Wall clock time and date at job start Tue Mar 31 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31136 * 126.54712 * 2 1 4 4 C 1.34493 * 105.61202 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.28683 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46337 * 345.00308 * 5 4 3 7 7 C 1.53037 * 109.45133 * 104.97479 * 5 4 3 8 8 C 1.53118 * 109.27892 * 179.18932 * 7 5 4 9 9 C 1.53124 * 109.16008 * 302.34916 * 8 7 5 10 10 C 1.53036 * 109.27759 * 57.65133 * 9 8 7 11 11 N 1.46843 * 109.52504 * 300.82003 * 10 9 8 12 12 C 1.46900 * 110.99705 * 185.83982 * 11 10 9 13 13 C 1.50705 * 109.47182 * 65.79481 * 12 11 10 14 14 O 1.21288 * 119.99695 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99898 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99845 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99972 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99785 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46904 * 119.99807 * 20 18 16 23 23 H 1.48498 * 109.47144 * 240.00046 * 20 18 16 24 24 N 1.29947 * 107.42321 * 0.24498 * 4 3 2 25 25 O 1.21295 * 110.25306 * 359.57941 * 24 4 3 26 26 H 1.09000 * 109.47365 * 90.00241 * 1 2 3 27 27 H 1.09004 * 109.46942 * 209.99950 * 1 2 3 28 28 H 1.08998 * 109.47499 * 330.00115 * 1 2 3 29 29 H 1.08996 * 109.50651 * 299.13197 * 7 5 4 30 30 H 1.09001 * 109.50257 * 59.25040 * 7 5 4 31 31 H 1.08997 * 109.52579 * 182.44041 * 8 7 5 32 32 H 1.09000 * 109.52350 * 62.24885 * 8 7 5 33 33 H 1.08994 * 109.50502 * 297.71059 * 9 8 7 34 34 H 1.09004 * 109.50104 * 177.59657 * 9 8 7 35 35 H 1.09001 * 109.46076 * 180.80414 * 10 9 8 36 36 H 1.09001 * 109.46079 * 60.83975 * 10 9 8 37 37 H 1.09007 * 109.46827 * 185.78770 * 12 11 10 38 38 H 1.08996 * 109.47631 * 305.78639 * 12 11 10 39 39 H 0.96999 * 120.00200 * 359.97438 * 15 13 12 40 40 H 0.96994 * 119.99957 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 0.0006 5 6 4.8111 1.3888 0.0003 6 1 4.5791 2.4199 -0.2664 7 6 5.4411 1.3522 1.3944 8 6 6.7385 2.1654 1.3845 9 6 7.6822 1.5931 0.3231 10 6 6.9871 1.6228 -1.0399 11 7 5.7524 0.8303 -0.9786 12 6 5.1302 0.7217 -2.3048 13 6 6.0280 -0.0735 -3.2174 14 8 7.0827 -0.5067 -2.8037 15 7 5.6595 -0.3024 -4.4934 16 6 6.4765 -1.0254 -5.3237 17 1 7.4156 -1.4111 -4.9554 18 6 6.0962 -1.2618 -6.6391 19 7 4.9533 -0.7929 -7.0871 20 14 7.2098 -2.2462 -7.7707 21 1 8.4288 -2.6585 -7.0295 22 1 6.4886 -3.4538 -8.2470 23 1 7.5969 -1.4095 -8.9348 24 7 3.4644 -0.7241 -0.0044 25 8 2.3029 -1.0735 0.0005 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 4.7483 1.7811 2.1183 30 1 5.6608 0.3200 1.6675 31 1 7.2130 2.1063 2.3639 32 1 6.5143 3.2060 1.1495 33 1 7.9372 0.5648 0.5793 34 1 8.5906 2.1943 0.2817 35 1 7.6511 1.2028 -1.7954 36 1 6.7449 2.6528 -1.3017 37 1 4.1672 0.2189 -2.2143 38 1 4.9819 1.7187 -2.7194 39 1 4.8162 0.0443 -4.8243 40 1 4.6878 -0.9582 -8.0052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:28 Heat of formation + Delta-G solvation = 36.835021 kcal Electronic energy + Delta-G solvation = -24232.889000 eV Core-core repulsion = 20665.052593 eV Total energy + Delta-G solvation = -3567.836407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -45.53787 -39.44717 -37.66580 -35.75970 -34.02320 -33.74423 -32.99949 -31.20283 -30.70980 -28.83647 -27.55770 -24.99608 -24.38218 -23.16065 -22.90661 -21.14498 -19.49690 -19.16408 -18.09187 -17.83919 -17.42644 -16.13647 -15.64412 -15.09157 -14.70246 -14.59177 -14.49806 -13.92717 -13.82598 -13.70583 -13.58731 -13.35586 -13.19609 -12.82617 -12.48601 -12.12247 -12.01065 -11.61354 -11.52290 -11.45438 -11.18759 -11.05169 -10.94290 -10.66767 -10.55712 -10.34752 -10.29030 -10.20574 -9.69742 -9.45541 -8.44203 -7.97044 -7.86425 -6.39764 -3.80456 1.24123 2.25233 2.87517 3.17626 3.27882 3.35276 3.46398 3.89089 3.91965 4.18421 4.27768 4.77248 4.85188 4.98761 5.02845 5.06433 5.07856 5.16723 5.26653 5.35612 5.38243 5.48171 5.65909 5.67078 5.75422 5.80253 5.82500 5.93387 5.98870 6.02164 6.06898 6.19802 6.28412 6.47766 6.54849 7.23325 7.33781 7.57302 8.08127 8.30233 8.63450 9.19880 9.55867 10.07647 10.78269 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004814 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.715543 B = 5815.116349 C = 7393.436339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.165 3.835 3 N -0.483 5.483 4 C 0.174 3.826 5 C 0.177 3.823 6 H 0.068 0.932 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.054 3.946 11 N -0.502 5.502 12 C 0.048 3.952 13 C 0.448 3.552 14 O -0.573 6.573 15 N -0.564 5.564 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.348 5.348 25 O 0.080 5.920 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.391 0.609 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 6.250 15.314 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.055 4.055 3 N -0.218 5.218 4 C -0.100 4.100 5 C 0.067 3.933 6 H 0.085 0.915 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.153 4.153 10 C -0.073 4.073 11 N -0.228 5.228 12 C -0.083 4.083 13 C 0.234 3.766 14 O -0.457 6.457 15 N -0.201 5.201 16 C -0.426 4.426 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 N -0.052 5.052 25 O 0.018 5.982 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.224 0.776 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.602 5.378 15.544 17.723 hybrid contribution -0.640 0.482 -1.238 1.475 sum -7.242 5.859 14.306 17.071 Atomic orbital electron populations 1.20347 0.80452 1.05530 1.05435 1.28794 0.98915 0.81078 0.96741 1.71844 1.00205 1.29097 1.20666 1.25584 0.94518 0.88418 1.01454 1.19856 0.84557 0.93731 0.95201 0.91480 1.21591 0.96948 1.02144 0.93652 1.21587 0.95396 0.98940 0.99613 1.21586 0.97511 1.02131 0.94074 1.22312 0.91497 0.94179 0.99273 1.61486 1.04188 1.51571 1.05568 1.21836 0.97920 0.99248 0.89342 1.19578 0.88286 0.85861 0.82913 1.90479 1.25124 1.55019 1.75085 1.41857 1.21166 1.48256 1.08828 1.19755 1.02820 1.28669 0.91365 0.87806 1.25262 0.96881 0.98176 0.97657 1.69624 1.21309 1.46040 1.17449 0.85797 0.79915 0.79019 0.79600 1.19192 1.20750 1.20771 1.74809 0.96138 1.15568 1.18661 1.85370 1.11748 1.35804 1.65250 0.88072 0.88573 0.87989 0.91476 0.90443 0.91491 0.92130 0.90669 0.91486 0.87258 0.95701 0.90563 0.93413 0.77624 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.17 1.98 8.51 -13.06 -0.11 1.87 16 3 N -0.48 -7.02 11.55 -9.87 -0.11 -7.14 16 4 C 0.17 2.82 5.26 -156.37 -0.82 2.00 16 5 C 0.18 2.74 2.39 -68.87 -0.16 2.58 16 6 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.10 -1.37 5.35 -26.65 -0.14 -1.51 16 8 C -0.12 -1.35 6.00 -26.61 -0.16 -1.51 16 9 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 10 C 0.05 0.92 5.10 -3.84 -0.02 0.90 16 11 N -0.50 -9.24 4.22 -229.51 -0.97 -10.21 16 12 C 0.05 0.97 5.24 -4.97 -0.03 0.95 16 13 C 0.45 11.21 7.46 -10.98 -0.08 11.13 16 14 O -0.57 -15.91 13.90 5.55 0.08 -15.83 16 15 N -0.56 -14.98 5.29 -10.96 -0.06 -15.04 16 16 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 17 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -25.12 13.05 55.50 0.72 -24.40 16 20 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 N -0.35 -6.08 11.79 30.89 0.36 -5.72 16 25 O 0.08 1.18 11.31 18.12 0.20 1.38 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 2.22 5.78 -51.93 -0.30 1.92 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 1.57 6.29 -51.93 -0.33 1.24 16 38 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.39 10.04 7.90 -40.82 -0.32 9.72 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -33.80 332.20 -6.87 -40.68 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.53 Total: 8.30 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.55 Total: 6.54 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.05 Total: -62.50 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.28 Total: -14.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.80 -6.87 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.511 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds