Wall clock time and date at job start Tue Mar 31 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35847 * 117.00139 * 2 1 4 4 N 1.30813 * 126.05970 * 359.97438 * 3 2 1 5 5 N 1.39921 * 108.88155 * 180.02562 * 4 3 2 6 6 C 1.46503 * 125.68675 * 180.02562 * 5 4 3 7 7 C 1.34169 * 108.62058 * 359.74947 * 5 4 3 8 8 C 1.38131 * 107.50923 * 0.39436 * 7 5 4 9 9 C 1.47247 * 126.44505 * 179.87026 * 8 7 5 10 10 O 1.21621 * 120.00044 * 179.68844 * 9 8 7 11 11 N 1.34771 * 120.00052 * 359.68883 * 9 8 7 12 12 C 1.47026 * 125.65100 * 0.02633 * 11 9 8 13 13 C 1.54316 * 107.27365 * 180.79395 * 12 11 9 14 14 C 1.55160 * 102.94268 * 22.19228 * 13 12 11 15 15 H 1.08991 * 111.00600 * 82.57442 * 14 13 12 16 16 N 1.46502 * 111.00224 * 206.42392 * 14 13 12 17 17 C 1.36944 * 120.00018 * 204.99552 * 16 14 13 18 18 H 1.07993 * 119.99709 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99988 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00065 * 180.02562 * 19 17 16 21 21 Si 1.86810 * 120.00314 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46818 * 89.99962 * 21 19 17 23 23 H 1.48498 * 109.47046 * 210.00231 * 21 19 17 24 24 H 1.48495 * 109.46869 * 330.00088 * 21 19 17 25 25 C 1.47425 * 125.64767 * 179.71635 * 11 9 8 26 26 H 1.09004 * 109.47332 * 300.00365 * 1 2 3 27 27 H 1.09004 * 109.46670 * 60.00498 * 1 2 3 28 28 H 1.09002 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46952 * 89.97331 * 6 5 4 30 30 H 1.08997 * 109.46595 * 209.97311 * 6 5 4 31 31 H 1.08997 * 109.46772 * 329.97298 * 6 5 4 32 32 H 1.08000 * 126.24366 * 180.27173 * 7 5 4 33 33 H 1.09004 * 109.87531 * 300.21113 * 12 11 9 34 34 H 1.09000 * 109.87938 * 61.37366 * 12 11 9 35 35 H 1.08997 * 110.72381 * 140.55486 * 13 12 11 36 36 H 1.09003 * 110.72277 * 263.65209 * 13 12 11 37 37 H 0.97005 * 120.00220 * 25.00616 * 16 14 13 38 38 H 0.97000 * 120.00338 * 180.02562 * 20 19 17 39 39 H 1.09001 * 110.36478 * 274.97629 * 25 11 9 40 40 H 1.08998 * 110.36859 * 37.30006 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 -0.0009 6 6 2.1704 4.8222 -0.0009 7 6 3.6386 2.8012 0.0049 8 6 3.4452 1.4335 0.0000 9 6 4.4956 0.4015 0.0008 10 8 4.1912 -0.7760 0.0018 11 7 5.7942 0.7618 0.0006 12 6 6.3006 2.1421 0.0001 13 6 7.8417 2.0649 -0.0204 14 6 8.1111 0.6516 -0.6014 15 1 8.0563 0.6597 -1.6899 16 7 9.4043 0.1347 -0.1466 17 6 10.0670 -0.8037 -0.8920 18 1 9.6365 -1.1623 -1.8152 19 6 11.2920 -1.2938 -0.4609 20 7 11.9292 -2.1953 -1.1776 21 14 12.0363 -0.6739 1.1364 22 1 11.5788 -1.5296 2.2605 23 1 13.5176 -0.7263 1.0454 24 1 11.6042 0.7269 1.3730 25 6 6.9424 -0.1629 0.0074 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.1064 5.1798 1.0267 30 1 2.9827 5.3364 -0.5147 31 1 1.2305 5.0232 -0.5149 32 1 4.5904 3.3115 0.0103 33 1 5.9439 2.6674 -0.8859 34 1 5.9672 2.6596 0.8997 35 1 8.2578 2.8347 -0.6702 36 1 8.2458 2.1537 0.9881 37 1 9.7910 0.4570 0.6825 38 1 12.7851 -2.5381 -0.8762 39 1 7.1808 -0.4641 1.0274 40 1 6.7289 -1.0373 -0.6073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969560913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:09 Heat of formation + Delta-G solvation = 15.897811 kcal Electronic energy + Delta-G solvation = -23570.777004 eV Core-core repulsion = 20002.032692 eV Total energy + Delta-G solvation = -3568.744313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60228 -40.64726 -39.37049 -38.52233 -36.03110 -33.90014 -33.56624 -31.92384 -31.15145 -29.17147 -28.83102 -27.21633 -25.70482 -24.39661 -22.68776 -22.19325 -21.66677 -20.80618 -19.77649 -18.27622 -18.04164 -17.55188 -17.23309 -16.96667 -16.32451 -16.21183 -15.92684 -15.84366 -15.42810 -15.19118 -14.73152 -14.37344 -14.30003 -13.85356 -13.69811 -13.51666 -13.42216 -13.27160 -12.95118 -12.86736 -12.41651 -12.21536 -12.15940 -12.14093 -11.87165 -11.82119 -11.51604 -11.05894 -10.94484 -10.24183 -9.77550 -9.47691 -9.29884 -8.01592 -5.37907 0.46069 1.07759 1.26043 1.40243 1.46155 1.52667 1.94758 2.37431 2.40104 2.50641 3.27419 3.33868 3.52017 3.72792 3.80428 3.92681 4.21752 4.23504 4.28723 4.30692 4.31445 4.38097 4.50807 4.52534 4.56008 4.59946 4.67945 4.72111 4.80896 4.89580 5.02195 5.24575 5.30794 5.40102 5.77946 5.85162 6.13884 6.22126 6.47124 6.65636 7.07713 7.27009 7.80642 8.01253 9.19769 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.003409 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.209807 B = 8211.630544 C = 8956.513155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.292 3.708 4 N -0.367 5.367 5 N -0.339 5.339 6 C 0.086 3.914 7 C 0.145 3.855 8 C -0.326 4.326 9 C 0.597 3.403 10 O -0.597 6.597 11 N -0.612 5.612 12 C 0.091 3.909 13 C -0.129 4.129 14 C 0.168 3.832 15 H 0.064 0.936 16 N -0.736 5.736 17 C -0.239 4.239 18 H 0.053 0.947 19 C -0.064 4.064 20 N -0.985 5.985 21 Si 0.959 3.041 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.237 1.237 25 C 0.092 3.908 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.372 0.628 38 H 0.258 0.742 39 H 0.054 0.946 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.208 23.038 5.070 31.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.087 3.913 4 N -0.208 5.208 5 N -0.119 5.119 6 C -0.053 4.053 7 C -0.009 4.009 8 C -0.341 4.341 9 C 0.388 3.612 10 O -0.479 6.479 11 N -0.346 5.346 12 C -0.030 4.030 13 C -0.167 4.167 14 C 0.057 3.943 15 H 0.082 0.918 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.071 0.929 19 C -0.255 4.255 20 N -0.635 5.635 21 Si 0.785 3.215 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.161 1.161 25 C -0.034 4.034 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.115 0.885 32 H 0.261 0.739 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.206 0.794 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -22.491 22.696 4.881 32.323 hybrid contribution 1.137 -1.364 0.625 1.883 sum -21.353 21.332 5.506 30.681 Atomic orbital electron populations 1.23231 0.75891 1.05147 1.02426 1.86469 1.23933 1.21754 1.88388 1.20706 0.90656 0.85558 0.94389 1.77241 1.14486 0.94548 1.34483 1.48266 1.02636 1.07774 1.53266 1.22571 1.06481 0.70323 1.05877 1.24301 0.92937 0.90622 0.93078 1.19610 0.90663 0.93970 1.29888 1.17250 0.81074 0.87309 0.75538 1.90764 1.82422 1.20884 1.53808 1.48253 1.03827 1.09583 1.72902 1.22689 0.94161 0.82162 1.04033 1.22948 0.94288 0.96197 1.03272 1.21452 0.82594 0.92873 0.97340 0.91811 1.42547 1.20154 1.48821 1.26300 1.19029 1.00636 1.14127 1.03194 0.92937 1.25592 0.98105 0.99249 1.02599 1.69905 1.17260 1.34576 1.41723 0.85365 0.77062 0.79865 0.79209 1.21062 1.22346 1.16069 1.22921 0.86546 0.93723 1.00213 0.91851 0.91896 0.86389 0.88278 0.84887 0.88541 0.73934 0.87847 0.87578 0.86997 0.89512 0.79394 0.93295 0.92757 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.70 113.37 1.21 1.79 16 2 O -0.30 -9.77 9.98 -86.72 -0.87 -10.64 16 3 C 0.29 8.72 7.85 85.70 0.67 9.39 16 4 N -0.37 -8.71 11.90 -169.99 -2.02 -10.73 16 5 N -0.34 -4.98 3.98 -367.78 -1.46 -6.45 16 6 C 0.09 0.22 11.44 127.77 1.46 1.68 16 7 C 0.14 2.22 9.96 84.31 0.84 3.06 16 8 C -0.33 -9.11 6.11 -20.08 -0.12 -9.24 16 9 C 0.60 21.44 7.84 86.61 0.68 22.12 16 10 O -0.60 -28.10 16.69 1.02 0.02 -28.08 16 11 N -0.61 -18.62 3.33 -815.87 -2.71 -21.33 16 12 C 0.09 1.54 4.98 86.73 0.43 1.97 16 13 C -0.13 -2.70 6.60 31.78 0.21 -2.49 16 14 C 0.17 5.89 3.71 46.38 0.17 6.06 16 15 H 0.06 2.40 8.09 -2.39 -0.02 2.38 16 16 N -0.74 -32.48 5.05 -316.38 -1.60 -34.07 16 17 C -0.24 -13.47 10.44 84.03 0.88 -12.59 16 18 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 19 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 20 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 21 Si 0.96 44.17 27.74 68.60 1.90 46.07 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.24 -9.28 6.52 99.48 0.65 -8.64 16 25 C 0.09 3.49 6.60 86.86 0.57 4.06 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 -0.02 8.14 -2.39 -0.02 -0.03 16 30 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 32 H 0.25 1.23 4.42 -2.91 -0.01 1.22 16 33 H 0.10 1.09 6.88 -2.38 -0.02 1.07 16 34 H 0.11 1.04 6.97 -2.39 -0.02 1.02 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.71 8.01 -2.39 -0.02 1.69 16 37 H 0.37 15.21 5.63 -92.70 -0.52 14.69 16 38 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.03 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -91.87 334.63 1.52 -90.35 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.49 Total: 15.49 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 7.47 Total: 22.54 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -7.49 Total: -135.73 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.85 Total: -38.72 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Total: -91.87 1.52 -90.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969560913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.244 kcal (2) G-P(sol) polarization free energy of solvation -91.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds