Wall clock time and date at job start Tue Mar 31 2020 04:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34263 * 125.75265 * 2 1 4 4 C 1.38043 * 107.41356 * 180.11107 * 3 2 1 5 5 C 1.47431 * 126.40976 * 179.86986 * 4 3 2 6 6 O 1.21599 * 120.00560 * 359.71063 * 5 4 3 7 7 N 1.34779 * 119.99575 * 179.71237 * 5 4 3 8 8 C 1.46506 * 119.99895 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.46858 * 180.02562 * 8 7 5 10 10 H 1.08996 * 110.64067 * 303.30523 * 9 8 7 11 11 C 1.54320 * 110.72234 * 66.45360 * 9 8 7 12 12 N 1.47029 * 107.27322 * 140.73520 * 11 9 8 13 13 C 1.36933 * 125.64936 * 181.02206 * 12 11 9 14 14 H 1.08003 * 119.99721 * 13.63215 * 13 12 11 15 15 C 1.38816 * 119.99961 * 193.62770 * 13 12 11 16 16 N 1.31616 * 119.99775 * 27.26821 * 15 13 12 17 17 Si 1.86796 * 119.99890 * 207.26642 * 15 13 12 18 18 H 1.48502 * 109.47389 * 60.00434 * 17 15 13 19 19 H 1.48499 * 109.47223 * 300.00034 * 17 15 13 20 20 H 1.48500 * 109.47095 * 180.02562 * 17 15 13 21 21 C 1.47425 * 108.70123 * 1.28326 * 12 11 9 22 22 C 1.55140 * 104.72236 * 335.55406 * 21 12 11 23 23 H 1.08998 * 111.19212 * 279.19468 * 22 21 12 24 24 O 1.42894 * 110.93636 * 155.28796 * 22 21 12 25 25 C 1.41286 * 107.16999 * 359.60689 * 4 3 2 26 26 N 1.30445 * 108.02358 * 0.24122 * 25 4 3 27 27 H 1.08998 * 109.47139 * 270.31107 * 1 2 3 28 28 H 1.08999 * 109.46883 * 30.30751 * 1 2 3 29 29 H 1.09000 * 109.46859 * 150.31258 * 1 2 3 30 30 H 1.08000 * 126.29487 * 359.95670 * 3 2 1 31 31 H 0.96998 * 120.00190 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47451 * 59.99349 * 8 7 5 33 33 H 1.09004 * 109.46573 * 299.99734 * 8 7 5 34 34 H 1.08996 * 109.88396 * 21.31395 * 11 9 8 35 35 H 1.09003 * 110.01118 * 260.21543 * 11 9 8 36 36 H 0.97006 * 120.00147 * 5.85176 * 16 15 13 37 37 H 1.08995 * 110.36729 * 94.48746 * 21 12 11 38 38 H 1.08999 * 110.36759 * 216.81246 * 21 12 11 39 39 H 0.96701 * 114.00090 * 67.96154 * 24 22 21 40 40 H 1.08003 * 125.98364 * 180.24420 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0026 5 6 4.7638 1.5062 -0.0062 6 8 4.6526 2.7171 -0.0125 7 7 5.9877 0.9419 -0.0025 8 6 7.1842 1.7874 -0.0056 9 6 8.4331 0.9037 -0.0011 10 1 8.4228 0.2283 0.8544 11 6 8.5465 0.1118 -1.3208 12 7 9.9678 0.0910 -1.6966 13 6 10.4880 -0.4965 -2.8188 14 1 9.8328 -0.8034 -3.6207 15 6 11.8574 -0.6975 -2.9258 16 7 12.5875 -0.8454 -1.8407 17 14 12.6637 -0.7581 -4.6096 18 1 12.4339 0.5283 -5.3152 19 1 12.0753 -1.8686 -5.4006 20 1 14.1231 -0.9826 -4.4518 21 6 10.7408 0.8018 -0.6620 22 6 9.7218 1.7679 -0.0025 23 1 9.5876 2.6683 -0.6020 24 8 10.1190 2.0974 1.3299 25 6 3.5310 -0.7573 0.0052 26 7 2.2826 -1.1355 0.0066 27 1 -0.3633 0.0056 1.0276 28 1 -0.3633 0.8872 -0.5186 29 1 -0.3633 -0.8928 -0.5090 30 1 1.9166 2.1170 -0.0007 31 1 6.0765 -0.0240 0.0028 32 1 7.1837 2.4210 0.8813 33 1 7.1850 2.4124 -0.8986 34 1 7.9643 0.6041 -2.0996 35 1 8.1863 -0.9068 -1.1767 36 1 12.1596 -0.8991 -0.9718 37 1 11.1290 0.0967 0.0730 38 1 11.5562 1.3641 -1.1170 39 1 10.9200 2.6370 1.3795 40 1 4.3918 -1.4095 0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957855728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:32 Heat of formation + Delta-G solvation = -11.387833 kcal Electronic energy + Delta-G solvation = -23211.404231 eV Core-core repulsion = 19641.476724 eV Total energy + Delta-G solvation = -3569.927507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.36115 -40.61008 -39.68372 -36.82310 -36.17829 -34.50606 -33.98498 -31.74682 -30.99849 -29.52814 -28.11359 -26.90444 -25.33854 -23.55307 -22.32506 -21.98297 -21.47161 -20.93130 -19.65113 -19.01370 -18.36834 -16.95705 -16.92189 -16.71168 -16.35356 -16.28211 -15.70402 -15.59437 -15.47222 -15.32273 -14.72387 -14.45593 -14.03539 -13.92725 -13.83288 -13.62790 -13.45831 -13.44906 -12.75922 -12.61140 -12.39541 -12.29458 -12.14621 -11.89604 -11.69988 -11.57032 -11.03869 -10.87939 -10.60857 -10.54776 -10.18547 -9.66222 -9.06757 -8.34298 -5.34694 0.51943 1.12044 1.43583 1.58361 1.65967 1.84976 2.23620 2.45106 2.61924 3.03397 3.22026 3.47237 3.51836 3.63331 3.78161 3.79922 3.97740 4.08887 4.15145 4.29038 4.30203 4.42197 4.46782 4.55865 4.64861 4.69842 4.75739 4.84780 4.85791 4.98034 5.11287 5.20917 5.34033 5.43849 5.62822 5.86014 6.28422 6.45065 6.60495 6.78605 6.86908 7.25797 7.67281 8.23244 8.98624 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.003199 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.905581 B = 8751.709535 C = 9622.887526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.362 5.362 3 C 0.135 3.865 4 C -0.318 4.318 5 C 0.596 3.404 6 O -0.591 6.591 7 N -0.715 5.715 8 C 0.150 3.850 9 C -0.087 4.087 10 H 0.093 0.907 11 C 0.140 3.860 12 N -0.625 5.625 13 C -0.347 4.347 14 H 0.066 0.934 15 C -0.079 4.079 16 N -0.948 5.948 17 Si 1.116 2.884 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.292 1.292 21 C 0.124 3.876 22 C 0.108 3.892 23 H 0.079 0.921 24 O -0.565 6.565 25 C 0.083 3.917 26 N -0.326 5.326 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.211 0.789 31 H 0.410 0.590 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.256 0.744 37 H 0.011 0.989 38 H 0.027 0.973 39 H 0.396 0.604 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.393 4.375 5.499 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.140 5.140 3 C -0.018 4.018 4 C -0.333 4.333 5 C 0.385 3.615 6 O -0.473 6.473 7 N -0.366 5.366 8 C 0.026 3.974 9 C -0.106 4.106 10 H 0.111 0.889 11 C 0.016 3.984 12 N -0.353 5.353 13 C -0.475 4.475 14 H 0.083 0.917 15 C -0.274 4.274 16 N -0.591 5.591 17 Si 0.940 3.060 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.218 1.218 21 C -0.002 4.002 22 C 0.047 3.953 23 H 0.097 0.903 24 O -0.372 6.372 25 C -0.104 4.104 26 N -0.146 5.146 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.228 0.772 31 H 0.246 0.754 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.246 0.754 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.522 3.687 4.770 23.315 hybrid contribution 0.067 0.327 0.696 0.772 sum -22.455 4.014 5.466 23.457 Atomic orbital electron populations 1.22411 0.70834 1.06652 1.05429 1.48817 1.08699 1.03083 1.53395 1.23346 0.89654 0.94808 0.93976 1.20226 0.93459 0.93836 1.25809 1.17479 0.82785 0.86579 0.74648 1.90732 1.87453 1.15722 1.53437 1.45669 1.04835 1.10984 1.75095 1.21099 0.81833 0.92339 1.02134 1.22226 0.93001 0.97112 0.98289 0.88874 1.21516 0.85756 0.97420 0.93753 1.44662 1.03040 1.63420 1.24175 1.20056 0.94114 1.39158 0.94207 0.91657 1.27132 0.94354 0.98546 1.07389 1.70906 1.39213 1.49491 0.99526 0.82846 0.74923 0.77251 0.70989 1.20655 1.19986 1.21793 1.22121 0.94263 0.93165 0.90641 1.22820 0.93157 0.95969 0.83313 0.90340 1.86386 1.49518 1.75419 1.25876 1.24420 0.95914 0.93857 0.96219 1.77150 1.02407 1.09150 1.25886 0.88694 0.86228 0.88419 0.77212 0.75361 0.90858 0.91963 0.94635 0.95110 0.93277 0.97167 0.95449 0.75398 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.44 127.77 1.46 1.99 16 2 N -0.36 -5.89 3.98 -367.78 -1.46 -7.35 16 3 C 0.14 2.42 11.30 84.27 0.95 3.37 16 4 C -0.32 -7.20 6.13 -20.15 -0.12 -7.33 16 5 C 0.60 16.49 7.81 86.66 0.68 17.17 16 6 O -0.59 -20.21 16.90 -4.03 -0.07 -20.27 16 7 N -0.72 -18.26 5.39 -466.36 -2.51 -20.78 16 8 C 0.15 4.31 5.01 86.38 0.43 4.74 16 9 C -0.09 -2.83 2.74 -9.61 -0.03 -2.85 16 10 H 0.09 2.97 8.14 -2.39 -0.02 2.96 16 11 C 0.14 5.53 6.52 86.73 0.57 6.10 16 12 N -0.62 -31.50 3.33 -691.52 -2.30 -33.80 16 13 C -0.35 -19.62 10.05 84.03 0.84 -18.78 16 14 H 0.07 3.64 7.96 -2.91 -0.02 3.62 16 15 C -0.08 -4.51 5.09 84.86 0.43 -4.08 16 16 N -0.95 -58.27 12.82 21.65 0.28 -57.99 16 17 Si 1.12 51.01 30.00 68.60 2.06 53.07 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 C 0.12 5.79 4.96 86.94 0.43 6.22 16 22 C 0.11 3.79 3.90 32.07 0.12 3.92 16 23 H 0.08 2.60 8.05 -2.39 -0.02 2.58 16 24 O -0.56 -17.47 13.47 -148.98 -2.01 -19.48 16 25 C 0.08 1.71 11.50 85.65 0.99 2.69 16 26 N -0.33 -7.01 12.50 -56.28 -0.70 -7.71 16 27 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.41 8.79 7.28 -92.71 -0.68 8.11 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 34 H 0.04 1.39 7.77 -2.39 -0.02 1.37 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.26 15.97 5.83 -92.70 -0.54 15.43 16 37 H 0.01 0.54 6.84 -2.39 -0.02 0.52 16 38 H 0.03 1.40 7.73 -2.39 -0.02 1.38 16 39 H 0.40 9.07 9.12 -74.06 -0.68 8.39 16 40 H 0.21 3.16 7.50 -2.91 -0.02 3.14 16 Total: -1.00 -80.13 339.20 -0.01 -80.14 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.05 Total: 21.02 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.76 Total: 13.16 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.70 Total: -127.64 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -2.07 Total: -39.75 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.07 kcal Total: -80.13 -0.01 -80.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957855728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.750 kcal (2) G-P(sol) polarization free energy of solvation -80.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds