Wall clock time and date at job start Tue Mar 31 2020 03:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30852 * 125.41518 * 2 1 4 4 C 1.33323 * 109.68418 * 179.97438 * 3 2 1 5 5 C 1.36662 * 107.78349 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84424 * 180.02562 * 5 4 3 7 7 O 1.21690 * 119.99900 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00141 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99929 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47255 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.88627 * 57.42732 * 10 9 8 12 12 C 1.54906 * 111.00525 * 293.55178 * 10 9 8 13 13 N 1.47428 * 104.83346 * 204.87480 * 12 10 9 14 14 C 1.36941 * 125.64931 * 204.08998 * 13 12 10 15 15 H 1.07997 * 119.99738 * 10.06029 * 14 13 12 16 16 C 1.38812 * 119.99917 * 190.05571 * 14 13 12 17 17 N 1.31616 * 120.00089 * 195.14817 * 16 14 13 18 18 Si 1.86800 * 119.99891 * 15.14905 * 16 14 13 19 19 H 1.48500 * 109.47302 * 54.48816 * 18 16 14 20 20 H 1.48502 * 109.47147 * 294.49056 * 18 16 14 21 21 H 1.48504 * 109.46982 * 174.49184 * 18 16 14 22 22 C 1.47022 * 108.70231 * 24.35316 * 13 12 10 23 23 C 1.54343 * 107.26379 * 358.58832 * 22 13 12 24 24 H 1.08993 * 110.84871 * 219.67080 * 23 22 13 25 25 O 1.42897 * 110.66628 * 96.51874 * 23 22 13 26 26 N 1.34496 * 125.41718 * 180.30830 * 2 1 3 27 27 H 0.96998 * 126.47706 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.46765 * 89.98384 * 1 2 3 29 29 H 1.09003 * 109.46605 * 209.97795 * 1 2 3 30 30 H 1.08993 * 109.47041 * 329.97882 * 1 2 3 31 31 H 1.07998 * 126.10710 * 180.02562 * 4 3 2 32 32 H 0.97002 * 120.00269 * 359.97438 * 8 6 5 33 33 H 1.09010 * 109.47051 * 60.00527 * 9 8 6 34 34 H 1.08997 * 109.47589 * 300.00010 * 9 8 6 35 35 H 1.09008 * 110.36912 * 86.03711 * 12 10 9 36 36 H 1.08996 * 110.46356 * 323.76007 * 12 10 9 37 37 H 0.97005 * 120.00002 * 2.98123 * 17 16 14 38 38 H 1.09003 * 109.88013 * 118.12614 * 22 13 12 39 39 H 1.08998 * 109.88605 * 239.29588 * 22 13 12 40 40 H 0.96700 * 113.99862 * 66.41842 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5976 -0.6608 0.0015 6 6 4.8029 -1.4982 0.0029 7 8 5.9039 -0.9799 0.0038 8 7 4.6903 -2.8412 0.0032 9 6 5.8935 -3.6771 0.0040 10 6 5.4893 -5.1528 0.0049 11 1 4.8581 -5.3833 -0.8533 12 6 4.7850 -5.5349 1.3306 13 7 5.0032 -6.9863 1.4693 14 6 4.2187 -7.8460 2.1909 15 1 3.2708 -7.5104 2.5849 16 6 4.6419 -9.1487 2.4160 17 7 3.7860 -10.0550 2.8385 18 14 6.4261 -9.6157 2.1192 19 1 7.3106 -8.7080 2.8931 20 1 6.7356 -9.4932 0.6720 21 1 6.6503 -11.0170 2.5566 22 6 6.2062 -7.3569 0.7096 23 6 6.7385 -6.0724 0.0394 24 1 7.0927 -6.2799 -0.9702 25 8 7.7765 -5.4857 0.8269 26 7 2.2865 -1.0961 -0.0059 27 1 1.9851 -2.0180 -0.0112 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3632 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5141 31 1 4.3978 1.3722 0.0011 32 1 3.8127 -3.2544 0.0029 33 1 6.4846 -3.4623 0.8944 34 1 6.4856 -3.4628 -0.8856 35 1 3.7189 -5.3155 1.2708 36 1 5.2347 -5.0019 2.1684 37 1 2.8507 -9.8235 2.9512 38 1 6.9593 -7.7649 1.3838 39 1 5.9510 -8.0924 -0.0532 40 1 8.5799 -6.0212 0.8805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957930014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:13 Heat of formation + Delta-G solvation = -26.200934 kcal Electronic energy + Delta-G solvation = -23520.756477 eV Core-core repulsion = 19950.186625 eV Total energy + Delta-G solvation = -3570.569851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.29541 -40.81663 -39.91489 -36.60220 -36.29800 -34.37492 -33.77326 -32.92766 -31.80276 -29.79965 -28.62547 -27.26694 -25.12649 -23.60675 -22.76920 -21.96408 -21.59580 -21.17950 -19.89928 -19.58279 -18.42835 -17.40165 -17.08501 -16.90151 -16.80975 -16.04084 -15.95045 -15.65678 -15.32992 -15.08117 -14.95543 -14.74725 -14.34926 -14.28519 -14.09352 -13.59103 -13.40590 -13.25150 -13.11954 -12.66523 -12.34526 -12.18665 -11.82445 -11.69397 -11.57525 -11.28252 -11.24891 -11.09317 -10.98132 -10.56741 -10.31634 -9.56398 -9.14207 -8.68424 -5.50532 0.17058 1.34773 1.48724 1.69829 1.70550 1.75722 2.02531 2.21397 2.52483 3.05317 3.17646 3.23817 3.36431 3.64583 3.66593 3.78263 3.83793 4.02925 4.23841 4.26514 4.31661 4.49102 4.56275 4.58105 4.69713 4.73657 4.81798 4.82615 4.87877 4.99310 5.09833 5.18529 5.28092 5.43969 5.48797 6.06204 6.18533 6.32762 6.78206 6.82813 6.86537 6.97729 7.40073 8.04803 8.84978 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.003599 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.181266 B = 7777.372703 C = 8880.476382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.248 3.752 3 N -0.528 5.528 4 C 0.058 3.942 5 C -0.102 4.102 6 C 0.596 3.404 7 O -0.565 6.565 8 N -0.715 5.715 9 C 0.152 3.848 10 C -0.094 4.094 11 H 0.118 0.882 12 C 0.140 3.860 13 N -0.630 5.630 14 C -0.313 4.313 15 H 0.048 0.952 16 C -0.082 4.082 17 N -0.965 5.965 18 Si 1.110 2.890 19 H -0.289 1.289 20 H -0.242 1.242 21 H -0.316 1.316 22 C 0.068 3.932 23 C 0.112 3.888 24 H 0.112 0.888 25 O -0.569 6.569 26 N -0.540 5.540 27 H 0.436 0.564 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.184 0.816 32 H 0.407 0.593 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.248 0.752 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 16.588 -11.306 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 N -0.249 5.249 4 C -0.096 4.096 5 C -0.218 4.218 6 C 0.384 3.616 7 O -0.444 6.444 8 N -0.366 5.366 9 C 0.029 3.971 10 C -0.114 4.114 11 H 0.136 0.864 12 C 0.015 3.985 13 N -0.358 5.358 14 C -0.442 4.442 15 H 0.066 0.934 16 C -0.274 4.274 17 N -0.609 5.609 18 Si 0.938 3.062 19 H -0.217 1.217 20 H -0.166 1.166 21 H -0.245 1.245 22 C -0.057 4.057 23 C 0.052 3.948 24 H 0.129 0.871 25 O -0.378 6.378 26 N -0.147 5.147 27 H 0.278 0.722 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.201 0.799 32 H 0.242 0.758 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.763 16.914 -11.105 20.249 hybrid contribution -1.223 -0.924 0.641 1.661 sum -1.986 15.990 -10.465 19.213 Atomic orbital electron populations 1.20554 0.81099 1.05986 1.05609 1.24280 0.97421 0.80900 0.98986 1.70225 1.02219 1.29693 1.22778 1.22832 0.95246 0.91750 0.99738 1.20907 0.84283 0.95700 1.20890 1.16969 0.86917 0.81772 0.75975 1.90837 1.27360 1.73936 1.52252 1.45828 1.10861 1.05236 1.74664 1.20993 0.86163 0.87111 1.02854 1.22637 0.96400 0.93347 0.98970 0.86440 1.21713 0.97994 0.83737 0.95030 1.44838 1.29323 1.04060 1.57530 1.20072 0.99757 0.93778 1.30560 0.93411 1.27152 1.09429 0.91913 0.98946 1.71013 1.03654 1.34870 1.51358 0.83396 0.71202 0.73114 0.78446 1.21710 1.16641 1.24528 1.23010 0.89283 0.98601 0.94778 1.22721 0.87697 0.89802 0.94548 0.87062 1.86446 1.27379 1.49859 1.74095 1.43201 1.04948 1.11181 1.55353 0.72195 0.87779 0.88019 0.88278 0.79872 0.75778 0.92030 0.90035 0.93476 0.96828 0.94319 0.95250 0.93019 0.75363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.25 4.13 8.12 138.20 1.12 5.25 16 3 N -0.53 -12.26 11.20 -187.39 -2.10 -14.36 16 4 C 0.06 1.42 11.66 84.10 0.98 2.40 16 5 C -0.10 -2.30 7.08 40.01 0.28 -2.01 16 6 C 0.60 15.59 7.79 86.47 0.67 16.27 16 7 O -0.56 -18.96 16.90 -4.32 -0.07 -19.03 16 8 N -0.72 -15.71 5.40 -466.98 -2.52 -18.23 16 9 C 0.15 3.78 4.74 86.38 0.41 4.18 16 10 C -0.09 -2.45 3.03 -9.40 -0.03 -2.48 16 11 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 12 C 0.14 5.05 6.40 86.85 0.56 5.60 16 13 N -0.63 -28.78 3.33 -691.94 -2.30 -31.08 16 14 C -0.31 -17.66 10.56 84.03 0.89 -16.78 16 15 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 16 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 17 N -0.96 -61.25 13.71 21.65 0.30 -60.95 16 18 Si 1.11 51.98 24.52 68.60 1.68 53.66 16 19 H -0.29 -12.99 6.82 99.48 0.68 -12.31 16 20 H -0.24 -9.47 5.41 99.48 0.54 -8.93 16 21 H -0.32 -15.47 7.11 99.48 0.71 -14.76 16 22 C 0.07 2.56 4.38 86.74 0.38 2.94 16 23 C 0.11 3.02 4.09 31.79 0.13 3.15 16 24 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 25 O -0.57 -15.20 12.09 -148.98 -1.80 -17.00 16 26 N -0.54 -8.46 6.07 -176.11 -1.07 -9.53 16 27 H 0.44 4.03 8.32 -92.71 -0.77 3.26 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.18 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.41 6.87 7.58 -92.71 -0.70 6.17 16 33 H 0.06 1.87 7.43 -2.38 -0.02 1.85 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.01 0.55 8.01 -2.39 -0.02 0.53 16 37 H 0.25 15.76 8.73 -92.70 -0.81 14.95 16 38 H 0.03 1.19 3.82 -2.39 -0.01 1.18 16 39 H 0.05 1.97 6.70 -2.39 -0.02 1.96 16 40 H 0.40 7.31 9.12 -74.06 -0.68 6.64 16 Total: -1.00 -82.33 329.21 -2.56 -84.90 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -1.28 Total: 17.22 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.61 Total: 14.41 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -7.70 Total: -134.15 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.87 Total: -36.03 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 1.68 Total: 53.66 kcal Total: -82.33 -2.56 -84.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957930014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.698 kcal (2) G-P(sol) polarization free energy of solvation -82.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds