Wall clock time and date at job start Tue Mar 31 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47012 * 2 1 4 4 C 1.34776 * 120.00193 * 274.86805 * 3 2 1 5 5 O 1.21737 * 120.00219 * 185.53295 * 4 3 2 6 6 C 1.46374 * 119.99508 * 5.53916 * 4 3 2 7 7 C 1.36715 * 126.83029 * 5.81776 * 6 4 3 8 8 N 1.33222 * 107.96721 * 179.89597 * 7 6 4 9 9 C 1.31537 * 109.75992 * 0.37284 * 8 7 6 10 10 O 1.35212 * 125.49611 * 179.78551 * 9 8 7 11 11 N 1.34947 * 109.01321 * 359.77052 * 9 8 7 12 12 C 1.46501 * 126.54264 * 179.97438 * 11 9 8 13 13 C 1.46507 * 120.00078 * 94.87563 * 3 2 1 14 14 C 1.53489 * 114.21090 * 119.99648 * 13 3 2 15 15 N 1.47069 * 87.98352 * 87.51736 * 14 13 3 16 16 C 1.36939 * 136.05753 * 207.08471 * 15 14 13 17 17 H 1.08002 * 119.99537 * 355.05661 * 16 15 14 18 18 C 1.38810 * 119.99982 * 175.06057 * 16 15 14 19 19 N 1.31618 * 119.99826 * 184.88553 * 18 16 15 20 20 Si 1.86797 * 119.99973 * 4.88769 * 18 16 15 21 21 H 1.48500 * 109.46897 * 174.81481 * 20 18 16 22 22 H 1.48503 * 109.47163 * 294.81710 * 20 18 16 23 23 H 1.48497 * 109.47100 * 54.81838 * 20 18 16 24 24 C 1.47063 * 87.88502 * 27.34627 * 15 14 13 25 25 H 1.08992 * 109.47419 * 304.82663 * 1 2 3 26 26 H 1.09003 * 109.46804 * 64.82662 * 1 2 3 27 27 H 1.09000 * 109.47328 * 184.82245 * 1 2 3 28 28 H 1.08995 * 109.47437 * 239.99741 * 2 1 3 29 29 H 1.09005 * 109.46858 * 119.99611 * 2 1 3 30 30 H 1.07998 * 126.01769 * 0.02562 * 7 6 4 31 31 H 0.96702 * 113.99753 * 269.98435 * 10 9 8 32 32 H 1.09004 * 109.46644 * 274.99028 * 12 11 9 33 33 H 1.08999 * 109.47312 * 34.99112 * 12 11 9 34 34 H 1.09002 * 109.46864 * 154.99587 * 12 11 9 35 35 H 1.09005 * 113.28049 * 346.92480 * 13 3 2 36 36 H 1.09004 * 113.46390 * 332.73975 * 14 13 3 37 37 H 1.08990 * 113.47024 * 202.29851 * 14 13 3 38 38 H 0.97001 * 120.00131 * 5.00591 * 19 18 16 39 39 H 1.08998 * 113.47114 * 87.43381 * 24 15 14 40 40 H 1.08997 * 113.46786 * 217.87953 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1496 2.0496 -1.1630 5 8 2.6492 3.1597 -1.1740 6 6 1.6912 1.4408 -2.4127 7 6 1.0151 0.2604 -2.5495 8 7 0.7834 0.0676 -3.8472 9 6 1.2867 1.0647 -4.5418 10 8 1.2360 1.1888 -5.8872 11 7 1.8617 1.9442 -3.6950 12 6 2.5374 3.1919 -4.0596 13 6 2.3642 2.0359 1.2642 14 6 3.8256 2.4959 1.3556 15 7 3.4136 3.7580 0.7228 16 6 4.0131 4.7132 -0.0539 17 1 5.0707 4.6524 -0.2645 18 6 3.2616 5.7598 -0.5705 19 7 3.8156 6.6237 -1.3945 20 14 1.4641 5.9420 -0.0960 21 1 0.9241 7.1980 -0.6757 22 1 0.6944 4.7845 -0.6187 23 1 1.3449 5.9883 1.3834 24 6 2.0764 3.5460 1.2968 25 1 -0.3634 0.5868 0.8435 26 1 -0.3633 0.4371 -0.9301 27 1 -0.3634 -1.0240 0.0864 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.7190 -0.3987 -1.7468 31 1 1.9873 0.7904 -6.3475 32 1 3.5758 2.9813 -4.3157 33 1 2.0354 3.6399 -4.9171 34 1 2.5039 3.8828 -3.2171 35 1 2.0106 1.4935 2.1411 36 1 4.5059 1.9047 0.7425 37 1 4.1788 2.6187 2.3794 38 1 4.7270 6.4887 -1.6980 39 1 1.9684 3.9455 2.3052 40 1 1.2663 3.8493 0.6337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951137484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:20 Heat of formation + Delta-G solvation = 142.635148 kcal Electronic energy + Delta-G solvation = -25855.163966 eV Core-core repulsion = 22291.915397 eV Total energy + Delta-G solvation = -3563.248569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14462 -39.99730 -37.50875 -36.54460 -35.83514 -33.64705 -32.19750 -30.33677 -29.13356 -27.43199 -26.75165 -25.29142 -23.85821 -22.95031 -22.04464 -21.47300 -19.87019 -18.54247 -18.13189 -17.30401 -16.75318 -16.66335 -16.00794 -15.48434 -14.72087 -14.63097 -14.43599 -14.14754 -14.06308 -13.56906 -13.22802 -12.98645 -12.63494 -12.45040 -12.34253 -12.16845 -11.98189 -11.58318 -11.51161 -11.18497 -11.13936 -10.84382 -10.44876 -10.22437 -10.01960 -9.58367 -9.21998 -9.08288 -8.83406 -8.39073 -8.17713 -8.03927 -6.68247 -6.02972 -2.88026 1.51722 2.39165 2.81308 3.38367 3.52364 3.57710 3.73153 3.92836 3.93443 4.70389 4.82357 4.91997 4.96224 5.02932 5.05404 5.17417 5.34642 5.43892 5.47850 5.50519 5.59035 5.67595 5.81441 5.85572 5.97075 6.05321 6.23040 6.26144 6.30325 6.35211 6.46295 6.53537 6.54889 6.68881 7.23512 7.32172 7.59207 7.85246 7.94180 8.44546 8.95241 9.22930 9.80716 10.63723 11.49946 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.008227 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.702789 B = 3402.666136 C = 4565.628774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.092 3.908 3 N -0.589 5.589 4 C 0.541 3.459 5 O -0.413 6.413 6 C -0.054 4.054 7 C -0.005 4.005 8 N -0.493 5.493 9 C 0.374 3.626 10 O -0.442 6.442 11 N -0.421 5.421 12 C 0.060 3.940 13 C 0.108 3.892 14 C 0.107 3.893 15 N -0.598 5.598 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.018 4.018 19 N -0.954 5.954 20 Si 1.079 2.921 21 H -0.308 1.308 22 H -0.296 1.296 23 H -0.299 1.299 24 C 0.084 3.916 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.212 0.788 31 H 0.399 0.601 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 -15.935 -0.204 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.031 4.031 3 N -0.325 5.325 4 C 0.326 3.674 5 O -0.280 6.280 6 C -0.172 4.172 7 C -0.157 4.157 8 N -0.222 5.222 9 C 0.075 3.925 10 O -0.242 6.242 11 N -0.113 5.113 12 C -0.082 4.082 13 C 0.003 3.997 14 C -0.022 4.022 15 N -0.326 5.326 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.214 4.214 19 N -0.599 5.599 20 Si 0.916 3.084 21 H -0.236 1.236 22 H -0.225 1.225 23 H -0.227 1.227 24 C -0.042 4.042 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.228 0.772 31 H 0.255 0.745 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.615 -14.288 -1.004 15.778 hybrid contribution 2.159 -0.627 0.207 2.257 sum -4.457 -14.915 -0.798 15.587 Atomic orbital electron populations 1.22625 0.96303 1.02507 1.03815 1.21999 0.94157 0.83389 1.03573 1.47052 1.67347 1.13056 1.05034 1.17147 0.81260 0.87257 0.81735 1.91560 1.36289 1.15810 1.84336 1.21097 1.11357 0.98521 0.86187 1.24020 1.01089 0.96673 0.93909 1.70270 1.24004 1.23060 1.04854 1.20223 0.99854 0.88651 0.83740 1.84804 1.48961 1.80059 1.10392 1.45686 1.40237 1.19392 1.05989 1.22433 0.96763 0.83979 1.04997 1.22686 0.98143 0.94390 0.84462 1.22749 0.94129 0.88954 0.96350 1.45710 1.07361 1.23555 1.55967 1.19783 0.92962 1.01841 1.22508 0.91050 1.25254 1.04388 0.94133 0.97634 1.70943 1.15787 1.38007 1.35175 0.83595 0.76771 0.73315 0.74710 1.23625 1.22519 1.22721 1.23117 0.92265 0.91639 0.97190 0.91598 0.90879 0.91233 0.89354 0.90094 0.77194 0.74458 0.90409 0.89784 0.85671 0.88721 0.94023 0.94023 0.93706 0.93697 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.83 37.16 0.33 -1.59 16 2 C 0.09 1.01 5.63 -4.04 -0.02 0.99 16 3 N -0.59 -9.44 2.75 -167.37 -0.46 -9.90 16 4 C 0.54 10.65 7.10 -12.99 -0.09 10.56 16 5 O -0.41 -9.92 6.50 5.16 0.03 -9.88 16 6 C -0.05 -0.95 6.76 -81.98 -0.55 -1.51 16 7 C 0.00 -0.07 8.16 -17.50 -0.14 -0.21 16 8 N -0.49 -8.05 11.22 -14.62 -0.16 -8.22 16 9 C 0.37 5.98 9.01 -89.59 -0.81 5.17 16 10 O -0.44 -5.66 13.53 -17.33 -0.23 -5.90 16 11 N -0.42 -7.32 3.20 -122.12 -0.39 -7.71 16 12 C 0.06 1.02 10.83 59.85 0.65 1.67 16 13 C 0.11 1.79 4.86 -67.68 -0.33 1.46 16 14 C 0.11 2.05 8.21 -8.51 -0.07 1.98 16 15 N -0.60 -14.63 2.07 -184.64 -0.38 -15.01 16 16 C -0.24 -7.08 9.09 -15.06 -0.14 -7.22 16 17 H 0.07 2.23 8.06 -52.49 -0.42 1.80 16 18 C -0.02 -0.54 4.95 -17.43 -0.09 -0.63 16 19 N -0.95 -30.51 13.70 55.49 0.76 -29.75 16 20 Si 1.08 28.82 24.00 -169.99 -4.08 24.74 16 21 H -0.31 -8.47 7.11 56.52 0.40 -8.07 16 22 H -0.30 -7.68 6.02 56.52 0.34 -7.34 16 23 H -0.30 -7.55 6.77 56.52 0.38 -7.17 16 24 C 0.08 1.79 4.99 -8.37 -0.04 1.75 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.87 5.61 -51.93 -0.29 0.58 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.94 5.11 -51.93 -0.27 0.68 16 29 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 30 H 0.21 2.52 3.00 -52.49 -0.16 2.36 16 31 H 0.40 2.90 9.06 45.56 0.41 3.31 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.12 2.71 6.15 -51.93 -0.32 2.39 16 35 H 0.10 1.17 8.08 -51.93 -0.42 0.76 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.25 8.06 8.73 -40.82 -0.36 7.70 16 39 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.06 1.38 3.48 -51.93 -0.18 1.19 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -37.10 307.56 -5.84 -42.94 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.25 Total: 1.63 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -1.31 Total: 12.42 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.64 Total: -70.59 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.20 Total: -15.78 kcal Atomic # 14 Polarization: 28.82 SS G_CDS: -4.08 Total: 24.74 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.10 -5.84 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951137484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.579 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds