Wall clock time and date at job start Tue Mar 31 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31130 * 126.55171 * 2 1 4 4 C 1.34495 * 105.61907 * 180.12300 * 3 2 1 5 5 C 1.50699 * 126.29166 * 179.90610 * 4 3 2 6 6 H 1.08999 * 109.45452 * 14.73921 * 5 4 3 7 7 C 1.53037 * 109.46207 * 254.76779 * 5 4 3 8 8 C 1.53114 * 109.28090 * 180.80641 * 7 5 4 9 9 C 1.53119 * 109.16090 * 57.65127 * 8 7 5 10 10 C 1.53041 * 109.28033 * 302.34939 * 9 8 7 11 11 N 1.46842 * 109.46194 * 134.71736 * 5 4 3 12 12 C 1.46903 * 110.99844 * 305.85354 * 11 5 4 13 13 C 1.50699 * 109.47398 * 301.83780 * 12 11 5 14 14 O 1.21297 * 119.99867 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00325 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99974 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00583 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00110 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00230 * 179.72236 * 18 16 15 21 21 H 1.48497 * 109.47173 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46866 * 120.00218 * 20 18 16 23 23 H 1.48501 * 109.47438 * 240.00339 * 20 18 16 24 24 N 1.29949 * 107.41792 * 359.64571 * 4 3 2 25 25 O 1.21294 * 110.25478 * 0.22367 * 24 4 3 26 26 H 1.08995 * 109.47018 * 180.24759 * 1 2 3 27 27 H 1.09001 * 109.46941 * 300.25078 * 1 2 3 28 28 H 1.09005 * 109.47264 * 60.24413 * 1 2 3 29 29 H 1.08995 * 109.50412 * 60.86230 * 7 5 4 30 30 H 1.09004 * 109.53615 * 300.76636 * 7 5 4 31 31 H 1.09008 * 109.51894 * 297.75059 * 8 7 5 32 32 H 1.08995 * 109.52897 * 177.56446 * 8 7 5 33 33 H 1.09007 * 109.50414 * 182.40871 * 9 8 7 34 34 H 1.08996 * 109.53317 * 62.31351 * 9 8 7 35 35 H 1.09004 * 109.46107 * 299.16156 * 10 9 8 36 36 H 1.09000 * 109.45852 * 179.19329 * 10 9 8 37 37 H 1.09005 * 109.47310 * 181.83488 * 12 11 5 38 38 H 1.08999 * 109.47201 * 61.84381 * 12 11 5 39 39 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 40 40 H 0.97000 * 120.00377 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8112 1.3887 -0.0059 6 1 4.5789 2.4210 0.2558 7 6 5.4419 1.3456 -1.3996 8 6 6.7391 2.1590 -1.3928 9 6 7.6824 1.5917 -0.3285 10 6 6.9868 1.6277 1.0342 11 7 5.7522 0.8347 0.9759 12 6 5.1293 0.7322 2.3024 13 6 4.6599 2.0945 2.7437 14 8 4.8281 3.0564 2.0241 15 7 4.0541 2.2443 3.9382 16 6 3.6275 3.4837 4.3398 17 1 3.7766 4.3401 3.6989 18 6 3.0024 3.6381 5.5712 19 7 2.8206 2.5961 6.3510 20 14 2.4282 5.3282 6.1218 21 1 2.7543 6.3278 5.0731 22 1 0.9599 5.3044 6.3429 23 1 3.1134 5.6960 7.3869 24 7 3.4644 -0.7241 0.0034 25 8 2.3029 -1.0735 0.0051 26 1 -0.3633 -1.0276 0.0044 27 1 -0.3633 0.5177 0.8877 28 1 -0.3634 0.5101 -0.8922 29 1 4.7493 1.7711 -2.1258 30 1 5.6616 0.3124 -1.6685 31 1 6.5147 3.2006 -1.1628 32 1 7.2141 2.0955 -2.3718 33 1 8.5907 2.1932 -0.2893 34 1 7.9382 0.5624 -0.5795 35 1 6.7443 2.6589 1.2911 36 1 7.6505 1.2111 1.7919 37 1 5.8578 0.3496 3.0173 38 1 4.2781 0.0531 2.2526 39 1 3.9205 1.4752 4.5141 40 1 2.3846 2.7039 7.2107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:22 Heat of formation + Delta-G solvation = 36.641836 kcal Electronic energy + Delta-G solvation = -24828.230161 eV Core-core repulsion = 21260.385377 eV Total energy + Delta-G solvation = -3567.844784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -45.29043 -39.65795 -37.39107 -35.52252 -34.11545 -33.49928 -32.87204 -31.30675 -30.55814 -28.61722 -27.44031 -24.94207 -24.25952 -22.93800 -22.72317 -20.99266 -19.63256 -19.06985 -17.91025 -17.85397 -17.19822 -15.98029 -15.66188 -15.04634 -14.64716 -14.47080 -14.39381 -14.03313 -13.86996 -13.55420 -13.41250 -13.20050 -12.89182 -12.73064 -12.25706 -11.98863 -11.84128 -11.56194 -11.48079 -11.25587 -11.12367 -10.80937 -10.59432 -10.54189 -10.42122 -10.37517 -10.28599 -10.19983 -9.56182 -9.41964 -9.24811 -8.01900 -7.46044 -6.46889 -3.87957 1.43712 2.54618 3.07783 3.11459 3.23032 3.30384 3.76290 3.78924 4.13217 4.27336 4.45492 4.91770 5.07628 5.09829 5.16996 5.20479 5.22545 5.27785 5.33077 5.48430 5.67810 5.72460 5.84008 5.88787 5.94370 5.98974 6.04802 6.08263 6.13978 6.18847 6.27652 6.34277 6.36782 6.55254 6.70239 7.27471 7.36906 7.50138 7.99165 8.52222 8.53332 9.11043 9.46567 9.96684 10.69820 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.005934 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.686518 B = 4717.729879 C = 6137.247191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.469 5.469 4 C 0.190 3.810 5 C 0.152 3.848 6 H 0.123 0.877 7 C -0.103 4.103 8 C -0.116 4.116 9 C -0.113 4.113 10 C 0.044 3.956 11 N -0.503 5.503 12 C 0.040 3.960 13 C 0.409 3.591 14 O -0.591 6.591 15 N -0.554 5.554 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.024 3.976 19 N -0.898 5.898 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.370 5.370 25 O 0.068 5.932 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.392 0.608 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -6.433 -12.018 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 N -0.204 5.204 4 C -0.083 4.083 5 C 0.043 3.957 6 H 0.140 0.860 7 C -0.142 4.142 8 C -0.154 4.154 9 C -0.151 4.151 10 C -0.083 4.083 11 N -0.227 5.227 12 C -0.092 4.092 13 C 0.194 3.806 14 O -0.478 6.478 15 N -0.188 5.188 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.178 4.178 19 N -0.539 5.539 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 N -0.077 5.077 25 O 0.009 5.991 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.225 0.775 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.958 -6.371 -12.443 14.012 hybrid contribution -0.904 0.958 1.206 1.786 sum 0.054 -5.413 -11.236 12.472 Atomic orbital electron populations 1.20318 0.80631 1.05109 1.05567 1.28815 0.98886 0.81055 0.97056 1.71936 1.00404 1.28686 1.19327 1.25735 0.94931 0.87866 0.99800 1.20349 0.83956 0.98088 0.93322 0.85988 1.21566 0.96977 1.01033 0.94635 1.21528 0.95231 0.99841 0.98789 1.21571 0.97674 1.01179 0.94699 1.22249 0.90133 0.98880 0.97084 1.62372 1.04815 1.50613 1.04875 1.22055 1.00004 0.95924 0.91254 1.20953 0.84865 0.90921 0.83825 1.90363 1.61939 1.41380 1.54129 1.42023 1.50295 1.10670 1.15860 1.19770 1.34396 0.86997 1.01726 0.87836 1.25295 0.97299 0.99269 0.95978 1.69624 1.43090 1.29817 1.11411 0.85803 0.78251 0.81703 0.78624 1.19191 1.20666 1.20672 1.74674 0.96387 1.15927 1.20708 1.85294 1.11854 1.35976 1.65950 0.88842 0.87910 0.88232 0.91753 0.91411 0.91520 0.91908 0.91658 0.91636 0.91050 0.91190 0.89013 0.90324 0.77515 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 36.00 0.38 -0.13 16 2 C 0.16 2.39 8.51 -13.06 -0.11 2.28 16 3 N -0.47 -8.74 11.55 -9.87 -0.11 -8.85 16 4 C 0.19 3.58 5.46 -156.37 -0.85 2.72 16 5 C 0.15 2.83 1.90 -68.88 -0.13 2.70 16 6 H 0.12 2.70 5.36 -51.93 -0.28 2.42 16 7 C -0.10 -1.57 5.36 -26.65 -0.14 -1.72 16 8 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 9 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 10 C 0.04 0.73 5.09 -3.83 -0.02 0.72 16 11 N -0.50 -9.15 4.68 -229.51 -1.07 -10.22 16 12 C 0.04 0.78 5.45 -4.97 -0.03 0.76 16 13 C 0.41 9.77 7.19 -10.99 -0.08 9.69 16 14 O -0.59 -15.35 11.20 5.54 0.06 -15.29 16 15 N -0.55 -14.31 5.29 -10.96 -0.06 -14.37 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 19 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.37 -6.63 11.69 30.90 0.36 -6.27 16 25 O 0.07 1.07 11.31 18.11 0.20 1.28 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.40 6.00 -51.93 -0.31 1.09 16 36 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 37 H 0.09 1.65 8.06 -51.93 -0.42 1.23 16 38 H 0.08 1.60 6.66 -51.93 -0.35 1.25 16 39 H 0.39 9.88 7.90 -40.82 -0.32 9.56 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -32.24 327.18 -6.95 -39.19 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.41 Total: 11.76 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.55 Total: 5.62 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.16 Total: -63.55 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.27 Total: -14.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.24 -6.95 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.829 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds