Wall clock time and date at job start Tue Mar 31 2020 03:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.91793 * 2 1 4 4 C 1.54911 * 111.00121 * 236.09806 * 2 1 3 5 5 N 1.47416 * 104.83233 * 204.91907 * 4 2 1 6 6 C 1.34779 * 125.65134 * 204.09374 * 5 4 2 7 7 O 1.21843 * 119.99780 * 359.97438 * 6 5 4 8 8 N 1.33835 * 120.00224 * 179.97438 * 6 5 4 9 9 C 1.32928 * 119.99841 * 179.97438 * 8 6 5 10 10 C 1.41215 * 126.38094 * 0.03297 * 9 8 6 11 11 C 1.34958 * 108.24544 * 179.73606 * 10 9 8 12 12 N 1.36447 * 108.94607 * 359.97438 * 11 10 9 13 13 C 1.46503 * 125.85036 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47067 * 85.03048 * 13 12 11 15 15 H 1.08002 * 119.99721 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00043 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99829 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00226 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47177 * 89.99229 * 18 16 14 20 20 H 1.48500 * 109.47524 * 209.99952 * 18 16 14 21 21 H 1.48508 * 109.47004 * 329.99754 * 18 16 14 22 22 N 1.37424 * 126.38109 * 179.71502 * 9 8 6 23 23 H 0.96997 * 126.35716 * 0.24245 * 22 9 8 24 24 C 1.47027 * 108.70635 * 24.35516 * 5 4 2 25 25 C 1.54341 * 107.26118 * 358.58819 * 24 5 4 26 26 H 1.09003 * 110.99836 * 219.60113 * 25 24 5 27 27 O 1.42894 * 110.51670 * 96.45353 * 25 24 5 28 28 H 1.08997 * 109.47243 * 182.44919 * 1 2 3 29 29 H 1.09007 * 109.46808 * 302.44636 * 1 2 3 30 30 H 1.08995 * 109.47327 * 62.44404 * 1 2 3 31 31 H 1.09004 * 110.36481 * 86.07587 * 4 2 1 32 32 H 1.09000 * 110.36519 * 323.75865 * 4 2 1 33 33 H 1.08002 * 125.87603 * 359.75193 * 10 9 8 34 34 H 1.07991 * 125.52239 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.47405 * 205.02593 * 13 12 11 36 36 H 1.09000 * 109.47328 * 325.02911 * 13 12 11 37 37 H 0.97008 * 119.99438 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.88701 * 118.13268 * 24 5 4 39 39 H 1.09000 * 109.88603 * 239.30405 * 24 5 4 40 40 H 0.96706 * 114.00456 * 66.49676 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7734 6 6 4.4476 -1.5617 -1.5941 7 8 4.2998 -1.5006 -2.8020 8 7 5.6232 -1.9453 -1.0823 9 6 6.6295 -2.2599 -1.8918 10 6 6.6076 -2.2368 -3.3036 11 6 7.8227 -2.6166 -3.7514 12 7 8.6260 -2.8827 -2.6810 13 6 10.0214 -3.3244 -2.7443 14 6 10.9229 -2.1238 -2.8744 15 1 10.4988 -1.1311 -2.9072 16 6 12.2890 -2.2927 -2.9527 17 7 12.8054 -3.5017 -2.9133 18 14 13.4064 -0.8046 -3.1147 19 1 13.7927 -0.3261 -1.7630 20 1 14.6259 -1.1815 -3.8738 21 1 12.6889 0.2770 -3.8363 22 7 7.8870 -2.6626 -1.5106 23 1 8.2042 -2.7731 -0.6007 24 6 3.4657 -1.2795 0.6959 25 6 2.0861 -0.8080 1.2022 26 1 2.1893 -0.1707 2.0805 27 8 1.2479 -1.9292 1.4890 28 1 -0.3633 -1.0267 0.0439 29 1 -0.3633 0.5514 0.8673 30 1 -0.3634 0.4754 -0.9110 31 1 2.1559 -0.1720 -2.0837 32 1 1.4518 -1.6703 -1.4025 33 1 5.7636 -1.9621 -3.9190 34 1 8.1125 -2.6961 -4.7886 35 1 10.2716 -3.8696 -1.8342 36 1 10.1575 -3.9762 -3.6073 37 1 13.7666 -3.6204 -2.9680 38 1 3.6601 -2.2965 1.0366 39 1 4.2424 -0.6086 1.0630 40 1 1.5517 -2.4675 2.2327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611261683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:14 Heat of formation + Delta-G solvation = 5.856896 kcal Electronic energy + Delta-G solvation = -23105.279932 eV Core-core repulsion = 19536.100213 eV Total energy + Delta-G solvation = -3569.179719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27900 -40.89378 -39.19635 -36.27996 -35.81435 -34.62084 -33.55966 -32.51292 -32.13529 -29.72275 -28.58118 -27.22011 -24.97862 -23.98371 -22.83552 -22.59921 -21.11223 -20.52008 -19.00887 -18.73917 -18.11604 -17.56695 -16.99677 -16.69595 -16.60589 -16.04822 -15.65750 -15.48685 -15.21641 -14.96896 -14.51229 -14.48272 -14.32052 -14.05908 -13.66460 -13.47476 -13.27380 -13.11105 -13.01090 -12.74932 -12.33704 -12.29390 -12.08181 -11.92999 -11.37550 -11.32888 -11.22872 -10.92882 -10.77328 -10.52406 -9.94023 -9.54847 -8.54253 -8.20596 -6.55700 0.29311 0.59046 1.38100 1.42377 1.51063 1.65287 2.13408 2.31492 2.91596 2.98613 3.08273 3.25466 3.57199 3.67046 3.91928 3.98221 4.23566 4.32932 4.43469 4.54066 4.58986 4.59650 4.72479 4.79215 4.86423 4.87738 4.94100 4.96838 5.14461 5.21068 5.25124 5.51260 5.52672 5.66779 5.71045 5.85414 6.12877 6.33062 6.57643 6.82656 6.92977 7.01304 7.18107 8.05362 8.66625 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.033568 B = 0.002730 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.938434 B =10252.690361 C =10358.886323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 H 0.104 0.896 4 C 0.126 3.874 5 N -0.620 5.620 6 C 0.685 3.315 7 O -0.662 6.662 8 N -0.715 5.715 9 C 0.470 3.530 10 C -0.348 4.348 11 C 0.179 3.821 12 N -0.350 5.350 13 C 0.268 3.732 14 C -0.565 4.565 15 H 0.059 0.941 16 C 0.030 3.970 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.276 1.276 20 H -0.277 1.277 21 H -0.270 1.270 22 N -0.465 5.465 23 H 0.452 0.548 24 C 0.091 3.909 25 C 0.104 3.896 26 H 0.108 0.892 27 O -0.568 6.568 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.170 0.830 34 H 0.224 0.776 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.274 0.726 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.863 3.799 7.602 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 H 0.122 0.878 4 C 0.003 3.997 5 N -0.356 5.356 6 C 0.386 3.614 7 O -0.547 6.547 8 N -0.480 5.480 9 C 0.217 3.783 10 C -0.381 4.381 11 C 0.035 3.965 12 N -0.135 5.135 13 C 0.151 3.849 14 C -0.603 4.603 15 H 0.077 0.923 16 C -0.173 4.173 17 N -0.551 5.551 18 Si 0.789 3.211 19 H -0.202 1.202 20 H -0.202 1.202 21 H -0.195 1.195 22 N -0.189 5.189 23 H 0.300 0.700 24 C -0.033 4.033 25 C 0.045 3.955 26 H 0.126 0.874 27 O -0.377 6.377 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.187 0.813 34 H 0.240 0.760 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.683 3.797 7.388 17.747 hybrid contribution 1.415 0.181 0.034 1.427 sum -14.269 3.978 7.423 16.569 Atomic orbital electron populations 1.21461 0.91778 1.02573 1.02521 1.22484 0.98073 0.98508 0.92116 0.87826 1.22175 0.81719 0.97677 0.98155 1.47149 1.11155 1.70317 1.06955 1.16546 0.83659 0.78192 0.83037 1.90699 1.85428 1.62356 1.16242 1.68106 1.01090 1.42602 1.36239 1.18926 0.83907 0.84916 0.90567 1.22271 1.00548 1.21064 0.94214 1.23320 0.88723 0.90476 0.93981 1.47859 1.10614 1.59208 0.95849 1.19743 0.69543 0.95451 1.00161 1.21612 0.91814 0.93367 1.53553 0.92275 1.25598 0.99083 0.98828 0.93744 1.69966 1.13726 1.22459 1.48944 0.85454 0.78155 0.79162 0.78358 1.20210 1.20247 1.19490 1.44372 1.07106 1.64639 1.02767 0.69966 1.22676 0.99076 1.01567 0.79964 1.22832 0.86788 0.88049 0.97869 0.87432 1.86460 1.52336 1.41907 1.56966 0.92457 0.90714 0.92032 0.92301 0.92810 0.81320 0.75979 0.93812 0.91054 0.91700 0.92035 0.91397 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.02 71.98 0.65 -1.33 16 2 C -0.09 -1.79 3.57 -9.40 -0.03 -1.82 16 3 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.13 3.58 6.37 86.86 0.55 4.14 16 5 N -0.62 -21.17 3.33 -830.35 -2.76 -23.93 16 6 C 0.68 29.33 8.40 179.35 1.51 30.84 16 7 O -0.66 -31.59 13.52 -4.81 -0.06 -31.66 16 8 N -0.72 -29.77 10.05 -322.54 -3.24 -33.01 16 9 C 0.47 18.96 8.07 133.95 1.08 20.04 16 10 C -0.35 -13.52 9.52 22.25 0.21 -13.31 16 11 C 0.18 6.01 11.45 83.22 0.95 6.97 16 12 N -0.35 -12.86 3.63 -350.84 -1.28 -14.14 16 13 C 0.27 11.01 6.19 85.63 0.53 11.54 16 14 C -0.57 -26.48 9.39 25.60 0.24 -26.24 16 15 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.03 1.43 5.46 84.65 0.46 1.89 16 17 N -0.91 -45.80 13.29 21.45 0.28 -45.52 16 18 Si 0.96 38.84 29.54 68.60 2.03 40.87 16 19 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 N -0.47 -16.79 7.38 -54.78 -0.40 -17.19 16 23 H 0.45 14.34 8.96 -213.29 -1.91 12.43 16 24 C 0.09 2.29 6.58 86.73 0.57 2.86 16 25 C 0.10 1.82 4.09 31.79 0.13 1.95 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 O -0.57 -9.72 11.97 -148.98 -1.78 -11.51 16 28 H 0.06 1.05 7.25 -2.39 -0.02 1.04 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 32 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 33 H 0.17 7.11 5.77 -2.91 -0.02 7.10 16 34 H 0.22 5.58 8.06 -2.92 -0.02 5.56 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.27 13.06 8.31 -92.70 -0.77 12.29 16 38 H 0.06 1.60 8.07 -2.39 -0.02 1.58 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.40 3.58 9.12 -74.05 -0.68 2.91 16 Total: -1.00 -67.08 338.55 -1.88 -68.96 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -1.51 Total: 29.60 kcal Atomic # 6 Polarization: 30.67 SS G_CDS: 6.85 Total: 37.53 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -7.40 Total: -133.79 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.85 Total: -43.16 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -67.08 -1.88 -68.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611261683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.813 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds