Wall clock time and date at job start Tue Mar 31 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46823 * 2 1 4 4 N 1.46500 * 109.47159 * 239.99770 * 2 1 3 5 5 C 1.34770 * 120.00030 * 85.00027 * 4 2 1 6 6 O 1.21739 * 120.00107 * 355.08736 * 5 4 2 7 7 C 1.46376 * 120.00325 * 175.08188 * 5 4 2 8 8 C 1.36727 * 126.82022 * 5.03761 * 7 5 4 9 9 N 1.33224 * 107.96025 * 179.87172 * 8 7 5 10 10 C 1.31540 * 109.76035 * 0.40318 * 9 8 7 11 11 O 1.35205 * 125.48902 * 179.77172 * 10 9 8 12 12 N 1.34942 * 109.01624 * 359.74944 * 10 9 8 13 13 C 1.46499 * 126.54133 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47014 * 119.99551 * 2 1 3 15 15 C 1.53502 * 114.20893 * 300.00474 * 14 2 1 16 16 N 1.47069 * 87.98271 * 220.34293 * 15 14 2 17 17 C 1.36934 * 136.05572 * 207.07863 * 16 15 14 18 18 H 1.08003 * 119.99791 * 6.19681 * 17 16 15 19 19 C 1.38808 * 120.00109 * 186.19742 * 17 16 15 20 20 N 1.31621 * 120.00012 * 195.09627 * 19 17 16 21 21 Si 1.86797 * 119.99985 * 15.09165 * 19 17 16 22 22 H 1.48502 * 109.47216 * 269.99940 * 21 19 17 23 23 H 1.48494 * 109.47148 * 30.00478 * 21 19 17 24 24 H 1.48501 * 109.46860 * 150.00230 * 21 19 17 25 25 C 1.47065 * 87.88630 * 27.34009 * 16 15 14 26 26 H 1.09003 * 109.47052 * 60.00668 * 1 2 3 27 27 H 1.09004 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46965 * 300.00337 * 1 2 3 29 29 H 0.96996 * 119.99980 * 264.99429 * 4 2 1 30 30 H 1.07991 * 126.02095 * 359.97438 * 8 7 5 31 31 H 0.96701 * 114.00150 * 269.97381 * 11 10 9 32 32 H 1.09003 * 109.47022 * 272.50934 * 13 12 10 33 33 H 1.08994 * 109.47622 * 32.51257 * 13 12 10 34 34 H 1.09007 * 109.46581 * 152.51776 * 13 12 10 35 35 H 1.09001 * 113.41294 * 73.20149 * 14 2 1 36 36 H 1.08999 * 113.46803 * 105.56079 * 15 14 2 37 37 H 1.09000 * 113.51663 * 335.13274 * 15 14 2 38 38 H 0.97000 * 119.99936 * 354.94771 * 20 19 17 39 39 H 1.09007 * 113.46740 * 87.43523 * 25 16 15 40 40 H 1.09003 * 113.46734 * 217.87522 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.7741 1.1378 -2.4356 7 6 2.7356 -0.6783 -3.5236 8 6 3.1106 -1.9895 -3.6209 9 7 3.5969 -2.1879 -4.8453 10 6 3.5567 -1.0639 -5.5273 11 8 3.9758 -0.9043 -6.8028 12 7 3.0294 -0.0959 -4.7490 13 6 2.8095 1.3028 -5.1252 14 6 2.0400 -0.7211 1.2493 15 6 1.5897 -0.0845 2.5715 16 7 2.9389 -0.3444 3.0960 17 6 3.4925 -0.5601 4.3297 18 1 2.8565 -0.6595 5.1970 19 6 4.8709 -0.6508 4.4657 20 7 5.3922 -1.1456 5.5684 21 14 5.9860 -0.0709 3.0838 22 1 6.2524 -1.1995 2.1561 23 1 5.3236 1.0328 2.3434 24 1 7.2684 0.4149 3.6535 25 6 3.4329 -0.2641 1.7131 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.2492 -1.6318 -1.1525 30 1 3.0259 -2.7337 -2.8430 31 1 4.9059 -0.6519 -6.8826 32 1 3.7110 1.8802 -4.9201 33 1 2.5748 1.3607 -6.1880 34 1 1.9790 1.7082 -4.5470 35 1 1.9118 -1.8028 1.2076 36 1 0.8094 -0.6492 3.0816 37 1 1.3543 0.9763 2.4854 38 1 4.8177 -1.3786 6.3144 39 1 3.6837 0.7494 1.3998 40 1 4.2228 -0.9819 1.4920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970276423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:37 Heat of formation + Delta-G solvation = 54.063264 kcal Electronic energy + Delta-G solvation = -23637.307830 eV Core-core repulsion = 20070.218496 eV Total energy + Delta-G solvation = -3567.089334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53626 -39.87818 -38.54341 -37.66052 -35.30016 -34.27562 -32.50806 -31.31364 -29.07300 -27.77219 -27.39841 -25.41628 -24.25504 -23.14429 -22.00590 -20.95084 -20.49349 -19.42762 -18.93434 -17.66669 -17.45823 -16.82927 -16.40763 -15.90127 -15.22776 -14.95443 -14.83639 -14.53827 -14.14395 -13.88158 -13.68770 -13.28244 -13.14910 -13.03533 -12.92934 -12.53906 -12.30020 -11.94476 -11.84683 -11.53079 -10.97355 -10.74890 -10.59098 -10.40655 -10.15129 -10.10315 -9.96817 -9.51272 -9.22154 -9.14734 -8.76512 -8.69654 -7.19778 -6.32280 -3.23722 0.90496 1.84305 2.34369 3.06519 3.16583 3.39713 3.45662 3.47310 3.61410 4.36309 4.44826 4.57815 4.66284 4.73355 4.84614 4.87104 5.01692 5.07204 5.23222 5.39923 5.42128 5.52832 5.64764 5.72147 5.81921 5.96242 6.04535 6.11223 6.13633 6.21464 6.25105 6.29617 6.36926 6.50791 6.89323 7.10801 7.11884 7.34065 7.48313 8.03004 8.22450 8.96076 9.49418 10.35559 11.18183 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.003817 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.670814 B = 7334.208418 C = 8099.898531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.705 5.705 5 C 0.596 3.404 6 O -0.547 6.547 7 C -0.076 4.076 8 C 0.055 3.945 9 N -0.487 5.487 10 C 0.393 3.607 11 O -0.441 6.441 12 N -0.428 5.428 13 C 0.062 3.938 14 C -0.140 4.140 15 C 0.131 3.869 16 N -0.625 5.625 17 C -0.306 4.306 18 H 0.082 0.918 19 C -0.023 4.023 20 N -0.932 5.932 21 Si 1.062 2.938 22 H -0.293 1.293 23 H -0.282 1.282 24 H -0.295 1.295 25 C 0.108 3.892 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.403 0.597 30 H 0.187 0.813 31 H 0.405 0.595 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.044 0.956 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 2.236 -22.846 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.109 0.891 4 N -0.355 5.355 5 C 0.382 3.618 6 O -0.426 6.426 7 C -0.192 4.192 8 C -0.100 4.100 9 N -0.215 5.215 10 C 0.094 3.906 11 O -0.241 6.241 12 N -0.121 5.121 13 C -0.079 4.079 14 C -0.160 4.160 15 C 0.004 3.996 16 N -0.352 5.352 17 C -0.432 4.432 18 H 0.100 0.900 19 C -0.222 4.222 20 N -0.574 5.574 21 Si 0.893 3.107 22 H -0.221 1.221 23 H -0.209 1.209 24 H -0.223 1.223 25 C -0.018 4.018 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.238 0.762 30 H 0.204 0.796 31 H 0.263 0.737 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.451 2.462 -23.710 24.453 hybrid contribution -1.176 0.516 0.754 1.489 sum -6.628 2.978 -22.956 24.078 Atomic orbital electron populations 1.22130 0.94945 1.02202 1.02457 1.21078 0.94121 0.97291 0.82304 0.89132 1.45762 1.66599 1.14194 1.08924 1.16588 0.78038 0.85472 0.81673 1.90792 1.50732 1.17116 1.83939 1.20658 1.15015 0.95276 0.88249 1.22600 0.99255 0.93553 0.94548 1.70313 1.22726 1.23217 1.05234 1.20234 1.01068 0.83952 0.85350 1.84799 1.33255 1.89934 1.16159 1.45641 1.45488 1.10681 1.10249 1.22338 1.05081 0.77768 1.02749 1.23569 0.99169 1.00435 0.92813 1.22274 0.90366 0.97024 0.89892 1.46196 1.03962 1.83223 1.01868 1.20141 0.92246 1.47341 0.83471 0.90003 1.25738 0.94401 0.99054 1.03055 1.70901 1.37847 1.43039 1.05642 0.83790 0.75724 0.76655 0.74503 1.22094 1.20861 1.22289 1.22747 0.94594 0.98349 0.86106 0.92411 0.92375 0.91139 0.76187 0.79559 0.73740 0.90068 0.89335 0.87105 0.88151 0.93401 0.94507 0.92837 0.93808 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.29 37.16 0.35 -1.46 16 2 C 0.16 2.03 2.43 -67.93 -0.17 1.86 16 3 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 4 N -0.70 -8.01 5.06 -55.20 -0.28 -8.29 16 5 C 0.60 7.57 7.73 -12.99 -0.10 7.47 16 6 O -0.55 -8.26 14.50 5.15 0.07 -8.18 16 7 C -0.08 -0.88 6.92 -81.97 -0.57 -1.45 16 8 C 0.06 0.60 11.36 -17.49 -0.20 0.40 16 9 N -0.49 -5.99 11.22 -14.62 -0.16 -6.15 16 10 C 0.39 4.25 9.01 -89.59 -0.81 3.44 16 11 O -0.44 -3.50 13.53 -17.31 -0.23 -3.73 16 12 N -0.43 -4.56 3.20 -122.12 -0.39 -4.95 16 13 C 0.06 0.50 10.76 59.85 0.64 1.15 16 14 C -0.14 -2.15 3.67 -89.97 -0.33 -2.48 16 15 C 0.13 2.42 7.33 -8.50 -0.06 2.36 16 16 N -0.62 -14.99 3.64 -184.58 -0.67 -15.66 16 17 C -0.31 -8.73 11.03 -15.06 -0.17 -8.90 16 18 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 19 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 20 N -0.93 -29.35 13.70 55.49 0.76 -28.59 16 21 Si 1.06 26.58 25.47 -169.99 -4.33 22.25 16 22 H -0.29 -7.00 6.96 56.52 0.39 -6.61 16 23 H -0.28 -6.60 5.62 56.52 0.32 -6.28 16 24 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 25 C 0.11 2.17 5.18 -8.37 -0.04 2.13 16 26 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.78 7.48 -51.93 -0.39 0.39 16 29 H 0.40 3.63 7.53 -40.82 -0.31 3.32 16 30 H 0.19 1.43 7.45 -52.49 -0.39 1.03 16 31 H 0.41 1.11 9.06 45.56 0.41 1.52 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.11 1.06 6.28 -51.92 -0.33 0.74 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.66 8.10 -51.93 -0.42 0.23 16 38 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 39 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 40 H 0.05 1.06 6.07 -51.93 -0.31 0.74 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -36.73 332.07 -6.46 -43.19 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.68 Total: 1.40 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.55 Total: 3.72 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.75 Total: -63.65 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.16 Total: -11.91 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -4.33 Total: 22.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.73 -6.46 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970276423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.254 kcal (2) G-P(sol) polarization free energy of solvation -36.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds