29 -1.91 12.20 16 26 C 0.04 1.09 7.50 72.35 0.54 1.63 16 27 O -0.39 -9.71 11.22 -148.98 -1.67 -11.38 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.40 7.65 -2.39 -0.02 1.38 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 33 H 0.41 10.59 8.45 -92.71 -0.78 9.81 16 34 H 0.18 6.87 5.77 -2.91 -0.02 6.86 16 35 H 0.22 5.40 8.06 -2.91 -0.02 5.38 16 36 H 0.04 1.60 8.01 -2.38 -0.02 1.58 16 37 H 0.07 2.60 8.01 -2.38 -0.02 2.58 16 38 H 0.27 13.38 7.22 -92.71 -0.67 12.71 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.03 7.93 -2.39 -0.02 2.01 16 Total: -1.00 -64.05 338.75 -1.64 -65.69 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -1.52 Total: 35.62 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 6.66 Total: 24.88 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -7.09 Total: -133.21 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.73 Total: -39.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.05 Total: 46.57 kcal Total: -64.05 -1.64 -65.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566189167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.652 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds