Wall clock time and date at job start Tue Mar 31 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31136 * 126.54712 * 2 1 4 4 C 1.34493 * 105.61202 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.28683 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46337 * 345.00308 * 5 4 3 7 7 C 1.53037 * 109.45133 * 104.97479 * 5 4 3 8 8 C 1.53118 * 109.27892 * 179.18932 * 7 5 4 9 9 C 1.53124 * 109.16008 * 302.34916 * 8 7 5 10 10 C 1.53036 * 109.27759 * 57.65133 * 9 8 7 11 11 N 1.46843 * 109.52504 * 300.82003 * 10 9 8 12 12 C 1.46900 * 110.99705 * 185.83982 * 11 10 9 13 13 C 1.50705 * 109.47182 * 65.79481 * 12 11 10 14 14 O 1.21288 * 119.99695 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99898 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99845 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99972 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99785 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46904 * 119.99807 * 20 18 16 23 23 H 1.48498 * 109.47144 * 240.00046 * 20 18 16 24 24 N 1.29947 * 107.42321 * 0.24498 * 4 3 2 25 25 O 1.21295 * 110.25306 * 359.57941 * 24 4 3 26 26 H 1.09000 * 109.47365 * 90.00241 * 1 2 3 27 27 H 1.09004 * 109.46942 * 209.99950 * 1 2 3 28 28 H 1.08998 * 109.47499 * 330.00115 * 1 2 3 29 29 H 1.08996 * 109.50651 * 299.13197 * 7 5 4 30 30 H 1.09001 * 109.50257 * 59.25040 * 7 5 4 31 31 H 1.08997 * 109.52579 * 182.44041 * 8 7 5 32 32 H 1.09000 * 109.52350 * 62.24885 * 8 7 5 33 33 H 1.08994 * 109.50502 * 297.71059 * 9 8 7 34 34 H 1.09004 * 109.50104 * 177.59657 * 9 8 7 35 35 H 1.09001 * 109.46076 * 180.80414 * 10 9 8 36 36 H 1.09001 * 109.46079 * 60.83975 * 10 9 8 37 37 H 1.09007 * 109.46827 * 185.78770 * 12 11 10 38 38 H 1.08996 * 109.47631 * 305.78639 * 12 11 10 39 39 H 0.96999 * 120.00200 * 359.97438 * 15 13 12 40 40 H 0.96994 * 119.99957 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 0.0006 5 6 4.8111 1.3888 0.0003 6 1 4.5791 2.4199 -0.2664 7 6 5.4411 1.3522 1.3944 8 6 6.7385 2.1654 1.3845 9 6 7.6822 1.5931 0.3231 10 6 6.9871 1.6228 -1.0399 11 7 5.7524 0.8303 -0.9786 12 6 5.1302 0.7217 -2.3048 13 6 6.0280 -0.0735 -3.2174 14 8 7.0827 -0.5067 -2.8037 15 7 5.6595 -0.3024 -4.4934 16 6 6.4765 -1.0254 -5.3237 17 1 7.4156 -1.4111 -4.9554 18 6 6.0962 -1.2618 -6.6391 19 7 4.9533 -0.7929 -7.0871 20 14 7.2098 -2.2462 -7.7707 21 1 8.4288 -2.6585 -7.0295 22 1 6.4886 -3.4538 -8.2470 23 1 7.5969 -1.4095 -8.9348 24 7 3.4644 -0.7241 -0.0044 25 8 2.3029 -1.0735 0.0005 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 4.7483 1.7811 2.1183 30 1 5.6608 0.3200 1.6675 31 1 7.2130 2.1063 2.3639 32 1 6.5143 3.2060 1.1495 33 1 7.9372 0.5648 0.5793 34 1 8.5906 2.1943 0.2817 35 1 7.6511 1.2028 -1.7954 36 1 6.7449 2.6528 -1.3017 37 1 4.1672 0.2189 -2.2143 38 1 4.9819 1.7187 -2.7194 39 1 4.8162 0.0443 -4.8243 40 1 4.6878 -0.9582 -8.0052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609417637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:27 Heat of formation + Delta-G solvation = 9.860265 kcal Electronic energy + Delta-G solvation = -24234.058714 eV Core-core repulsion = 20665.052593 eV Total energy + Delta-G solvation = -3569.006120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -46.66440 -40.94703 -39.43697 -36.85733 -36.05319 -34.80759 -34.32573 -33.31204 -31.83207 -29.64459 -29.18401 -26.71048 -25.78672 -24.30977 -24.21896 -22.22704 -21.15925 -20.59522 -19.94512 -19.22736 -18.54773 -17.88100 -17.06656 -16.67718 -16.43386 -15.88588 -15.78266 -15.52577 -15.30335 -14.95262 -14.73797 -14.23739 -14.15272 -14.06497 -13.87560 -13.57668 -13.37786 -13.17734 -12.94570 -12.86187 -12.62020 -12.45951 -12.32374 -12.13511 -12.06823 -11.70026 -11.65020 -11.64126 -11.38257 -10.80959 -10.35358 -10.06369 -9.37701 -8.51123 -6.00748 0.22015 1.13307 1.33448 1.38812 1.53816 1.94522 1.99678 2.21250 2.37947 2.64513 3.13148 3.15132 3.27833 3.70778 3.82309 3.92224 4.00563 4.17851 4.20854 4.21808 4.29608 4.32915 4.48011 4.56568 4.63594 4.66756 4.76956 4.85788 4.89962 4.96801 5.02703 5.13340 5.15465 5.26048 5.36305 5.42090 5.76307 5.98107 6.03600 6.52949 7.06483 7.23261 7.46646 8.02041 8.66946 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004814 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.715543 B = 5815.116349 C = 7393.436339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.180 3.820 3 N -0.503 5.503 4 C 0.165 3.835 5 C 0.176 3.824 6 H 0.079 0.921 7 C -0.099 4.099 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.054 3.946 11 N -0.521 5.521 12 C 0.065 3.935 13 C 0.445 3.555 14 O -0.605 6.605 15 N -0.573 5.573 16 C -0.333 4.333 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.922 5.922 20 Si 0.997 3.003 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.268 1.268 24 N -0.389 5.389 25 O 0.071 5.929 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.393 0.607 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.400 7.280 15.990 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 N -0.238 5.238 4 C -0.108 4.108 5 C 0.066 3.934 6 H 0.097 0.903 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.073 4.073 11 N -0.247 5.247 12 C -0.066 4.066 13 C 0.232 3.768 14 O -0.491 6.491 15 N -0.210 5.210 16 C -0.462 4.462 17 H 0.098 0.902 18 C -0.212 4.212 19 N -0.563 5.563 20 Si 0.820 3.180 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.193 1.193 24 N -0.096 5.096 25 O 0.011 5.989 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.226 0.774 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.863 6.429 16.232 19.148 hybrid contribution -0.365 0.163 -1.427 1.482 sum -8.228 6.592 14.805 18.175 Atomic orbital electron populations 1.20768 0.76193 1.07741 1.06967 1.29979 1.00676 0.79745 0.93591 1.71860 0.99768 1.29904 1.22221 1.25788 0.95403 0.88320 1.01312 1.20015 0.84017 0.93836 0.95497 0.90328 1.21597 0.98173 1.01563 0.92461 1.21568 0.93865 0.99254 0.99886 1.21561 0.98719 1.01580 0.92934 1.22265 0.90528 0.94328 1.00195 1.61433 1.05273 1.53182 1.04827 1.21573 0.96360 0.98931 0.89766 1.20411 0.88315 0.85231 0.82843 1.90454 1.26771 1.56208 1.75675 1.41922 1.21102 1.48545 1.09404 1.19720 1.02978 1.30795 0.92730 0.90156 1.26097 0.98249 0.98540 0.98344 1.69686 1.22203 1.46158 1.18208 0.84825 0.77786 0.77888 0.77534 1.19741 1.19526 1.19274 1.74793 0.97687 1.16522 1.20615 1.85316 1.11376 1.36585 1.65634 0.86537 0.85927 0.86139 0.89324 0.92421 0.89013 0.90243 0.92853 0.89344 0.91420 0.93959 0.90890 0.91751 0.77393 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.18 4.06 8.51 88.38 0.75 4.81 16 3 N -0.50 -14.04 11.55 -303.21 -3.50 -17.54 16 4 C 0.16 5.30 5.26 138.46 0.73 6.03 16 5 C 0.18 5.32 2.39 44.19 0.11 5.42 16 6 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 7 C -0.10 -2.44 5.35 30.65 0.16 -2.28 16 8 C -0.11 -2.20 6.00 30.68 0.18 -2.01 16 9 C -0.11 -2.93 6.09 30.65 0.19 -2.74 16 10 C 0.05 1.83 5.10 86.33 0.44 2.27 16 11 N -0.52 -19.40 4.22 -880.04 -3.71 -23.11 16 12 C 0.07 2.70 5.24 85.56 0.45 3.15 16 13 C 0.45 23.17 7.46 87.66 0.65 23.82 16 14 O -0.61 -35.34 13.90 -3.06 -0.04 -35.38 16 15 N -0.57 -31.52 5.29 -306.98 -1.62 -33.14 16 16 C -0.33 -19.69 9.68 84.04 0.81 -18.88 16 17 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -51.24 13.05 21.66 0.28 -50.96 16 20 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 N -0.39 -13.80 11.79 -60.34 -0.71 -14.51 16 25 O 0.07 2.07 11.31 74.90 0.85 2.92 16 26 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.07 2.88 5.78 -2.39 -0.01 2.87 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 3.07 6.29 -2.38 -0.01 3.06 16 38 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 39 H 0.39 20.82 7.90 -92.71 -0.73 20.09 16 40 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -76.13 332.20 -0.41 -76.54 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.34 Total: 29.56 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 5.69 Total: 19.58 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -9.27 Total: -139.26 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: 0.80 Total: -32.46 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -76.13 -0.41 -76.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.398 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds