Wall clock time and date at job start Tue Mar 31 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47012 * 2 1 4 4 C 1.34776 * 120.00193 * 274.86805 * 3 2 1 5 5 O 1.21737 * 120.00219 * 185.53295 * 4 3 2 6 6 C 1.46374 * 119.99508 * 5.53916 * 4 3 2 7 7 C 1.36715 * 126.83029 * 5.81776 * 6 4 3 8 8 N 1.33222 * 107.96721 * 179.89597 * 7 6 4 9 9 C 1.31537 * 109.75992 * 0.37284 * 8 7 6 10 10 O 1.35212 * 125.49611 * 179.78551 * 9 8 7 11 11 N 1.34947 * 109.01321 * 359.77052 * 9 8 7 12 12 C 1.46501 * 126.54264 * 179.97438 * 11 9 8 13 13 C 1.46507 * 120.00078 * 94.87563 * 3 2 1 14 14 C 1.53489 * 114.21090 * 119.99648 * 13 3 2 15 15 N 1.47069 * 87.98352 * 87.51736 * 14 13 3 16 16 C 1.36939 * 136.05753 * 207.08471 * 15 14 13 17 17 H 1.08002 * 119.99537 * 355.05661 * 16 15 14 18 18 C 1.38810 * 119.99982 * 175.06057 * 16 15 14 19 19 N 1.31618 * 119.99826 * 184.88553 * 18 16 15 20 20 Si 1.86797 * 119.99973 * 4.88769 * 18 16 15 21 21 H 1.48500 * 109.46897 * 174.81481 * 20 18 16 22 22 H 1.48503 * 109.47163 * 294.81710 * 20 18 16 23 23 H 1.48497 * 109.47100 * 54.81838 * 20 18 16 24 24 C 1.47063 * 87.88502 * 27.34627 * 15 14 13 25 25 H 1.08992 * 109.47419 * 304.82663 * 1 2 3 26 26 H 1.09003 * 109.46804 * 64.82662 * 1 2 3 27 27 H 1.09000 * 109.47328 * 184.82245 * 1 2 3 28 28 H 1.08995 * 109.47437 * 239.99741 * 2 1 3 29 29 H 1.09005 * 109.46858 * 119.99611 * 2 1 3 30 30 H 1.07998 * 126.01769 * 0.02562 * 7 6 4 31 31 H 0.96702 * 113.99753 * 269.98435 * 10 9 8 32 32 H 1.09004 * 109.46644 * 274.99028 * 12 11 9 33 33 H 1.08999 * 109.47312 * 34.99112 * 12 11 9 34 34 H 1.09002 * 109.46864 * 154.99587 * 12 11 9 35 35 H 1.09005 * 113.28049 * 346.92480 * 13 3 2 36 36 H 1.09004 * 113.46390 * 332.73975 * 14 13 3 37 37 H 1.08990 * 113.47024 * 202.29851 * 14 13 3 38 38 H 0.97001 * 120.00131 * 5.00591 * 19 18 16 39 39 H 1.08998 * 113.47114 * 87.43381 * 24 15 14 40 40 H 1.08997 * 113.46786 * 217.87953 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1496 2.0496 -1.1630 5 8 2.6492 3.1597 -1.1740 6 6 1.6912 1.4408 -2.4127 7 6 1.0151 0.2604 -2.5495 8 7 0.7834 0.0676 -3.8472 9 6 1.2867 1.0647 -4.5418 10 8 1.2360 1.1888 -5.8872 11 7 1.8617 1.9442 -3.6950 12 6 2.5374 3.1919 -4.0596 13 6 2.3642 2.0359 1.2642 14 6 3.8256 2.4959 1.3556 15 7 3.4136 3.7580 0.7228 16 6 4.0131 4.7132 -0.0539 17 1 5.0707 4.6524 -0.2645 18 6 3.2616 5.7598 -0.5705 19 7 3.8156 6.6237 -1.3945 20 14 1.4641 5.9420 -0.0960 21 1 0.9241 7.1980 -0.6757 22 1 0.6944 4.7845 -0.6187 23 1 1.3449 5.9883 1.3834 24 6 2.0764 3.5460 1.2968 25 1 -0.3634 0.5868 0.8435 26 1 -0.3633 0.4371 -0.9301 27 1 -0.3634 -1.0240 0.0864 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.7190 -0.3987 -1.7468 31 1 1.9873 0.7904 -6.3475 32 1 3.5758 2.9813 -4.3157 33 1 2.0354 3.6399 -4.9171 34 1 2.5039 3.8828 -3.2171 35 1 2.0106 1.4935 2.1411 36 1 4.5059 1.9047 0.7425 37 1 4.1788 2.6187 2.3794 38 1 4.7270 6.4887 -1.6980 39 1 1.9684 3.9455 2.3052 40 1 1.2663 3.8493 0.6337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951137484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:20 Heat of formation + Delta-G solvation = 110.717049 kcal Electronic energy + Delta-G solvation = -25856.548039 eV Core-core repulsion = 22291.915397 eV Total energy + Delta-G solvation = -3564.632642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.39574 -41.43344 -38.73012 -37.98065 -37.05617 -34.96388 -34.30513 -31.59165 -30.41143 -29.22238 -28.07391 -26.90764 -25.31010 -24.08320 -23.39645 -22.79696 -21.44763 -19.93606 -19.54840 -19.12590 -18.04717 -17.84390 -17.33748 -17.00168 -16.16529 -16.07587 -15.86119 -15.57467 -15.50081 -15.22897 -15.08278 -14.37643 -13.88118 -13.79412 -13.57985 -13.30354 -13.12944 -12.99182 -12.91539 -12.60763 -12.44430 -12.36997 -12.08523 -11.92932 -11.30264 -11.11070 -10.98217 -10.92635 -10.81977 -10.23780 -9.49500 -9.36834 -8.64924 -8.36070 -5.09638 0.24685 1.16740 1.34263 1.47874 1.59018 1.67246 2.17393 2.47563 2.67751 2.79593 3.22164 3.46205 3.55137 3.70237 3.78357 3.94644 4.10883 4.15378 4.25924 4.40854 4.45755 4.52889 4.60752 4.66096 4.72790 4.77447 4.86996 4.93448 4.99585 5.09233 5.16449 5.35108 5.41667 5.50997 5.54934 5.95115 6.17832 6.52970 6.58592 6.70347 6.94040 7.56164 7.65582 8.55599 9.20048 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.008227 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.702789 B = 3402.666136 C = 4565.628774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 N -0.586 5.586 4 C 0.534 3.466 5 O -0.473 6.473 6 C -0.093 4.093 7 C 0.025 3.975 8 N -0.508 5.508 9 C 0.385 3.615 10 O -0.443 6.443 11 N -0.434 5.434 12 C 0.072 3.928 13 C 0.137 3.863 14 C 0.104 3.896 15 N -0.630 5.630 16 C -0.209 4.209 17 H 0.031 0.969 18 C -0.075 4.075 19 N -0.995 5.995 20 Si 1.124 2.876 21 H -0.328 1.328 22 H -0.292 1.292 23 H -0.275 1.275 24 C 0.073 3.927 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.244 0.756 31 H 0.425 0.575 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.236 0.764 39 H 0.065 0.935 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 -19.835 1.542 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.035 4.035 3 N -0.321 5.321 4 C 0.320 3.680 5 O -0.345 6.345 6 C -0.209 4.209 7 C -0.127 4.127 8 N -0.237 5.237 9 C 0.086 3.914 10 O -0.247 6.247 11 N -0.127 5.127 12 C -0.070 4.070 13 C 0.033 3.967 14 C -0.023 4.023 15 N -0.358 5.358 16 C -0.337 4.337 17 H 0.049 0.951 18 C -0.264 4.264 19 N -0.645 5.645 20 Si 0.958 3.042 21 H -0.258 1.258 22 H -0.221 1.221 23 H -0.201 1.201 24 C -0.053 4.053 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.259 0.741 31 H 0.286 0.714 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.177 0.823 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.517 -18.312 0.799 20.212 hybrid contribution 2.793 0.367 -0.386 2.843 sum -5.724 -17.946 0.413 18.841 Atomic orbital electron populations 1.22576 0.95117 1.04568 1.02547 1.22359 0.94982 0.80497 1.05687 1.47257 1.66240 1.14761 1.03802 1.17550 0.80462 0.86760 0.83220 1.91518 1.39260 1.18280 1.85428 1.21103 1.13912 1.00009 0.85870 1.24562 0.98424 0.95523 0.94214 1.70373 1.24738 1.23285 1.05336 1.20454 0.98311 0.87932 0.84682 1.84758 1.50546 1.80463 1.08902 1.45790 1.40841 1.19513 1.06541 1.22180 0.97775 0.83601 1.03455 1.22575 0.95245 0.92366 0.86552 1.23021 0.96157 0.86407 0.96674 1.45717 1.09511 1.24259 1.56283 1.19469 0.91028 1.01903 1.21267 0.95145 1.26159 1.07083 0.94918 0.98232 1.71030 1.15105 1.40182 1.38208 0.82999 0.73493 0.72109 0.75600 1.25831 1.22117 1.20130 1.23346 0.89575 0.95413 0.96932 0.91487 0.93316 0.87652 0.89090 0.86156 0.74057 0.71417 0.89606 0.87893 0.90480 0.82339 0.95259 0.91289 0.95548 0.91790 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 8.83 71.98 0.64 -2.15 16 2 C 0.09 1.44 5.63 86.38 0.49 1.92 16 3 N -0.59 -16.90 2.75 -801.64 -2.21 -19.11 16 4 C 0.53 20.71 7.10 86.36 0.61 21.33 16 5 O -0.47 -23.38 6.50 -4.47 -0.03 -23.41 16 6 C -0.09 -3.21 6.76 39.80 0.27 -2.95 16 7 C 0.03 0.70 8.16 84.13 0.69 1.39 16 8 N -0.51 -15.41 11.22 -313.65 -3.52 -18.93 16 9 C 0.39 11.73 9.01 179.99 1.62 13.35 16 10 O -0.44 -10.47 13.53 -84.93 -1.15 -11.62 16 11 N -0.43 -15.06 3.20 -651.98 -2.09 -17.15 16 12 C 0.07 2.57 10.83 127.77 1.38 3.96 16 13 C 0.14 3.95 4.86 45.55 0.22 4.17 16 14 C 0.10 3.76 8.21 83.17 0.68 4.44 16 15 N -0.63 -30.67 2.07 -738.07 -1.53 -32.20 16 16 C -0.21 -12.60 9.09 84.03 0.76 -11.83 16 17 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 18 C -0.07 -4.70 4.95 84.86 0.42 -4.28 16 19 N -0.99 -67.74 13.70 21.65 0.30 -67.44 16 20 Si 1.12 60.81 24.00 68.60 1.65 62.46 16 21 H -0.33 -18.53 7.11 99.48 0.71 -17.82 16 22 H -0.29 -15.37 6.02 99.48 0.60 -14.77 16 23 H -0.27 -13.43 6.77 99.48 0.67 -12.76 16 24 C 0.07 2.92 4.99 83.27 0.42 3.34 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.98 5.61 -2.39 -0.01 0.97 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.52 5.11 -2.39 -0.01 1.51 16 29 H 0.12 1.18 8.02 -2.38 -0.02 1.16 16 30 H 0.24 4.83 3.00 -2.91 -0.01 4.82 16 31 H 0.42 5.17 9.06 -74.06 -0.67 4.50 16 32 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.10 3.14 8.14 -2.39 -0.02 3.13 16 34 H 0.08 3.61 6.15 -2.39 -0.01 3.60 16 35 H 0.16 2.72 8.08 -2.38 -0.02 2.70 16 36 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.24 16.20 8.73 -92.71 -0.81 15.39 16 39 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.04 1.63 3.48 -2.39 -0.01 1.62 16 Total: -1.00 -88.35 307.56 -0.14 -88.48 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.24 Total: 6.23 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 8.20 Total: 32.69 kcal Atomic # 7 Polarization: -145.78 SS G_CDS: -9.05 Total: -154.83 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.18 Total: -35.03 kcal Atomic # 14 Polarization: 60.81 SS G_CDS: 1.65 Total: 62.46 kcal Total: -88.35 -0.14 -88.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951137484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.199 kcal (2) G-P(sol) polarization free energy of solvation -88.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds