Wall clock time and date at job start Tue Mar 31 2020 04:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 N 1.46501 * 109.47010 * 119.99578 * 2 1 3 5 5 C 1.35227 * 125.99496 * 275.00202 * 4 2 1 6 6 C 1.35847 * 107.64276 * 180.02562 * 5 4 2 7 7 N 1.40492 * 126.11146 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99641 * 179.97438 * 7 6 5 9 9 O 1.21401 * 120.00127 * 359.97438 * 8 7 6 10 10 C 1.49328 * 119.99930 * 180.02562 * 8 7 6 11 11 O 1.21365 * 119.99587 * 359.97438 * 10 8 7 12 12 N 1.34779 * 119.99930 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 8 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.40331 * 107.77216 * 0.22599 * 6 5 4 25 25 N 1.30824 * 108.20982 * 359.61678 * 24 6 5 26 26 H 1.09001 * 109.47473 * 60.00663 * 1 2 3 27 27 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47565 * 300.00435 * 1 2 3 29 29 H 1.08995 * 109.47565 * 239.99565 * 2 1 3 30 30 H 1.09000 * 109.47171 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46577 * 299.99441 * 3 2 1 32 32 H 1.08995 * 109.47298 * 59.99402 * 3 2 1 33 33 H 1.08002 * 126.17979 * 0.03826 * 5 4 2 34 34 H 0.96993 * 119.99960 * 359.97438 * 7 6 5 35 35 H 0.96997 * 119.99849 * 359.97438 * 12 10 8 36 36 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 37 37 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 38 38 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.08003 * 125.89952 * 179.74109 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1932 -0.1371 2.4176 6 6 2.6587 -1.1075 3.2465 7 7 2.9733 -0.9536 4.6071 8 6 3.4280 -2.0053 5.3167 9 8 3.5654 -3.0857 4.7803 10 6 3.7619 -1.8419 6.7630 11 8 3.6241 -0.7619 7.2992 12 7 4.2172 -2.8935 7.4725 13 6 4.5442 -2.7333 8.8915 14 1 3.8519 -2.0246 9.3461 15 6 5.9747 -2.2084 9.0290 16 6 4.4287 -4.0651 9.5870 17 1 4.1401 -4.9431 9.0281 18 6 4.6904 -4.1627 10.9373 19 7 5.0413 -3.0936 11.6180 20 14 4.5465 -5.8135 11.7995 21 1 3.1622 -5.9874 12.3081 22 1 4.8619 -6.9023 10.8402 23 1 5.5013 -5.8632 12.9359 24 6 2.7746 -2.2897 2.4994 25 7 2.3863 -2.0395 1.2754 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 1.9979 0.8907 2.6857 34 1 2.8632 -0.0905 5.0356 35 1 4.3276 -3.7565 7.0437 36 1 6.6671 -2.9170 8.5744 37 1 6.0582 -1.2451 8.5259 38 1 6.2179 -2.0888 10.0848 39 1 5.2251 -3.1622 12.5680 40 1 3.1222 -3.2423 2.8711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573905830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:00 Heat of formation + Delta-G solvation = -15.339074 kcal Electronic energy + Delta-G solvation = -22930.791619 eV Core-core repulsion = 19360.692773 eV Total energy + Delta-G solvation = -3570.098846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -42.58523 -41.41768 -39.55913 -37.11294 -36.75582 -35.55555 -34.29434 -31.27924 -31.10626 -30.05239 -28.17765 -27.36410 -26.16389 -23.96948 -23.21721 -21.84162 -21.48762 -20.88972 -19.64040 -18.66788 -18.00589 -17.53156 -17.00715 -16.89222 -16.46182 -16.22658 -15.83431 -15.64134 -15.11093 -15.00407 -14.81495 -14.41162 -14.00201 -13.86131 -13.72145 -13.18236 -13.07032 -13.04543 -12.89899 -12.80091 -12.51888 -12.42987 -12.27336 -12.21013 -12.11094 -11.88079 -11.77748 -11.14827 -10.66032 -10.55662 -10.44316 -9.95459 -8.83790 -8.19226 -6.36103 0.22818 0.87605 1.20247 1.46394 1.46912 1.57389 1.65020 1.69851 2.33580 2.40856 2.84430 3.11709 3.52812 3.56343 3.82959 3.94573 4.05970 4.13594 4.43309 4.48309 4.68085 4.71993 4.74503 4.84607 4.90755 4.94295 4.95543 5.03739 5.20998 5.26276 5.33205 5.46350 5.61081 5.66259 5.78911 6.02076 6.05231 6.09877 6.53329 6.66049 6.68663 6.87715 7.10852 7.36218 8.86953 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.040197 B = 0.002677 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.394641 B =10457.827751 C =10806.983916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.160 4.160 4 N -0.355 5.355 5 C 0.053 3.947 6 C -0.034 4.034 7 N -0.599 5.599 8 C 0.514 3.486 9 O -0.528 6.528 10 C 0.499 3.501 11 O -0.558 6.558 12 N -0.671 5.671 13 C 0.268 3.732 14 H 0.016 0.984 15 C -0.136 4.136 16 C -0.552 4.552 17 H 0.070 0.930 18 C 0.020 3.980 19 N -0.912 5.912 20 Si 0.971 3.029 21 H -0.277 1.277 22 H -0.264 1.264 23 H -0.281 1.281 24 C 0.035 3.965 25 N -0.314 5.314 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.218 0.782 34 H 0.431 0.569 35 H 0.410 0.590 36 H 0.039 0.961 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.268 0.732 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 9.838 -22.705 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 C -0.218 4.218 4 N -0.140 5.140 5 C -0.096 4.096 6 C -0.138 4.138 7 N -0.246 5.246 8 C 0.295 3.705 9 O -0.405 6.405 10 C 0.279 3.721 11 O -0.438 6.438 12 N -0.321 5.321 13 C 0.166 3.834 14 H 0.034 0.966 15 C -0.195 4.195 16 C -0.590 4.590 17 H 0.088 0.912 18 C -0.181 4.181 19 N -0.550 5.550 20 Si 0.796 3.204 21 H -0.202 1.202 22 H -0.189 1.189 23 H -0.206 1.206 24 C -0.150 4.150 25 N -0.137 5.137 26 H 0.122 0.878 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.234 0.766 34 H 0.270 0.730 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.522 9.465 -23.760 26.659 hybrid contribution 0.220 -0.556 1.731 1.832 sum -7.302 8.908 -22.028 24.858 Atomic orbital electron populations 1.22234 0.92515 1.02550 1.04575 1.21684 0.95614 0.93840 0.84022 1.22222 1.01936 0.92178 1.05461 1.48927 1.49498 1.06494 1.09053 1.22291 1.02341 1.00122 0.84895 1.17926 1.14876 0.95821 0.85188 1.42231 1.61580 1.13559 1.07201 1.20050 0.78705 0.84445 0.87254 1.90620 1.52271 1.26566 1.71024 1.20072 0.79501 0.85197 0.87299 1.90702 1.54610 1.26573 1.71919 1.46248 1.61248 1.12226 1.12342 1.18610 0.93117 0.96599 0.75071 0.96637 1.21928 0.97728 0.97185 1.02678 1.21500 1.48501 0.94328 0.94695 0.91211 1.25720 0.93993 1.00599 0.97783 1.70018 1.45959 1.30192 1.08865 0.85356 0.77910 0.79158 0.78001 1.20237 1.18864 1.20643 1.24391 1.00539 1.00066 0.90052 1.77340 1.21281 0.95127 1.19949 0.87779 0.93580 0.91509 0.87925 0.92165 0.87562 0.90326 0.76552 0.73039 0.75419 0.94194 0.95985 0.90809 0.92320 0.79305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.52 71.98 0.68 -0.73 16 2 C 0.15 1.64 3.93 44.99 0.18 1.81 16 3 C -0.16 -0.86 8.83 71.98 0.64 -0.22 16 4 N -0.36 -6.86 3.53 -326.84 -1.15 -8.01 16 5 C 0.05 0.96 10.63 83.61 0.89 1.85 16 6 C -0.03 -0.87 6.90 37.71 0.26 -0.61 16 7 N -0.60 -16.22 5.46 -305.42 -1.67 -17.89 16 8 C 0.51 17.53 7.86 87.23 0.69 18.21 16 9 O -0.53 -19.30 13.63 -3.41 -0.05 -19.34 16 10 C 0.50 20.11 7.85 87.23 0.68 20.80 16 11 O -0.56 -24.64 16.14 -3.29 -0.05 -24.69 16 12 N -0.67 -29.15 5.06 -447.56 -2.27 -31.42 16 13 C 0.27 13.76 2.56 44.24 0.11 13.87 16 14 H 0.02 0.92 7.58 -2.38 -0.02 0.90 16 15 C -0.14 -6.75 9.26 71.98 0.67 -6.08 16 16 C -0.55 -29.36 8.73 25.60 0.22 -29.14 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 18 C 0.02 1.05 5.30 84.66 0.45 1.50 16 19 N -0.91 -51.12 11.32 21.45 0.24 -50.88 16 20 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.04 1.04 10.84 85.35 0.93 1.96 16 25 N -0.31 -8.57 12.56 -56.72 -0.71 -9.28 16 26 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.08 0.28 7.16 -2.39 -0.02 0.26 16 33 H 0.22 1.94 7.27 -2.91 -0.02 1.92 16 34 H 0.43 9.83 8.29 -92.71 -0.77 9.06 16 35 H 0.41 16.54 8.01 -92.71 -0.74 15.80 16 36 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.19 6.10 5.92 -2.91 -0.02 6.08 16 Total: -1.00 -68.32 342.24 2.34 -65.98 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.43 Total: 28.21 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 6.39 Total: 23.23 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -5.56 Total: -117.48 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.10 Total: -44.03 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.32 2.34 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573905830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.643 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds