Wall clock time and date at job start Tue Mar 31 2020 04:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34263 * 125.75265 * 2 1 4 4 C 1.38043 * 107.41356 * 180.11107 * 3 2 1 5 5 C 1.47431 * 126.40976 * 179.86986 * 4 3 2 6 6 O 1.21599 * 120.00560 * 359.71063 * 5 4 3 7 7 N 1.34779 * 119.99575 * 179.71237 * 5 4 3 8 8 C 1.46506 * 119.99895 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.46858 * 180.02562 * 8 7 5 10 10 H 1.08996 * 110.64067 * 303.30523 * 9 8 7 11 11 C 1.54320 * 110.72234 * 66.45360 * 9 8 7 12 12 N 1.47029 * 107.27322 * 140.73520 * 11 9 8 13 13 C 1.36933 * 125.64936 * 181.02206 * 12 11 9 14 14 H 1.08003 * 119.99721 * 13.63215 * 13 12 11 15 15 C 1.38816 * 119.99961 * 193.62770 * 13 12 11 16 16 N 1.31616 * 119.99775 * 27.26821 * 15 13 12 17 17 Si 1.86796 * 119.99890 * 207.26642 * 15 13 12 18 18 H 1.48502 * 109.47389 * 60.00434 * 17 15 13 19 19 H 1.48499 * 109.47223 * 300.00034 * 17 15 13 20 20 H 1.48500 * 109.47095 * 180.02562 * 17 15 13 21 21 C 1.47425 * 108.70123 * 1.28326 * 12 11 9 22 22 C 1.55140 * 104.72236 * 335.55406 * 21 12 11 23 23 H 1.08998 * 111.19212 * 279.19468 * 22 21 12 24 24 O 1.42894 * 110.93636 * 155.28796 * 22 21 12 25 25 C 1.41286 * 107.16999 * 359.60689 * 4 3 2 26 26 N 1.30445 * 108.02358 * 0.24122 * 25 4 3 27 27 H 1.08998 * 109.47139 * 270.31107 * 1 2 3 28 28 H 1.08999 * 109.46883 * 30.30751 * 1 2 3 29 29 H 1.09000 * 109.46859 * 150.31258 * 1 2 3 30 30 H 1.08000 * 126.29487 * 359.95670 * 3 2 1 31 31 H 0.96998 * 120.00190 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47451 * 59.99349 * 8 7 5 33 33 H 1.09004 * 109.46573 * 299.99734 * 8 7 5 34 34 H 1.08996 * 109.88396 * 21.31395 * 11 9 8 35 35 H 1.09003 * 110.01118 * 260.21543 * 11 9 8 36 36 H 0.97006 * 120.00147 * 5.85176 * 16 15 13 37 37 H 1.08995 * 110.36729 * 94.48746 * 21 12 11 38 38 H 1.08999 * 110.36759 * 216.81246 * 21 12 11 39 39 H 0.96701 * 114.00090 * 67.96154 * 24 22 21 40 40 H 1.08003 * 125.98364 * 180.24420 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0026 5 6 4.7638 1.5062 -0.0062 6 8 4.6526 2.7171 -0.0125 7 7 5.9877 0.9419 -0.0025 8 6 7.1842 1.7874 -0.0056 9 6 8.4331 0.9037 -0.0011 10 1 8.4228 0.2283 0.8544 11 6 8.5465 0.1118 -1.3208 12 7 9.9678 0.0910 -1.6966 13 6 10.4880 -0.4965 -2.8188 14 1 9.8328 -0.8034 -3.6207 15 6 11.8574 -0.6975 -2.9258 16 7 12.5875 -0.8454 -1.8407 17 14 12.6637 -0.7581 -4.6096 18 1 12.4339 0.5283 -5.3152 19 1 12.0753 -1.8686 -5.4006 20 1 14.1231 -0.9826 -4.4518 21 6 10.7408 0.8018 -0.6620 22 6 9.7218 1.7679 -0.0025 23 1 9.5876 2.6683 -0.6020 24 8 10.1190 2.0974 1.3299 25 6 3.5310 -0.7573 0.0052 26 7 2.2826 -1.1355 0.0066 27 1 -0.3633 0.0056 1.0276 28 1 -0.3633 0.8872 -0.5186 29 1 -0.3633 -0.8928 -0.5090 30 1 1.9166 2.1170 -0.0007 31 1 6.0765 -0.0240 0.0028 32 1 7.1837 2.4210 0.8813 33 1 7.1850 2.4124 -0.8986 34 1 7.9643 0.6041 -2.0996 35 1 8.1863 -0.9068 -1.1767 36 1 12.1596 -0.8991 -0.9718 37 1 11.1290 0.0967 0.0730 38 1 11.5562 1.3641 -1.1170 39 1 10.9200 2.6370 1.3795 40 1 4.3918 -1.4095 0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957855728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:32 Heat of formation + Delta-G solvation = 18.333447 kcal Electronic energy + Delta-G solvation = -23210.115419 eV Core-core repulsion = 19641.476724 eV Total energy + Delta-G solvation = -3568.638696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57480 -39.34146 -38.25524 -35.32111 -34.75229 -33.74373 -32.33262 -30.67663 -29.59365 -27.90566 -27.29947 -25.31700 -23.79712 -22.47629 -21.24629 -20.66770 -20.06197 -19.77452 -18.13506 -17.59106 -16.97676 -15.98562 -15.96950 -15.70137 -15.14864 -14.83782 -14.58483 -14.29479 -13.79432 -13.60999 -13.54057 -13.20874 -13.18727 -12.95920 -12.80237 -12.42701 -12.18638 -11.94303 -11.34568 -11.10795 -10.89607 -10.72413 -10.53952 -10.14025 -10.03119 -9.88232 -9.81012 -9.71622 -9.32907 -9.09339 -8.77240 -8.46063 -7.01475 -6.13121 -3.17116 1.31867 1.98202 2.04500 3.30927 3.46208 3.48819 3.52802 3.70612 4.13720 4.43298 4.47992 4.61327 4.66955 4.70073 4.90885 4.95787 5.01246 5.11326 5.19663 5.27381 5.38163 5.49430 5.59195 5.75002 5.82564 5.94531 6.09072 6.15234 6.23941 6.46065 6.49592 6.55827 6.69039 6.83883 6.93055 7.24646 7.62664 7.70867 7.98488 8.33613 8.43655 8.97101 9.77163 10.29365 11.20058 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.003199 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.905581 B = 8751.709535 C = 9622.887526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 C 0.126 3.874 4 C -0.290 4.290 5 C 0.594 3.406 6 O -0.555 6.555 7 N -0.720 5.720 8 C 0.137 3.863 9 C -0.105 4.105 10 H 0.088 0.912 11 C 0.141 3.859 12 N -0.601 5.601 13 C -0.338 4.338 14 H 0.069 0.931 15 C -0.026 4.026 16 N -0.919 5.919 17 Si 1.065 2.935 18 H -0.293 1.293 19 H -0.293 1.293 20 H -0.285 1.285 21 C 0.120 3.880 22 C 0.091 3.909 23 H 0.066 0.934 24 O -0.565 6.565 25 C 0.084 3.916 26 N -0.298 5.298 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.188 0.812 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.269 0.731 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.377 0.623 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.395 3.890 5.652 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 C -0.025 4.025 4 C -0.305 4.305 5 C 0.381 3.619 6 O -0.434 6.434 7 N -0.371 5.371 8 C 0.013 3.987 9 C -0.124 4.124 10 H 0.106 0.894 11 C 0.016 3.984 12 N -0.329 5.329 13 C -0.465 4.465 14 H 0.086 0.914 15 C -0.227 4.227 16 N -0.561 5.561 17 Si 0.894 3.106 18 H -0.221 1.221 19 H -0.220 1.220 20 H -0.211 1.211 21 C -0.007 4.007 22 C 0.030 3.970 23 H 0.084 0.916 24 O -0.370 6.370 25 C -0.104 4.104 26 N -0.118 5.118 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.205 0.795 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.224 0.776 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -20.475 3.228 4.907 21.301 hybrid contribution -0.441 0.488 0.605 0.894 sum -20.916 3.716 5.512 21.947 Atomic orbital electron populations 1.21987 0.73493 1.05021 1.03871 1.48433 1.07250 1.03912 1.55004 1.22967 0.90111 0.93710 0.95749 1.20307 0.93568 0.93569 1.23096 1.17190 0.82196 0.86838 0.75630 1.90758 1.86964 1.14196 1.51528 1.45768 1.05386 1.10573 1.75351 1.21358 0.82158 0.92786 1.02382 1.22401 0.92590 0.97432 0.99963 0.89378 1.21392 0.88346 0.96598 0.92096 1.44394 1.00853 1.63407 1.24283 1.19772 0.93770 1.39793 0.93202 0.91363 1.25751 0.93330 0.98698 1.04927 1.70797 1.39019 1.46802 0.99471 0.83527 0.76276 0.76182 0.74599 1.22080 1.21978 1.21052 1.22215 0.93750 0.93136 0.91567 1.23099 0.94520 0.96622 0.82723 0.91592 1.86413 1.48282 1.74998 1.27320 1.24137 0.95386 0.94001 0.96899 1.77195 1.01965 1.07729 1.24943 0.90236 0.89009 0.88826 0.79461 0.76544 0.91089 0.91230 0.94990 0.95567 0.91888 0.94676 0.92639 0.77560 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.44 59.85 0.68 1.11 16 2 N -0.37 -3.39 3.98 -67.60 -0.27 -3.65 16 3 C 0.13 1.25 11.30 -16.56 -0.19 1.06 16 4 C -0.29 -3.49 6.13 -105.07 -0.64 -4.13 16 5 C 0.59 8.56 7.81 -12.52 -0.10 8.46 16 6 O -0.56 -9.74 16.90 5.28 0.09 -9.65 16 7 N -0.72 -9.69 5.39 -61.38 -0.33 -10.02 16 8 C 0.14 2.07 5.01 -4.04 -0.02 2.05 16 9 C -0.10 -1.76 2.74 -88.79 -0.24 -2.01 16 10 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 11 C 0.14 2.83 6.52 -3.06 -0.02 2.81 16 12 N -0.60 -15.02 3.33 -169.93 -0.57 -15.58 16 13 C -0.34 -9.47 10.05 -15.06 -0.15 -9.62 16 14 H 0.07 1.90 7.96 -52.48 -0.42 1.48 16 15 C -0.03 -0.73 5.09 -17.43 -0.09 -0.82 16 16 N -0.92 -27.58 12.82 55.49 0.71 -26.87 16 17 Si 1.06 25.19 30.00 -169.99 -5.10 20.09 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.12 2.73 4.96 -2.40 -0.01 2.72 16 22 C 0.09 1.63 3.90 -24.45 -0.10 1.54 16 23 H 0.07 1.14 8.05 -51.93 -0.42 0.73 16 24 O -0.57 -9.20 13.47 -35.23 -0.47 -9.67 16 25 C 0.08 0.91 11.50 -16.98 -0.20 0.72 16 26 N -0.30 -3.43 12.50 30.86 0.39 -3.05 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.19 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.40 4.58 7.28 -40.82 -0.30 4.29 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.27 8.08 5.83 -40.82 -0.24 7.84 16 37 H 0.04 0.87 6.84 -51.93 -0.36 0.52 16 38 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 39 H 0.38 4.62 9.12 45.56 0.42 5.04 16 40 H 0.19 1.58 7.50 -52.48 -0.39 1.19 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -36.81 339.20 -6.19 -43.01 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.68 Total: 6.39 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.07 Total: 3.90 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.07 Total: -59.18 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.39 Total: -19.32 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.10 Total: 20.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.81 -6.19 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957855728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.341 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds