Wall clock time and date at job start Tue Mar 31 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29949 * 126.28459 * 2 1 4 4 O 1.21299 * 110.24851 * 179.97438 * 3 2 1 5 5 C 1.33649 * 109.81360 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55432 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47066 * 270.02856 * 6 5 4 8 8 C 1.50698 * 109.47066 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00002 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99936 * 180.02562 * 8 7 6 11 11 C 1.47425 * 125.64662 * 359.96741 * 10 8 7 12 12 C 1.54912 * 104.83031 * 155.91189 * 11 10 8 13 13 C 1.55165 * 101.58248 * 37.00710 * 12 11 10 14 14 H 1.08999 * 110.71851 * 83.03672 * 13 12 11 15 15 N 1.46490 * 110.72000 * 206.13624 * 13 12 11 16 16 C 1.36935 * 120.00121 * 271.15446 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.47316 * 125.61251 * 180.19889 * 10 8 7 25 25 N 1.31135 * 106.89268 * 0.22705 * 5 4 3 26 26 H 1.09005 * 109.47340 * 89.97564 * 1 2 3 27 27 H 1.09006 * 109.47389 * 209.97537 * 1 2 3 28 28 H 1.08995 * 109.47537 * 329.97774 * 1 2 3 29 29 H 1.08997 * 109.46929 * 150.02622 * 6 5 4 30 30 H 1.08998 * 109.46924 * 30.02386 * 6 5 4 31 31 H 1.09004 * 109.47475 * 59.99375 * 7 6 5 32 32 H 1.08997 * 109.47017 * 300.00097 * 7 6 5 33 33 H 1.08990 * 110.36757 * 37.07375 * 11 10 8 34 34 H 1.09000 * 110.45945 * 274.79065 * 11 10 8 35 35 H 1.08997 * 111.00361 * 278.93988 * 12 11 10 36 36 H 1.08998 * 111.00614 * 155.08391 * 12 11 10 37 37 H 0.97000 * 120.00577 * 91.16046 * 15 13 12 38 38 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 39 39 H 1.08997 * 110.06928 * 61.67433 * 24 10 8 40 40 H 1.09000 * 109.84708 * 300.41113 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0015 6 6 4.7969 -1.4370 0.0018 7 6 5.2258 -1.7135 -1.4406 8 6 6.4932 -2.5288 -1.4403 9 8 7.0035 -2.8560 -0.3898 10 7 7.0602 -2.8935 -2.6074 11 6 6.5488 -2.5652 -3.9506 12 6 7.7895 -2.6362 -4.8754 13 6 8.5667 -3.8314 -4.2630 14 1 8.1777 -4.7777 -4.6391 15 7 10.0001 -3.7150 -4.5416 16 6 10.5202 -4.2505 -5.6896 17 1 9.8736 -4.7584 -6.3898 18 6 11.8786 -4.1407 -5.9534 19 7 12.6669 -3.5222 -5.0998 20 14 12.5879 -4.8707 -7.5198 21 1 13.0032 -6.2741 -7.2680 22 1 11.5580 -4.8435 -8.5892 23 1 13.7666 -4.0749 -7.9473 24 6 8.2910 -3.6901 -2.7511 25 7 2.3030 -1.0841 -0.0035 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8897 0.5141 29 1 4.6206 -2.3818 0.5159 30 1 5.5842 -0.8852 0.5154 31 1 5.4021 -0.7687 -1.9548 32 1 4.4385 -2.2652 -1.9543 33 1 6.1254 -1.5610 -3.9603 34 1 5.8012 -3.2945 -4.2623 35 1 8.3744 -1.7183 -4.8157 36 1 7.4982 -2.8458 -5.9046 37 1 10.5810 -3.2587 -3.9130 38 1 12.2984 -3.1429 -4.2866 39 1 8.1530 -4.6754 -2.3058 40 1 9.1228 -3.1764 -2.2692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969524901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:51 Heat of formation + Delta-G solvation = 19.159606 kcal Electronic energy + Delta-G solvation = -22730.893125 eV Core-core repulsion = 19162.290255 eV Total energy + Delta-G solvation = -3568.602871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.67207 -41.16754 -38.90729 -37.19451 -36.24908 -35.72190 -33.44724 -32.53006 -30.94031 -30.12448 -29.39193 -26.86074 -25.38665 -24.58861 -23.94920 -22.31055 -21.71908 -20.30170 -19.54308 -19.20977 -18.62781 -18.10420 -17.42396 -16.79987 -16.61080 -16.12125 -15.65576 -15.49987 -15.13858 -14.78751 -14.52601 -14.47531 -14.12011 -13.90590 -13.75544 -13.49375 -13.33157 -13.25037 -13.18128 -12.78117 -12.45475 -12.41117 -12.34559 -12.28295 -12.09990 -11.85752 -11.79115 -11.30097 -11.11375 -10.93693 -10.88184 -9.74669 -9.15223 -8.38797 -5.34839 0.03134 1.12210 1.53732 1.60239 1.62124 1.71151 1.84770 1.97984 2.63160 2.72903 3.03726 3.34729 3.43309 3.63363 3.67939 3.80790 3.91273 3.97321 4.08796 4.20350 4.32648 4.39592 4.43444 4.49182 4.57570 4.58207 4.63612 4.76229 4.79954 4.88693 4.89984 4.94397 5.09245 5.11728 5.19207 5.37215 5.61681 6.46765 6.49020 7.03060 7.06600 7.08675 7.95110 8.07487 9.12612 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.042219 B = 0.002386 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.045085 B =11732.413217 C =11961.431666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.163 3.837 3 N -0.411 5.411 4 O 0.068 5.932 5 C 0.198 3.802 6 C -0.008 4.008 7 C -0.120 4.120 8 C 0.528 3.472 9 O -0.583 6.583 10 N -0.613 5.613 11 C 0.105 3.895 12 C -0.146 4.146 13 C 0.167 3.833 14 H 0.068 0.932 15 N -0.744 5.744 16 C -0.327 4.327 17 H 0.074 0.926 18 C -0.107 4.107 19 N -0.977 5.977 20 Si 1.131 2.869 21 H -0.287 1.287 22 H -0.268 1.268 23 H -0.297 1.297 24 C 0.110 3.890 25 N -0.499 5.499 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.359 0.641 38 H 0.243 0.757 39 H 0.064 0.936 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.464 6.063 6.654 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.122 5.122 4 O 0.013 5.987 5 C -0.022 4.022 6 C -0.047 4.047 7 C -0.161 4.161 8 C 0.318 3.682 9 O -0.464 6.464 10 N -0.347 5.347 11 C -0.016 4.016 12 C -0.187 4.187 13 C 0.058 3.942 14 H 0.086 0.914 15 N -0.385 5.385 16 C -0.458 4.458 17 H 0.092 0.908 18 C -0.298 4.298 19 N -0.625 5.625 20 Si 0.955 3.045 21 H -0.214 1.214 22 H -0.193 1.193 23 H -0.224 1.224 24 C -0.015 4.015 25 N -0.234 5.234 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.191 0.809 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.639 6.075 6.225 26.129 hybrid contribution -0.439 0.336 1.307 1.419 sum -25.078 6.411 7.532 26.958 Atomic orbital electron populations 1.20359 0.80423 1.05741 1.05634 1.26658 1.02165 0.82981 0.99107 1.74660 0.89731 1.24756 1.23055 1.85288 1.22317 1.25176 1.65901 1.28964 0.97061 0.81903 0.94259 1.19971 0.87457 0.98979 0.98286 1.21554 0.94664 1.02328 0.97518 1.20654 0.86152 0.79783 0.81584 1.90719 1.65888 1.57935 1.31839 1.48605 1.25922 1.53028 1.07129 1.22560 0.96352 1.03142 0.79581 1.23350 0.96162 0.99328 0.99862 1.21351 0.84051 0.97502 0.91308 0.91424 1.42578 1.03974 1.68154 1.23831 1.20391 0.94668 1.31790 0.98950 0.90758 1.27226 0.93529 1.01495 1.07538 1.70971 1.37490 1.41660 1.12412 0.82584 0.75174 0.75102 0.71598 1.21392 1.19301 1.22351 1.22029 0.86894 0.95146 0.97383 1.71965 1.00200 1.29869 1.21339 0.87763 0.87914 0.88442 0.86299 0.86462 0.85888 0.85909 0.87718 0.88621 0.92618 0.89528 0.80923 0.94622 0.91799 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.13 16 2 C 0.16 3.00 8.22 138.46 1.14 4.14 16 3 N -0.41 -8.77 12.16 -60.31 -0.73 -9.50 16 4 O 0.07 1.37 11.31 74.78 0.85 2.22 16 5 C 0.20 3.49 7.77 88.38 0.69 4.18 16 6 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 7 C -0.12 -1.74 4.69 29.85 0.14 -1.60 16 8 C 0.53 12.95 7.85 87.66 0.69 13.63 16 9 O -0.58 -19.02 16.31 -3.03 -0.05 -19.07 16 10 N -0.61 -15.87 3.33 -811.04 -2.70 -18.57 16 11 C 0.11 2.08 6.69 86.86 0.58 2.66 16 12 C -0.15 -4.22 6.77 31.99 0.22 -4.00 16 13 C 0.17 6.08 3.59 46.19 0.17 6.25 16 14 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 15 N -0.74 -35.93 5.23 -317.33 -1.66 -37.60 16 16 C -0.33 -17.53 9.97 84.03 0.84 -16.69 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.11 -6.06 5.50 84.86 0.47 -5.60 16 19 N -0.98 -60.70 13.70 21.65 0.30 -60.41 16 20 Si 1.13 50.65 29.92 68.60 2.05 52.70 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 24 C 0.11 3.67 6.64 86.67 0.58 4.25 16 25 N -0.50 -9.81 11.55 -303.19 -3.50 -13.31 16 26 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.12 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.12 1.32 7.85 -2.39 -0.02 1.31 16 32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.44 7.48 -2.39 -0.02 1.42 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.36 18.60 6.37 -92.71 -0.59 18.01 16 38 H 0.24 15.13 6.77 -92.71 -0.63 14.50 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.74 7.70 -2.39 -0.02 1.72 16 Total: -1.00 -74.44 341.59 1.55 -72.89 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.61 Total: 23.26 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.40 Total: 7.40 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -8.30 Total: -139.39 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.80 Total: -16.86 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -74.44 1.55 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969524901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.047 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds