Wall clock time and date at job start Tue Mar 31 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28438 * 125.19676 * 2 1 4 4 C 1.30865 * 110.93294 * 179.97438 * 3 2 1 5 5 C 1.39672 * 107.85859 * 0.02562 * 4 3 2 6 6 C 1.36600 * 125.18632 * 179.97438 * 2 1 3 7 7 C 1.47160 * 126.88367 * 359.97438 * 6 2 1 8 8 O 1.21622 * 120.00259 * 5.73663 * 7 6 2 9 9 N 1.34784 * 119.99872 * 185.73289 * 7 6 2 10 10 C 1.46506 * 119.99929 * 185.14484 * 9 7 6 11 11 C 1.52997 * 109.47020 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.64178 * 56.69047 * 11 10 9 13 13 C 1.54323 * 110.72194 * 293.54619 * 11 10 9 14 14 N 1.47016 * 107.27465 * 219.44395 * 13 11 10 15 15 C 1.36929 * 125.65185 * 178.90627 * 14 13 11 16 16 H 1.08006 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00441 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99712 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00541 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47371 * 59.99653 * 19 17 15 21 21 H 1.48497 * 109.47407 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47295 * 299.99981 * 19 17 15 23 23 C 1.47425 * 108.70126 * 358.94002 * 14 13 11 24 24 C 1.54910 * 104.83416 * 24.12883 * 23 14 13 25 25 H 1.09000 * 111.00322 * 81.05944 * 24 23 14 26 26 O 1.42898 * 111.00976 * 204.91404 * 24 23 14 27 27 H 1.08997 * 109.47161 * 86.05643 * 1 2 3 28 28 H 1.08997 * 109.47760 * 206.06350 * 1 2 3 29 29 H 1.09005 * 109.46584 * 326.06119 * 1 2 3 30 30 H 1.07993 * 126.07175 * 179.73817 * 4 3 2 31 31 H 1.08002 * 127.32175 * 179.97438 * 5 4 3 32 32 H 0.96993 * 120.00034 * 5.14860 * 9 7 6 33 33 H 1.08999 * 109.47028 * 300.00661 * 10 9 7 34 34 H 1.09007 * 109.46876 * 59.99935 * 10 9 7 35 35 H 1.09002 * 109.88215 * 338.86310 * 13 11 10 36 36 H 1.09004 * 109.87966 * 100.02326 * 13 11 10 37 37 H 0.96998 * 119.99939 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.36830 * 142.96510 * 23 14 13 39 39 H 1.08998 * 110.37214 * 265.18180 * 23 14 13 40 40 H 0.96695 * 114.00093 * 292.20250 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4736 0.7271 0.0005 5 6 3.5612 -0.6668 0.0003 6 6 2.2521 -1.1164 0.0005 7 6 1.7991 -2.5165 0.0017 8 8 0.6147 -2.7726 -0.1030 9 7 2.6967 -3.5152 0.1186 10 6 2.2602 -4.9092 0.0068 11 6 3.4658 -5.8361 0.1754 12 1 3.9650 -5.6482 1.1259 13 6 4.4509 -5.6701 -1.0009 14 7 4.9520 -7.0092 -1.3429 15 6 5.8338 -7.2983 -2.3498 16 1 6.2209 -6.5055 -2.9728 17 6 6.2294 -8.6104 -2.5707 18 7 5.7572 -9.5767 -1.8119 19 14 7.4318 -9.0048 -3.9448 20 1 8.7067 -8.2804 -3.7101 21 1 7.6912 -10.4666 -3.9711 22 1 6.8537 -8.5807 -5.2453 23 6 4.3473 -7.9895 -0.4227 24 6 3.0356 -7.3225 0.0613 25 1 2.2409 -7.4438 -0.6748 26 8 2.6367 -7.8393 1.3324 27 1 -0.3633 0.0707 -1.0252 28 1 -0.3634 -0.9231 0.4515 29 1 -0.3633 0.8526 0.5738 30 1 4.3049 1.4164 -0.0033 31 1 4.4594 -1.2665 0.0003 32 1 3.6316 -3.3109 0.2769 33 1 1.5254 -5.1232 0.7829 34 1 1.8114 -5.0719 -0.9732 35 1 3.9351 -5.2372 -1.8581 36 1 5.2802 -5.0290 -0.7021 37 1 6.0340 -10.4935 -1.9660 38 1 4.1285 -8.9189 -0.9487 39 1 5.0119 -8.1789 0.4202 40 1 2.3594 -8.7654 1.3110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957919689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:42 Heat of formation + Delta-G solvation = -1.080478 kcal Electronic energy + Delta-G solvation = -23488.832364 eV Core-core repulsion = 19919.351817 eV Total energy + Delta-G solvation = -3569.480547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.51047 -40.73630 -39.65604 -36.65521 -36.25004 -34.39011 -33.94578 -32.37053 -31.02308 -29.24854 -28.04448 -27.29423 -25.52138 -23.84106 -22.53749 -22.13278 -21.46499 -20.85118 -19.23101 -18.83040 -18.22011 -17.35147 -17.27642 -17.03387 -16.46649 -16.25486 -15.70748 -15.65813 -15.19262 -14.74936 -14.72257 -14.47050 -14.32256 -14.02339 -13.72550 -13.67063 -13.26761 -13.24463 -13.08867 -12.71412 -12.38113 -12.35527 -11.88841 -11.87072 -11.86385 -11.44969 -11.17719 -10.80298 -10.71700 -10.43049 -10.08474 -10.00063 -8.90705 -7.78324 -5.23309 0.18572 1.37144 1.49148 1.51416 1.57702 1.63172 2.10142 2.16372 2.49238 3.20632 3.32305 3.49219 3.61159 3.63614 3.77149 3.92779 4.12130 4.14793 4.29367 4.37882 4.43185 4.47192 4.59687 4.60628 4.66704 4.75928 4.86016 4.90074 4.98643 5.21883 5.32323 5.44577 5.50139 5.53137 5.71386 5.75574 6.26411 6.34011 6.89696 6.95969 7.06134 7.09083 7.75794 8.38049 9.23267 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003416 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.765926 B = 8194.313888 C = 9162.383298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.269 5.269 3 N -0.300 5.300 4 C -0.005 4.005 5 C -0.179 4.179 6 C -0.061 4.061 7 C 0.591 3.409 8 O -0.572 6.572 9 N -0.698 5.698 10 C 0.149 3.851 11 C -0.088 4.088 12 H 0.094 0.906 13 C 0.138 3.862 14 N -0.624 5.624 15 C -0.240 4.240 16 H 0.085 0.915 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.277 1.277 23 C 0.133 3.867 24 C 0.097 3.903 25 H 0.069 0.931 26 O -0.569 6.569 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.219 0.781 31 H 0.188 0.812 32 H 0.416 0.584 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.247 0.753 38 H 0.078 0.922 39 H -0.008 1.008 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 16.097 5.392 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.058 5.058 3 N -0.133 5.133 4 C -0.180 4.180 5 C -0.208 4.208 6 C -0.189 4.189 7 C 0.377 3.623 8 O -0.453 6.453 9 N -0.349 5.349 10 C 0.025 3.975 11 C -0.108 4.108 12 H 0.113 0.887 13 C 0.013 3.987 14 N -0.351 5.351 15 C -0.368 4.368 16 H 0.103 0.897 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.203 1.203 23 C 0.007 3.993 24 C 0.037 3.963 25 H 0.086 0.914 26 O -0.376 6.376 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.235 0.765 31 H 0.205 0.795 32 H 0.254 0.746 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.010 0.990 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.800 17.246 5.404 20.101 hybrid contribution 1.544 -1.767 -0.800 2.479 sum -7.256 15.478 4.604 17.704 Atomic orbital electron populations 1.22474 0.71662 1.06325 1.05412 1.45869 1.08673 1.01605 1.49605 1.73198 1.05427 1.14016 1.20672 1.24191 0.93621 0.95611 1.04600 1.22715 0.95721 0.96104 1.06248 1.21457 0.92607 0.89201 1.15613 1.17047 0.85310 0.83682 0.76213 1.90757 1.17342 1.85004 1.52185 1.45564 1.12060 1.05372 1.71897 1.21229 0.95718 0.78374 1.02135 1.22244 0.95472 0.93358 0.99688 0.88740 1.21544 0.94831 0.87671 0.94605 1.44580 1.51782 1.02863 1.35853 1.19441 1.17408 0.93077 1.06917 0.89695 1.25620 1.02612 0.95688 1.01908 1.69999 1.48361 0.99552 1.41947 0.85128 0.78781 0.76350 0.78928 1.20404 1.22147 1.20283 1.22322 0.90677 0.94817 0.91517 1.22982 0.95595 0.92955 0.84813 0.91351 1.86341 1.87925 1.32897 1.30437 0.89075 0.88004 0.87093 0.76497 0.79506 0.74645 0.90607 0.91600 0.94790 0.94248 0.94283 0.90409 0.98983 0.75639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.88 127.77 1.39 2.83 16 2 N -0.27 -6.19 3.75 -356.02 -1.33 -7.53 16 3 N -0.30 -6.76 11.90 -57.14 -0.68 -7.44 16 4 C -0.01 -0.09 12.03 85.18 1.02 0.93 16 5 C -0.18 -3.28 10.50 22.66 0.24 -3.04 16 6 C -0.06 -1.41 6.96 40.79 0.28 -1.13 16 7 C 0.59 15.44 7.78 86.58 0.67 16.12 16 8 O -0.57 -17.92 14.69 -4.10 -0.06 -17.98 16 9 N -0.70 -16.29 5.38 -466.62 -2.51 -18.80 16 10 C 0.15 4.01 5.00 86.38 0.43 4.45 16 11 C -0.09 -2.75 2.75 -9.61 -0.03 -2.77 16 12 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 13 C 0.14 5.11 6.52 86.73 0.57 5.67 16 14 N -0.62 -30.41 3.39 -692.00 -2.35 -32.76 16 15 C -0.24 -12.87 10.27 84.03 0.86 -12.01 16 16 H 0.09 4.33 7.83 -2.91 -0.02 4.30 16 17 C -0.07 -3.60 5.49 84.86 0.47 -3.14 16 18 N -0.95 -54.68 10.09 21.65 0.22 -54.46 16 19 Si 0.98 44.22 29.55 68.60 2.03 46.25 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.13 6.22 5.62 86.86 0.49 6.71 16 24 C 0.10 3.45 3.88 31.99 0.12 3.57 16 25 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 26 O -0.57 -18.03 13.47 -148.98 -2.01 -20.04 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 2.02 6.22 -2.39 -0.01 2.01 16 29 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.22 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.19 2.32 7.63 -2.91 -0.02 2.29 16 32 H 0.42 7.86 7.41 -92.71 -0.69 7.18 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16 35 H 0.03 1.24 7.76 -2.39 -0.02 1.22 16 36 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 38 H 0.08 4.15 5.87 -2.39 -0.01 4.13 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 40 H 0.39 9.60 9.12 -74.06 -0.68 8.93 16 Total: -1.00 -71.30 334.40 -0.45 -71.76 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.28 Total: 22.81 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.52 Total: 18.19 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.65 Total: -120.98 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -2.07 Total: -38.02 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.30 -0.45 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957919689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.677 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds