Wall clock time and date at job start Tue Mar 31 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.88706 * 2 1 4 4 C 1.55123 * 110.93934 * 124.07423 * 2 1 3 5 5 N 1.47427 * 104.72532 * 155.28633 * 4 2 1 6 6 C 1.34772 * 125.64842 * 155.81408 * 5 4 2 7 7 O 1.21838 * 120.00458 * 359.72676 * 6 5 4 8 8 N 1.33840 * 119.99876 * 179.72229 * 6 5 4 9 9 C 1.32929 * 120.00270 * 180.02562 * 8 6 5 10 10 C 1.41215 * 126.37580 * 359.96815 * 9 8 6 11 11 C 1.34959 * 108.24169 * 180.02562 * 10 9 8 12 12 N 1.36449 * 108.94659 * 0.02562 * 11 10 9 13 13 C 1.46507 * 125.84788 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47006 * 85.02301 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72165 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 N 1.37415 * 126.38153 * 180.25213 * 9 8 6 23 23 H 0.97006 * 126.36480 * 0.02562 * 22 9 8 24 24 C 1.47022 * 108.69853 * 335.55656 * 5 4 2 25 25 C 1.54319 * 107.27338 * 1.28541 * 24 5 4 26 26 H 1.09008 * 110.72018 * 263.65010 * 25 24 5 27 27 O 1.42902 * 110.72355 * 140.55660 * 25 24 5 28 28 H 1.08999 * 109.47177 * 183.88048 * 1 2 3 29 29 H 1.09003 * 109.47301 * 303.88194 * 1 2 3 30 30 H 1.09007 * 109.47228 * 63.88047 * 1 2 3 31 31 H 1.09002 * 110.49933 * 36.44866 * 4 2 1 32 32 H 1.08997 * 110.34760 * 274.05451 * 4 2 1 33 33 H 1.07996 * 125.87533 * 0.02562 * 10 9 8 34 34 H 1.08002 * 125.52296 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.47049 * 325.01729 * 13 12 11 36 36 H 1.09001 * 109.46896 * 205.02000 * 13 12 11 37 37 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 38 38 H 1.09008 * 109.88144 * 120.70058 * 24 5 4 39 39 H 1.09003 * 109.88365 * 241.70827 * 24 5 4 40 40 H 0.96704 * 114.00007 * 61.44947 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0844 -0.8117 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4490 -1.5603 1.5928 7 8 4.3019 -1.4987 2.8007 8 7 5.6244 -1.9439 1.0806 9 6 6.6313 -2.2581 1.8896 10 6 6.6100 -2.2343 3.3014 11 6 7.8239 -2.6188 3.7487 12 7 8.6256 -2.8886 2.6780 13 6 10.0196 -3.3349 2.7408 14 6 10.0608 -4.8327 2.9015 15 1 9.1407 -5.3954 2.9563 16 6 11.2733 -5.4841 2.9837 17 7 12.3938 -4.7989 2.9164 18 14 11.3242 -7.3399 3.1905 19 1 11.3490 -7.9865 1.8540 20 1 12.5442 -7.7202 3.9471 21 1 10.1202 -7.7882 3.9352 22 7 7.8883 -2.6613 1.5079 23 1 8.2060 -2.7693 0.5977 24 6 3.4678 -1.2731 -0.6968 25 6 2.0862 -0.8075 -1.2025 26 1 1.4481 -1.6631 -1.4241 27 8 2.2243 0.0291 -2.3527 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3634 0.5729 0.8532 30 1 -0.3634 0.4524 -0.9228 31 1 1.4538 -1.6783 1.3986 32 1 2.1524 -0.1801 2.0858 33 1 5.7675 -1.9563 3.9171 34 1 8.1137 -2.6999 4.7860 35 1 10.5137 -2.8645 3.5909 36 1 10.5328 -3.0539 1.8211 37 1 13.2467 -5.2572 2.9739 38 1 4.2425 -0.5982 -1.0610 39 1 3.6685 -2.2877 -1.0410 40 1 2.6396 -0.4075 -3.1091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611261681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:08 Heat of formation + Delta-G solvation = 26.971834 kcal Electronic energy + Delta-G solvation = -23024.489599 eV Core-core repulsion = 19456.225492 eV Total energy + Delta-G solvation = -3568.264107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78280 -39.68795 -37.91395 -35.53281 -34.20192 -32.95033 -32.59193 -31.03811 -30.54432 -28.51576 -27.06953 -26.05008 -23.44655 -22.69524 -21.44879 -21.17823 -20.41467 -19.12391 -17.54747 -17.18061 -16.83703 -16.13325 -16.07576 -15.30269 -14.97235 -14.75533 -14.42534 -14.18856 -14.02474 -13.66251 -13.25709 -13.01171 -12.89494 -12.79822 -12.45103 -12.39474 -12.04783 -11.97076 -11.60299 -11.35807 -11.20385 -11.07089 -10.54000 -10.53023 -10.40693 -10.29215 -9.68448 -9.57215 -9.03038 -8.92330 -8.36141 -8.24298 -6.88729 -6.48524 -4.65665 1.78710 2.07720 3.05325 3.12986 3.14406 3.18315 3.33006 4.01825 4.06313 4.33865 4.45657 4.51950 4.62821 4.81247 4.89420 5.09016 5.27621 5.29017 5.34951 5.50229 5.66127 5.67934 5.82919 5.86709 5.92812 5.95962 5.99673 6.14255 6.16023 6.52759 6.56125 6.65940 6.92866 7.29942 7.39275 7.43580 7.51550 7.63360 7.84508 8.24104 8.43456 8.47917 9.04883 9.57968 10.52436 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.032077 B = 0.002735 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.698438 B =10236.456484 C =10481.936791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.092 0.908 4 C 0.129 3.871 5 N -0.616 5.616 6 C 0.703 3.297 7 O -0.628 6.628 8 N -0.709 5.709 9 C 0.486 3.514 10 C -0.334 4.334 11 C 0.162 3.838 12 N -0.346 5.346 13 C 0.255 3.745 14 C -0.558 4.558 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.887 5.887 18 Si 0.910 3.090 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.270 1.270 22 N -0.471 5.471 23 H 0.444 0.556 24 C 0.094 3.906 25 C 0.091 3.909 26 H 0.072 0.928 27 O -0.559 6.559 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.183 0.817 34 H 0.187 0.813 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.444 6.289 -5.886 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.110 0.890 4 C 0.005 3.995 5 N -0.354 5.354 6 C 0.405 3.595 7 O -0.510 6.510 8 N -0.474 5.474 9 C 0.233 3.767 10 C -0.367 4.367 11 C 0.017 3.983 12 N -0.132 5.132 13 C 0.139 3.861 14 C -0.596 4.596 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.194 1.194 22 N -0.194 5.194 23 H 0.291 0.709 24 C -0.031 4.031 25 C 0.032 3.968 26 H 0.089 0.911 27 O -0.364 6.364 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.200 0.800 34 H 0.204 0.796 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.150 6.597 -5.736 16.633 hybrid contribution 0.656 -1.572 -0.160 1.711 sum -13.494 5.024 -5.896 15.560 Atomic orbital electron populations 1.21690 0.93518 1.02129 1.02323 1.22426 0.96216 1.00198 0.92897 0.89004 1.22099 0.82799 0.97580 0.96977 1.46899 1.11207 1.71929 1.05363 1.16142 0.82796 0.77777 0.82807 1.90739 1.84700 1.60801 1.14743 1.68052 1.00783 1.42381 1.36150 1.18704 0.83417 0.84663 0.89953 1.22386 0.99995 1.19912 0.94395 1.22802 0.90274 0.92328 0.92854 1.47984 1.11509 1.58402 0.95268 1.20038 0.69402 0.96225 1.00449 1.21420 0.93648 0.90767 1.53743 0.91227 1.24960 0.94938 0.99732 0.93915 1.69899 0.97900 1.36639 1.47918 0.86290 0.78055 0.83431 0.78616 1.20225 1.20677 1.19425 1.44427 1.08139 1.64331 1.02470 0.70911 1.22409 0.97104 1.01493 0.82089 1.22985 0.95111 0.92711 0.86010 0.91058 1.86522 1.84072 1.41960 1.23817 0.92390 0.92068 0.91889 0.91997 0.90308 0.80049 0.79607 0.91428 0.93108 0.91851 0.91095 0.91789 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.31 37.16 0.35 -0.79 16 2 C -0.10 -1.05 3.38 -88.36 -0.30 -1.35 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.13 1.72 6.38 -2.41 -0.02 1.71 16 5 N -0.62 -10.23 3.32 -176.33 -0.59 -10.82 16 6 C 0.70 14.50 8.40 -87.76 -0.74 13.76 16 7 O -0.63 -14.19 13.52 5.07 0.07 -14.12 16 8 N -0.71 -14.44 10.05 -15.79 -0.16 -14.60 16 9 C 0.49 9.66 8.07 -155.30 -1.25 8.40 16 10 C -0.33 -6.39 9.52 -39.62 -0.38 -6.76 16 11 C 0.16 2.79 11.45 -16.66 -0.19 2.60 16 12 N -0.35 -6.48 3.63 -62.24 -0.23 -6.71 16 13 C 0.26 5.34 6.19 -5.19 -0.03 5.30 16 14 C -0.56 -13.29 9.39 -34.44 -0.32 -13.61 16 15 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -22.55 13.29 55.43 0.74 -21.81 16 18 Si 0.91 19.29 29.54 -169.99 -5.02 14.26 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 N -0.47 -8.53 7.38 31.33 0.23 -8.30 16 23 H 0.44 7.08 8.96 -182.55 -1.64 5.45 16 24 C 0.09 1.24 6.59 -3.07 -0.02 1.22 16 25 C 0.09 0.95 3.79 -24.90 -0.09 0.85 16 26 H 0.07 0.64 8.04 -51.92 -0.42 0.22 16 27 O -0.56 -5.49 13.39 -35.23 -0.47 -5.96 16 28 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.77 7.99 -51.93 -0.41 0.35 16 32 H 0.08 1.11 8.03 -51.93 -0.42 0.70 16 33 H 0.18 3.67 5.77 -52.49 -0.30 3.37 16 34 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.07 1.00 8.06 -51.92 -0.42 0.58 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.38 2.16 9.11 45.56 0.42 2.57 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -31.05 340.45 -9.51 -40.56 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.12 Total: 9.44 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: -3.09 Total: 12.93 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.00 Total: -62.24 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.40 Total: -20.09 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.05 -9.51 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611261681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.530 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds