Wall clock time and date at job start Tue Mar 31 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46485 * 2 1 4 4 C 1.53002 * 109.46858 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47353 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47467 * 180.02562 * 5 4 3 7 7 C 1.34769 * 120.00323 * 180.02562 * 6 5 4 8 8 O 1.21365 * 119.99967 * 359.97438 * 7 6 5 9 9 C 1.49310 * 120.00069 * 179.97438 * 7 6 5 10 10 O 1.21401 * 120.00204 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99824 * 179.97438 * 9 7 6 12 12 C 1.40291 * 119.99920 * 179.97438 * 11 9 7 13 13 C 1.40728 * 126.10038 * 359.96768 * 12 11 9 14 14 N 1.30879 * 108.37511 * 179.78865 * 13 12 11 15 15 N 1.40063 * 108.43330 * 0.38015 * 14 13 12 16 16 C 1.37301 * 126.05067 * 179.87892 * 15 14 13 17 17 H 1.08002 * 119.99622 * 179.68466 * 16 15 14 18 18 C 1.39003 * 119.99972 * 359.96617 * 16 15 14 19 19 N 1.31284 * 120.00043 * 359.72316 * 18 16 15 20 20 Si 1.86801 * 119.99884 * 179.72361 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99998 * 20 18 16 22 22 H 1.48499 * 109.47039 * 209.99949 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99749 * 20 18 16 24 24 C 1.35786 * 126.10045 * 180.02562 * 12 11 9 25 25 H 1.09004 * 109.47244 * 299.99756 * 1 2 3 26 26 H 1.09001 * 109.47575 * 60.00075 * 1 2 3 27 27 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46745 * 240.00203 * 2 1 3 29 29 H 1.08998 * 109.47072 * 119.99961 * 2 1 3 30 30 H 1.09001 * 109.47464 * 60.00643 * 3 2 1 31 31 H 1.08998 * 109.47433 * 299.99740 * 3 2 1 32 32 H 1.09004 * 109.47056 * 60.00130 * 4 3 2 33 33 H 1.09001 * 109.47389 * 300.00040 * 4 3 2 34 34 H 1.08996 * 109.47079 * 59.99774 * 5 4 3 35 35 H 1.09009 * 109.46758 * 300.00065 * 5 4 3 36 36 H 0.97005 * 119.99816 * 0.02562 * 6 5 4 37 37 H 0.97005 * 120.00106 * 0.02562 * 11 9 7 38 38 H 1.07994 * 125.80747 * 359.97438 * 13 12 11 39 39 H 0.97004 * 119.99619 * 180.02562 * 19 18 16 40 40 H 1.08006 * 126.25013 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0799 2.8852 0.0000 6 7 5.5449 2.8853 0.0000 7 6 6.2187 4.0524 0.0000 8 8 5.6118 5.1035 -0.0005 9 6 7.7118 4.0525 0.0006 10 8 8.3189 3.0012 0.0006 11 7 8.3856 5.2198 0.0001 12 6 9.7885 5.2198 0.0011 13 6 10.6177 4.0828 0.0034 14 7 11.8644 4.4814 -0.0008 15 7 11.8816 5.8819 0.0029 16 6 13.0016 6.6762 0.0027 17 1 12.9009 7.7515 0.0006 18 6 14.2649 6.0963 -0.0008 19 7 14.3872 4.7892 0.0016 20 14 15.7885 7.1770 -0.0090 21 1 16.1976 7.4664 1.3890 22 1 16.8911 6.4728 -0.7116 23 1 15.4882 8.4508 -0.7107 24 6 10.5885 6.3170 0.0013 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9336 0.9287 -0.8892 33 1 3.9329 0.9290 0.8908 34 1 3.7161 3.3995 0.8895 35 1 3.7168 3.3984 -0.8905 36 1 6.0299 2.0452 0.0000 37 1 7.9005 6.0598 -0.0003 38 1 10.2824 3.0563 0.0051 39 1 15.2688 4.3846 -0.0005 40 1 10.2610 7.3462 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746344140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:48 Heat of formation + Delta-G solvation = -6.390156 kcal Electronic energy + Delta-G solvation = -22190.836283 eV Core-core repulsion = 18621.125491 eV Total energy + Delta-G solvation = -3569.710791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47959 -39.50014 -38.00137 -36.78784 -34.94041 -34.10957 -33.15990 -31.18099 -30.32302 -28.11387 -26.79801 -25.18907 -23.73141 -22.08347 -21.53766 -21.01220 -20.18540 -19.46301 -18.13384 -17.43667 -16.42403 -16.38146 -15.57079 -15.54689 -15.21461 -15.09701 -14.56350 -14.12448 -13.97281 -13.69462 -13.58890 -13.32463 -13.07983 -12.98766 -12.51847 -12.06366 -11.74244 -11.61150 -11.51162 -11.43352 -11.29256 -11.25064 -11.14383 -10.91741 -10.84765 -10.55812 -10.29339 -9.29445 -9.22986 -9.12953 -8.87884 -8.13182 -6.78161 -6.60708 -4.28055 1.66058 2.60507 2.93219 3.03739 3.08618 3.33088 3.71728 3.75379 3.97180 4.35729 4.36914 4.51367 4.58125 4.68487 4.83774 4.91503 4.97940 5.03205 5.16385 5.25542 5.33980 5.47428 5.49932 5.63232 5.68094 5.78758 5.92036 5.97064 6.18615 6.20281 6.35831 6.75431 6.88581 6.91680 7.16042 7.22064 7.76209 7.85820 8.10292 8.18229 8.48590 8.69337 9.30967 9.59573 10.35108 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.062632 B = 0.002174 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.950042 B =12877.456506 C =13288.044192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.134 4.134 5 C 0.117 3.883 6 N -0.706 5.706 7 C 0.514 3.486 8 O -0.529 6.529 9 C 0.483 3.517 10 O -0.524 6.524 11 N -0.583 5.583 12 C -0.070 4.070 13 C -0.027 4.027 14 N -0.261 5.261 15 N -0.138 5.138 16 C -0.322 4.322 17 H 0.118 0.882 18 C 0.046 3.954 19 N -0.768 5.768 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.077 4.077 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.409 0.591 38 H 0.178 0.822 39 H 0.276 0.724 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 -5.037 -0.011 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.172 4.172 5 C -0.006 4.006 6 N -0.360 5.360 7 C 0.296 3.704 8 O -0.406 6.406 9 C 0.264 3.736 10 O -0.401 6.401 11 N -0.226 5.226 12 C -0.176 4.176 13 C -0.202 4.202 14 N -0.091 5.091 15 N 0.095 4.905 16 C -0.454 4.454 17 H 0.136 0.864 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.229 4.229 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.244 0.756 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.485 -5.574 -0.019 19.307 hybrid contribution -0.307 0.825 0.002 0.880 sum -18.792 -4.749 -0.017 19.383 Atomic orbital electron populations 1.21780 0.95839 1.01618 1.01862 1.21529 0.95902 0.96635 1.02220 1.21528 0.94108 0.97230 1.02622 1.21841 0.96411 0.95641 1.03299 1.21464 0.78850 0.97513 1.02756 1.45736 1.07359 1.09134 1.73724 1.20293 0.88817 0.84213 0.77123 1.90730 1.70251 1.31138 1.48433 1.19657 0.87404 0.84804 0.81728 1.90652 1.68775 1.30970 1.49717 1.42150 1.05115 1.08110 1.67215 1.17262 0.80709 0.94572 1.25034 1.24147 0.89960 0.98740 1.07380 1.78262 1.16970 0.88104 1.25798 1.44565 1.03019 1.04436 1.38487 1.19932 0.81978 0.90278 1.53261 0.86422 1.25667 0.99831 0.96261 0.95371 1.70210 1.24970 1.09344 1.34868 0.85801 0.79628 0.79556 0.79026 1.19524 1.20039 1.18740 1.21308 0.85090 0.97096 1.19371 0.92725 0.92719 0.92796 0.91903 0.91903 0.91572 0.91566 0.90944 0.90936 0.91094 0.91101 0.75004 0.75581 0.80557 0.91353 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.13 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.69 5.21 -26.73 -0.14 -0.83 16 4 C -0.13 -0.90 5.33 -26.73 -0.14 -1.04 16 5 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 6 N -0.71 -8.34 5.55 -60.78 -0.34 -8.68 16 7 C 0.51 7.88 7.88 -11.65 -0.09 7.79 16 8 O -0.53 -8.89 16.47 5.48 0.09 -8.80 16 9 C 0.48 8.82 7.85 -11.65 -0.09 8.72 16 10 O -0.52 -10.61 13.62 5.45 0.07 -10.54 16 11 N -0.58 -11.12 5.45 -10.45 -0.06 -11.18 16 12 C -0.07 -1.63 6.90 -83.92 -0.58 -2.20 16 13 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 14 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 15 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 16 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 17 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 19 N -0.77 -21.18 11.81 55.50 0.66 -20.53 16 20 Si 0.94 18.70 29.55 -169.99 -5.02 13.68 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.41 4.48 7.94 -40.82 -0.32 4.15 16 37 H 0.41 6.73 8.29 -40.82 -0.34 6.40 16 38 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 39 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -32.37 346.60 -6.17 -38.53 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.59 Total: 11.46 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.48 Total: 1.81 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.54 Total: -51.37 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.16 Total: -19.34 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.37 -6.17 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746344140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.144 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds