Wall clock time and date at job start Tue Mar 31 2020 04:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35847 * 117.00139 * 2 1 4 4 N 1.30813 * 126.05970 * 359.97438 * 3 2 1 5 5 N 1.39921 * 108.88155 * 180.02562 * 4 3 2 6 6 C 1.46503 * 125.68675 * 180.02562 * 5 4 3 7 7 C 1.34169 * 108.62058 * 359.74947 * 5 4 3 8 8 C 1.38131 * 107.50923 * 0.39436 * 7 5 4 9 9 C 1.47247 * 126.44505 * 179.87026 * 8 7 5 10 10 O 1.21621 * 120.00044 * 179.68844 * 9 8 7 11 11 N 1.34771 * 120.00052 * 359.68883 * 9 8 7 12 12 C 1.47026 * 125.65100 * 0.02633 * 11 9 8 13 13 C 1.54316 * 107.27365 * 180.79395 * 12 11 9 14 14 C 1.55160 * 102.94268 * 22.19228 * 13 12 11 15 15 H 1.08991 * 111.00600 * 82.57442 * 14 13 12 16 16 N 1.46502 * 111.00224 * 206.42392 * 14 13 12 17 17 C 1.36944 * 120.00018 * 204.99552 * 16 14 13 18 18 H 1.07993 * 119.99709 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99988 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00065 * 180.02562 * 19 17 16 21 21 Si 1.86810 * 120.00314 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46818 * 89.99962 * 21 19 17 23 23 H 1.48498 * 109.47046 * 210.00231 * 21 19 17 24 24 H 1.48495 * 109.46869 * 330.00088 * 21 19 17 25 25 C 1.47425 * 125.64767 * 179.71635 * 11 9 8 26 26 H 1.09004 * 109.47332 * 300.00365 * 1 2 3 27 27 H 1.09004 * 109.46670 * 60.00498 * 1 2 3 28 28 H 1.09002 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46952 * 89.97331 * 6 5 4 30 30 H 1.08997 * 109.46595 * 209.97311 * 6 5 4 31 31 H 1.08997 * 109.46772 * 329.97298 * 6 5 4 32 32 H 1.08000 * 126.24366 * 180.27173 * 7 5 4 33 33 H 1.09004 * 109.87531 * 300.21113 * 12 11 9 34 34 H 1.09000 * 109.87938 * 61.37366 * 12 11 9 35 35 H 1.08997 * 110.72381 * 140.55486 * 13 12 11 36 36 H 1.09003 * 110.72277 * 263.65209 * 13 12 11 37 37 H 0.97005 * 120.00220 * 25.00616 * 16 14 13 38 38 H 0.97000 * 120.00338 * 180.02562 * 20 19 17 39 39 H 1.09001 * 110.36478 * 274.97629 * 25 11 9 40 40 H 1.08998 * 110.36859 * 37.30006 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 -0.0009 6 6 2.1704 4.8222 -0.0009 7 6 3.6386 2.8012 0.0049 8 6 3.4452 1.4335 0.0000 9 6 4.4956 0.4015 0.0008 10 8 4.1912 -0.7760 0.0018 11 7 5.7942 0.7618 0.0006 12 6 6.3006 2.1421 0.0001 13 6 7.8417 2.0649 -0.0204 14 6 8.1111 0.6516 -0.6014 15 1 8.0563 0.6597 -1.6899 16 7 9.4043 0.1347 -0.1466 17 6 10.0670 -0.8037 -0.8920 18 1 9.6365 -1.1623 -1.8152 19 6 11.2920 -1.2938 -0.4609 20 7 11.9292 -2.1953 -1.1776 21 14 12.0363 -0.6739 1.1364 22 1 11.5788 -1.5296 2.2605 23 1 13.5176 -0.7263 1.0454 24 1 11.6042 0.7269 1.3730 25 6 6.9424 -0.1629 0.0074 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.1064 5.1798 1.0267 30 1 2.9827 5.3364 -0.5147 31 1 1.2305 5.0232 -0.5149 32 1 4.5904 3.3115 0.0103 33 1 5.9439 2.6674 -0.8859 34 1 5.9672 2.6596 0.8997 35 1 8.2578 2.8347 -0.6702 36 1 8.2458 2.1537 0.9881 37 1 9.7910 0.4570 0.6825 38 1 12.7851 -2.5381 -0.8762 39 1 7.1808 -0.4641 1.0274 40 1 6.7289 -1.0373 -0.6073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969560913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:10 Heat of formation + Delta-G solvation = 47.647253 kcal Electronic energy + Delta-G solvation = -23569.400245 eV Core-core repulsion = 20002.032692 eV Total energy + Delta-G solvation = -3567.367554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70228 -39.38617 -38.41448 -37.11213 -34.27785 -33.13409 -31.80482 -30.66425 -29.89314 -28.10723 -27.80086 -26.39144 -24.24211 -22.88509 -21.68114 -21.18558 -20.32529 -19.66192 -17.87563 -17.29076 -16.83981 -16.52618 -16.02241 -15.93888 -15.30949 -15.20718 -14.83748 -14.46126 -13.88736 -13.78903 -13.45104 -13.21809 -13.08598 -12.96602 -12.62004 -12.42704 -12.24333 -12.10062 -11.70329 -11.40150 -11.23669 -11.07107 -10.83795 -10.77434 -10.49487 -10.09386 -9.65737 -9.59735 -9.34089 -9.02836 -8.69658 -8.27984 -7.37007 -5.81253 -3.19515 1.29451 1.93826 2.14781 2.99762 3.33452 3.35722 3.38661 3.43922 3.60720 4.10455 4.38804 4.54657 4.71427 4.75373 4.77776 4.92706 4.97666 5.04124 5.06152 5.08086 5.20257 5.28831 5.33519 5.42369 5.56682 5.58480 5.67439 5.81659 5.88615 6.13594 6.27266 6.47009 6.54449 6.63614 6.79516 7.03053 7.41485 7.84590 7.93654 8.37143 8.55631 9.13730 9.85404 10.03037 11.36481 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.003409 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.209807 B = 8211.630544 C = 8956.513155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.266 6.266 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.353 5.353 6 C 0.100 3.900 7 C 0.108 3.892 8 C -0.282 4.282 9 C 0.603 3.397 10 O -0.533 6.533 11 N -0.614 5.614 12 C 0.097 3.903 13 C -0.145 4.145 14 C 0.177 3.823 15 H 0.077 0.923 16 N -0.735 5.735 17 C -0.253 4.253 18 H 0.093 0.907 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.085 3.915 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.200 0.800 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.364 0.636 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.616 17.799 3.458 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.110 3.890 4 N -0.196 5.196 5 N -0.134 5.134 6 C -0.040 4.040 7 C -0.043 4.043 8 C -0.297 4.297 9 C 0.392 3.608 10 O -0.410 6.410 11 N -0.349 5.349 12 C -0.026 4.026 13 C -0.184 4.184 14 C 0.065 3.935 15 H 0.095 0.905 16 N -0.376 5.376 17 C -0.382 4.382 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.576 5.576 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.040 4.040 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.217 0.783 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.822 17.335 3.261 28.059 hybrid contribution 1.103 0.193 1.215 1.652 sum -20.720 17.527 4.476 27.506 Atomic orbital electron populations 1.23027 0.77872 1.03792 1.01830 1.86536 1.21643 1.20386 1.88194 1.20405 0.90081 0.85228 0.93275 1.77273 1.13321 0.94587 1.34382 1.47709 1.03283 1.06430 1.55998 1.21994 1.04541 0.73602 1.03890 1.23866 0.91433 0.92552 0.96478 1.19731 0.91741 0.92641 1.25623 1.16711 0.80176 0.87314 0.76625 1.90814 1.81363 1.18072 1.50705 1.48278 1.05073 1.07983 1.73598 1.22254 0.95563 0.84565 1.00251 1.22996 0.92856 1.00025 1.02544 1.21287 0.85020 0.89406 0.97748 0.90510 1.42643 1.18921 1.49609 1.26474 1.19099 1.00795 1.13945 1.04385 0.88923 1.24687 0.97261 0.98558 0.98239 1.69702 1.16625 1.32226 1.39059 0.86559 0.78776 0.78516 0.84703 1.20941 1.21666 1.20255 1.23290 0.84800 0.94067 1.01793 0.92570 0.92522 0.88002 0.90235 0.88787 0.88900 0.78322 0.91466 0.91758 0.89903 0.90627 0.80265 0.92910 0.91672 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.27 -4.10 9.98 -24.61 -0.25 -4.35 16 3 C 0.32 4.74 7.85 -16.66 -0.13 4.61 16 4 N -0.36 -4.54 11.90 30.79 0.37 -4.18 16 5 N -0.35 -3.34 3.98 -67.60 -0.27 -3.61 16 6 C 0.10 0.41 11.44 59.85 0.68 1.09 16 7 C 0.11 1.08 9.96 -16.57 -0.17 0.91 16 8 C -0.28 -4.13 6.11 -104.95 -0.64 -4.77 16 9 C 0.60 10.69 7.84 -12.60 -0.10 10.59 16 10 O -0.53 -11.72 16.69 -0.09 0.00 -11.72 16 11 N -0.61 -9.70 3.33 -171.85 -0.57 -10.27 16 12 C 0.10 1.07 4.98 -3.07 -0.02 1.06 16 13 C -0.15 -1.87 6.60 -24.90 -0.16 -2.04 16 14 C 0.18 3.19 3.71 -65.78 -0.24 2.95 16 15 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 16 N -0.74 -16.51 5.05 -51.35 -0.26 -16.77 16 17 C -0.25 -6.93 10.44 -15.06 -0.16 -7.09 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 21 Si 0.88 21.48 27.74 -169.99 -4.71 16.77 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 25 C 0.09 1.58 6.60 -2.53 -0.02 1.56 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.20 1.25 4.42 -52.49 -0.23 1.02 16 33 H 0.07 0.58 6.88 -51.93 -0.36 0.23 16 34 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 37 H 0.36 7.94 5.63 -40.82 -0.23 7.71 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -37.61 334.63 -5.25 -42.86 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.41 Total: 3.84 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 0.04 Total: 10.44 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.04 Total: -62.87 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.25 Total: -16.07 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.61 -5.25 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969560913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.505 kcal (2) G-P(sol) polarization free energy of solvation -37.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds