Wall clock time and date at job start Tue Mar 31 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28438 * 125.19676 * 2 1 4 4 C 1.30865 * 110.93294 * 179.97438 * 3 2 1 5 5 C 1.39672 * 107.85859 * 0.02562 * 4 3 2 6 6 C 1.36600 * 125.18632 * 179.97438 * 2 1 3 7 7 C 1.47160 * 126.88367 * 359.97438 * 6 2 1 8 8 O 1.21622 * 120.00259 * 5.73663 * 7 6 2 9 9 N 1.34784 * 119.99872 * 185.73289 * 7 6 2 10 10 C 1.46506 * 119.99929 * 185.14484 * 9 7 6 11 11 C 1.52997 * 109.47020 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.64178 * 56.69047 * 11 10 9 13 13 C 1.54323 * 110.72194 * 293.54619 * 11 10 9 14 14 N 1.47016 * 107.27465 * 219.44395 * 13 11 10 15 15 C 1.36929 * 125.65185 * 178.90627 * 14 13 11 16 16 H 1.08006 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00441 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99712 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00541 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47371 * 59.99653 * 19 17 15 21 21 H 1.48497 * 109.47407 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47295 * 299.99981 * 19 17 15 23 23 C 1.47425 * 108.70126 * 358.94002 * 14 13 11 24 24 C 1.54910 * 104.83416 * 24.12883 * 23 14 13 25 25 H 1.09000 * 111.00322 * 81.05944 * 24 23 14 26 26 O 1.42898 * 111.00976 * 204.91404 * 24 23 14 27 27 H 1.08997 * 109.47161 * 86.05643 * 1 2 3 28 28 H 1.08997 * 109.47760 * 206.06350 * 1 2 3 29 29 H 1.09005 * 109.46584 * 326.06119 * 1 2 3 30 30 H 1.07993 * 126.07175 * 179.73817 * 4 3 2 31 31 H 1.08002 * 127.32175 * 179.97438 * 5 4 3 32 32 H 0.96993 * 120.00034 * 5.14860 * 9 7 6 33 33 H 1.08999 * 109.47028 * 300.00661 * 10 9 7 34 34 H 1.09007 * 109.46876 * 59.99935 * 10 9 7 35 35 H 1.09002 * 109.88215 * 338.86310 * 13 11 10 36 36 H 1.09004 * 109.87966 * 100.02326 * 13 11 10 37 37 H 0.96998 * 119.99939 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.36830 * 142.96510 * 23 14 13 39 39 H 1.08998 * 110.37214 * 265.18180 * 23 14 13 40 40 H 0.96695 * 114.00093 * 292.20250 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4736 0.7271 0.0005 5 6 3.5612 -0.6668 0.0003 6 6 2.2521 -1.1164 0.0005 7 6 1.7991 -2.5165 0.0017 8 8 0.6147 -2.7726 -0.1030 9 7 2.6967 -3.5152 0.1186 10 6 2.2602 -4.9092 0.0068 11 6 3.4658 -5.8361 0.1754 12 1 3.9650 -5.6482 1.1259 13 6 4.4509 -5.6701 -1.0009 14 7 4.9520 -7.0092 -1.3429 15 6 5.8338 -7.2983 -2.3498 16 1 6.2209 -6.5055 -2.9728 17 6 6.2294 -8.6104 -2.5707 18 7 5.7572 -9.5767 -1.8119 19 14 7.4318 -9.0048 -3.9448 20 1 8.7067 -8.2804 -3.7101 21 1 7.6912 -10.4666 -3.9711 22 1 6.8537 -8.5807 -5.2453 23 6 4.3473 -7.9895 -0.4227 24 6 3.0356 -7.3225 0.0613 25 1 2.2409 -7.4438 -0.6748 26 8 2.6367 -7.8393 1.3324 27 1 -0.3633 0.0707 -1.0252 28 1 -0.3634 -0.9231 0.4515 29 1 -0.3633 0.8526 0.5738 30 1 4.3049 1.4164 -0.0033 31 1 4.4594 -1.2665 0.0003 32 1 3.6316 -3.3109 0.2769 33 1 1.5254 -5.1232 0.7829 34 1 1.8114 -5.0719 -0.9732 35 1 3.9351 -5.2372 -1.8581 36 1 5.2802 -5.0290 -0.7021 37 1 6.0340 -10.4935 -1.9660 38 1 4.1285 -8.9189 -0.9487 39 1 5.0119 -8.1789 0.4202 40 1 2.3594 -8.7654 1.3110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957919689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:43 Heat of formation + Delta-G solvation = 24.888328 kcal Electronic energy + Delta-G solvation = -23487.706272 eV Core-core repulsion = 19919.351817 eV Total energy + Delta-G solvation = -3568.354455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67479 -39.57712 -38.19854 -35.30125 -34.82172 -33.45341 -32.40415 -31.21171 -29.55354 -27.62083 -27.26052 -25.70689 -24.03220 -22.73877 -21.55158 -20.65033 -20.12669 -19.67984 -18.17330 -17.09057 -16.74118 -16.47292 -16.22319 -15.56947 -15.22449 -14.97774 -14.54717 -14.07254 -13.96872 -13.80425 -13.59550 -13.08658 -13.01763 -12.87760 -12.53727 -12.44819 -12.01467 -11.61605 -11.29221 -11.03738 -11.00907 -10.83388 -10.70344 -10.26299 -10.12374 -9.91807 -9.72430 -9.45943 -9.23198 -9.22049 -9.03067 -8.74322 -6.95646 -5.75204 -3.17996 1.10105 2.20682 2.43393 3.08107 3.14067 3.35609 3.40033 3.41151 4.33952 4.37028 4.46295 4.66592 4.89495 4.95775 4.98835 5.08426 5.17052 5.31841 5.39249 5.42678 5.44475 5.55780 5.61894 5.86139 5.95992 5.98755 6.13543 6.24826 6.30683 6.37242 6.50662 6.52418 6.74976 7.31028 7.33934 7.50041 7.70154 7.84491 8.01953 8.11251 8.24664 9.10747 9.71628 10.34377 11.28738 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003416 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.765926 B = 8194.313888 C = 9162.383298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.259 5.259 3 N -0.282 5.282 4 C -0.003 4.003 5 C -0.188 4.188 6 C -0.036 4.036 7 C 0.590 3.410 8 O -0.545 6.545 9 N -0.706 5.706 10 C 0.135 3.865 11 C -0.106 4.106 12 H 0.088 0.912 13 C 0.140 3.860 14 N -0.601 5.601 15 C -0.226 4.226 16 H 0.079 0.921 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.082 3.918 25 H 0.061 0.939 26 O -0.569 6.569 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.187 0.813 31 H 0.163 0.837 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.254 0.746 38 H 0.109 0.891 39 H 0.023 0.977 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 14.389 5.380 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.047 5.047 3 N -0.115 5.115 4 C -0.179 4.179 5 C -0.217 4.217 6 C -0.165 4.165 7 C 0.375 3.625 8 O -0.423 6.423 9 N -0.357 5.357 10 C 0.012 3.988 11 C -0.125 4.125 12 H 0.106 0.894 13 C 0.014 3.986 14 N -0.328 5.328 15 C -0.354 4.354 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.747 3.253 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.003 3.997 24 C 0.021 3.979 25 H 0.079 0.921 26 O -0.374 6.374 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.204 0.796 31 H 0.181 0.819 32 H 0.241 0.759 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.041 0.959 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.140 15.511 5.379 18.790 hybrid contribution 1.638 -1.276 -0.828 2.235 sum -7.503 14.235 4.551 16.722 Atomic orbital electron populations 1.22364 0.72525 1.05987 1.04704 1.45617 1.07916 1.01729 1.49416 1.73201 1.04465 1.13710 1.20105 1.23582 0.93430 0.95028 1.05853 1.22330 0.95710 0.95690 1.07943 1.21463 0.91550 0.89738 1.13741 1.16886 0.85706 0.83049 0.76892 1.90771 1.16177 1.84519 1.50877 1.45730 1.11538 1.06234 1.72151 1.21514 0.96962 0.77905 1.02429 1.22419 0.95432 0.94095 1.00557 0.89405 1.21378 0.93919 0.89823 0.93451 1.44298 1.51849 1.00515 1.36125 1.19045 1.17236 0.92770 1.06373 0.90291 1.24805 1.00593 0.95605 0.99525 1.69750 1.47199 0.99698 1.40497 0.86112 0.80648 0.77140 0.81358 1.21111 1.21518 1.21064 1.22549 0.88876 0.95292 0.93032 1.23305 0.98057 0.92412 0.84078 0.92089 1.86366 1.88213 1.31304 1.31519 0.89717 0.86982 0.89058 0.79579 0.81934 0.75920 0.90746 0.90961 0.95278 0.95651 0.93545 0.87303 0.95932 0.77566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.88 59.85 0.65 1.43 16 2 N -0.26 -3.15 3.75 -63.88 -0.24 -3.39 16 3 N -0.28 -3.44 11.90 30.59 0.36 -3.07 16 4 C 0.00 -0.04 12.03 -17.43 -0.21 -0.24 16 5 C -0.19 -1.97 10.50 -38.98 -0.41 -2.38 16 6 C -0.04 -0.45 6.96 -82.06 -0.57 -1.02 16 7 C 0.59 8.12 7.78 -12.64 -0.10 8.02 16 8 O -0.55 -8.74 14.69 5.26 0.08 -8.66 16 9 N -0.71 -8.98 5.38 -61.46 -0.33 -9.31 16 10 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 11 C -0.11 -1.74 2.75 -88.79 -0.24 -1.98 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.14 2.70 6.52 -3.07 -0.02 2.68 16 14 N -0.60 -14.68 3.39 -170.08 -0.58 -15.25 16 15 C -0.23 -6.08 10.27 -15.06 -0.15 -6.23 16 16 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -25.98 10.09 55.49 0.56 -25.42 16 19 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 2.96 5.62 -2.53 -0.01 2.94 16 24 C 0.08 1.49 3.88 -24.58 -0.10 1.39 16 25 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 26 O -0.57 -9.43 13.47 -35.23 -0.47 -9.90 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 1.12 6.22 -51.93 -0.32 0.80 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.19 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.16 1.30 7.63 -52.49 -0.40 0.90 16 32 H 0.41 4.38 7.41 -40.82 -0.30 4.08 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.10 8.06 -51.93 -0.42 0.69 16 35 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.11 2.81 5.87 -51.93 -0.30 2.50 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.38 4.83 9.12 45.56 0.42 5.25 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -33.04 334.40 -6.55 -39.58 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.66 Total: 7.79 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.28 Total: 6.17 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.22 Total: -56.44 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.40 Total: -18.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.04 -6.55 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957919689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds