Wall clock time and date at job start Tue Mar 31 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 C 1.50695 * 109.47323 * 120.00824 * 2 1 3 5 5 N 1.30505 * 125.64712 * 300.03539 * 4 2 1 6 6 C 1.34128 * 109.25616 * 179.97438 * 5 4 2 7 7 C 1.34668 * 108.01756 * 359.73613 * 6 5 4 8 8 N 1.35043 * 125.65197 * 119.99738 * 4 2 1 9 9 C 1.46491 * 126.40037 * 0.03352 * 8 4 2 10 10 C 1.50702 * 109.46957 * 84.99948 * 9 8 4 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 O 1.21297 * 119.99707 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00262 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99935 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00186 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99926 * 179.97438 * 17 16 14 20 20 N 1.31403 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46942 * 89.99866 * 21 19 17 23 23 H 1.48493 * 109.47274 * 210.00382 * 21 19 17 24 24 H 1.48504 * 109.47027 * 330.00265 * 21 19 17 25 25 H 1.08996 * 109.46982 * 299.99798 * 1 2 3 26 26 H 1.09004 * 109.47065 * 59.99585 * 1 2 3 27 27 H 1.08994 * 109.47308 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46648 * 240.00608 * 2 1 3 29 29 H 1.08995 * 109.47419 * 300.00000 * 3 2 1 30 30 H 1.08996 * 109.46777 * 60.00717 * 3 2 1 31 31 H 1.09000 * 109.46926 * 180.02562 * 3 2 1 32 32 H 1.07998 * 125.98360 * 180.02562 * 6 5 4 33 33 H 1.08005 * 126.58899 * 180.28116 * 7 6 5 34 34 H 1.09004 * 109.47166 * 325.00214 * 9 8 4 35 35 H 1.08994 * 109.47507 * 204.99920 * 9 8 4 36 36 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 37 37 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 38 38 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 39 39 H 0.96996 * 120.00282 * 0.02562 * 16 14 13 40 40 H 0.97003 * 120.00258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7106 1.2303 5 7 1.7855 -0.3626 2.4637 6 6 2.3926 -1.2219 3.2956 7 6 3.0354 -2.1403 2.5495 8 7 2.8120 -1.8132 1.2393 9 6 3.3190 -2.5289 0.0660 10 6 4.5913 -1.8761 -0.4096 11 8 5.0315 -0.9086 0.1743 12 7 5.2433 -2.3712 -1.4803 13 6 6.4834 -1.7403 -1.9390 14 6 7.0076 -2.4795 -3.1430 15 8 6.4043 -3.4388 -3.5758 16 7 8.1466 -2.0748 -3.7391 17 6 8.6232 -2.7470 -4.8348 18 1 8.0856 -3.6006 -5.2206 19 6 9.7973 -2.3294 -5.4496 20 7 10.4510 -1.2906 -4.9805 21 14 10.4462 -3.2449 -6.9430 22 1 9.8792 -2.6439 -8.1769 23 1 11.9274 -3.1455 -6.9794 24 1 10.0478 -4.6731 -6.8598 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.3662 -1.1862 4.3747 33 1 3.6174 -2.9736 2.9148 34 1 2.5744 -2.4960 -0.7295 35 1 3.5205 -3.5664 0.3323 36 1 4.8914 -3.1452 -1.9472 37 1 6.2853 -0.7028 -2.2079 38 1 7.2248 -1.7735 -1.1406 39 1 8.6292 -1.3080 -3.3928 40 1 11.2704 -0.9988 -5.4099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602154767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:27 Heat of formation + Delta-G solvation = -19.750825 kcal Electronic energy + Delta-G solvation = -23102.926891 eV Core-core repulsion = 19532.636738 eV Total energy + Delta-G solvation = -3570.290154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25722 -39.68439 -38.22893 -35.45227 -34.64825 -34.06661 -33.83730 -31.48648 -29.25334 -28.70579 -27.24059 -26.81545 -24.50962 -22.94546 -21.48394 -20.72957 -19.81287 -19.14624 -18.25338 -17.62234 -17.37782 -15.90988 -15.72316 -15.45917 -15.01816 -15.01017 -14.45085 -14.38179 -14.22406 -13.96833 -13.67054 -13.46040 -13.38918 -12.95547 -12.70880 -12.33204 -12.23090 -11.98426 -11.71131 -11.61009 -11.29199 -11.19257 -11.07179 -10.52714 -10.43563 -10.36029 -9.97929 -9.72413 -9.51553 -9.04937 -8.75416 -8.36698 -8.19671 -6.59847 -4.02398 1.90568 2.44940 2.50913 3.05387 3.13913 3.16666 3.19875 3.25952 3.62891 4.03411 4.24703 4.42445 4.52152 4.63354 4.72556 4.75099 4.93275 5.01782 5.08369 5.14424 5.41580 5.54810 5.58188 5.72309 5.74493 5.77708 5.80383 5.84795 5.93522 6.08334 6.21656 6.27639 6.41614 6.73214 7.05728 7.37895 7.50601 7.82029 8.08925 8.13006 8.34877 8.95530 9.29127 9.76191 10.56782 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.002760 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.383213 B =10143.456071 C =10367.538772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.139 4.139 4 C 0.229 3.771 5 N -0.488 5.488 6 C -0.029 4.029 7 C -0.052 4.052 8 N -0.440 5.440 9 C 0.084 3.916 10 C 0.492 3.508 11 O -0.526 6.526 12 N -0.701 5.701 13 C 0.110 3.890 14 C 0.425 3.575 15 O -0.599 6.599 16 N -0.546 5.546 17 C -0.307 4.307 18 H 0.106 0.894 19 C 0.027 3.973 20 N -0.893 5.893 21 Si 0.934 3.066 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.268 1.268 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 -0.162 9.985 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.034 4.034 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.184 4.184 8 N -0.122 5.122 9 C -0.043 4.043 10 C 0.275 3.725 11 O -0.402 6.402 12 N -0.356 5.356 13 C -0.017 4.017 14 C 0.211 3.789 15 O -0.486 6.486 16 N -0.180 5.180 17 C -0.437 4.437 18 H 0.124 0.876 19 C -0.176 4.176 20 N -0.533 5.533 21 Si 0.760 3.240 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.193 1.193 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.214 0.580 10.179 18.314 hybrid contribution 1.347 -1.145 -0.936 2.000 sum -13.867 -0.565 9.244 16.675 Atomic orbital electron populations 1.21785 0.93117 1.02002 1.02762 1.19546 0.96382 0.96223 0.90777 1.21756 1.01826 0.93784 1.02347 1.23150 0.96334 0.88261 0.95645 1.70166 1.24623 1.26873 0.98924 1.22201 1.01626 0.94343 0.99452 1.22630 1.08172 1.05029 0.82580 1.44842 1.38352 1.23177 1.05870 1.21659 0.95981 0.97653 0.89006 1.20590 0.85881 0.84970 0.81016 1.90783 1.67207 1.26426 1.55828 1.45619 1.25391 1.34209 1.30391 1.20981 0.86436 0.97333 0.96993 1.19669 0.84334 0.87859 0.87031 1.90498 1.60006 1.30618 1.67446 1.41797 1.20462 1.28925 1.26840 1.19735 1.06511 1.12521 1.04899 0.87605 1.25346 0.96258 0.96507 0.99515 1.69608 1.17729 1.24692 1.41222 0.85803 0.77809 0.79768 0.80607 1.20187 1.20730 1.19267 0.91328 0.91828 0.92862 0.90505 0.92002 0.91512 0.92087 0.81461 0.81087 0.86036 0.85751 0.74933 0.89688 0.89735 0.77007 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.10 3.25 -91.77 -0.30 -0.40 16 3 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 4 C 0.23 3.02 6.40 -155.41 -0.99 2.02 16 5 N -0.49 -7.05 11.25 -10.82 -0.12 -7.18 16 6 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 7 C -0.05 -0.60 11.58 -16.56 -0.19 -0.80 16 8 N -0.44 -5.33 2.24 -115.19 -0.26 -5.58 16 9 C 0.08 0.82 6.17 -5.20 -0.03 0.79 16 10 C 0.49 6.76 7.90 -10.98 -0.09 6.68 16 11 O -0.53 -9.33 16.42 5.55 0.09 -9.24 16 12 N -0.70 -10.12 5.53 -61.47 -0.34 -10.46 16 13 C 0.11 1.88 6.15 -5.20 -0.03 1.84 16 14 C 0.43 9.21 7.85 -10.99 -0.09 9.13 16 15 O -0.60 -14.44 15.24 5.54 0.08 -14.35 16 16 N -0.55 -13.03 5.29 -10.96 -0.06 -13.08 16 17 C -0.31 -8.09 9.68 -14.93 -0.14 -8.24 16 18 H 0.11 2.90 7.16 -52.49 -0.38 2.52 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.29 13.05 55.50 0.72 -22.56 16 21 Si 0.93 19.98 29.55 -169.99 -5.02 14.96 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.77 6.85 -51.92 -0.36 0.42 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.12 0.88 7.28 -51.93 -0.38 0.50 16 35 H 0.12 0.86 8.13 -51.93 -0.42 0.43 16 36 H 0.41 5.62 7.44 -40.82 -0.30 5.32 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.40 9.13 7.90 -40.82 -0.32 8.80 16 40 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -33.04 348.91 -6.66 -39.70 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.52 Total: 13.65 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.49 Total: 8.90 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.05 Total: -58.87 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.18 Total: -23.59 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.04 -6.66 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602154767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.949 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds