Wall clock time and date at job start Tue Mar 31 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.99923 * 2 1 4 4 C 1.54308 * 109.77774 * 121.16182 * 2 1 3 5 5 H 1.09003 * 110.92597 * 23.46575 * 4 2 1 6 6 N 1.46501 * 110.59258 * 260.14188 * 4 2 1 7 7 C 1.36941 * 120.00173 * 160.18633 * 6 4 2 8 8 H 1.07997 * 119.99593 * 0.02562 * 7 6 4 9 9 C 1.38807 * 119.99876 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00157 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00089 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47468 * 89.99967 * 11 9 7 13 13 H 1.48506 * 109.47029 * 209.99810 * 11 9 7 14 14 H 1.48501 * 109.47107 * 329.99416 * 11 9 7 15 15 C 1.55160 * 102.86722 * 141.88237 * 4 2 1 16 16 C 1.54911 * 101.57917 * 324.30279 * 15 4 2 17 17 N 1.47022 * 109.88105 * 238.90968 * 2 1 3 18 18 C 1.34775 * 125.65044 * 61.67651 * 17 2 1 19 19 O 1.21739 * 119.99945 * 358.57466 * 18 17 2 20 20 C 1.46381 * 120.00609 * 178.85120 * 18 17 2 21 21 C 1.36726 * 126.81773 * 7.82489 * 20 18 17 22 22 N 1.33224 * 107.95577 * 179.83882 * 21 20 18 23 23 C 1.31538 * 109.76560 * 0.43413 * 22 21 20 24 24 O 1.35204 * 125.49424 * 179.76379 * 23 22 21 25 25 N 1.34940 * 109.01230 * 359.73352 * 23 22 21 26 26 C 1.46500 * 126.54557 * 179.97438 * 25 23 22 27 27 H 1.09000 * 109.47400 * 179.64080 * 1 2 3 28 28 H 1.09008 * 109.46860 * 299.63911 * 1 2 3 29 29 H 1.09003 * 109.47623 * 59.63638 * 1 2 3 30 30 H 0.96998 * 119.99718 * 340.19491 * 6 4 2 31 31 H 0.97003 * 120.00524 * 180.02562 * 10 9 7 32 32 H 1.08994 * 111.00534 * 206.22928 * 15 4 2 33 33 H 1.09000 * 111.03609 * 82.39280 * 15 4 2 34 34 H 1.08994 * 110.36855 * 278.17005 * 16 15 4 35 35 H 1.09001 * 110.36645 * 155.84552 * 16 15 4 36 36 H 1.07995 * 126.02232 * 359.97438 * 21 20 18 37 37 H 0.96699 * 113.99872 * 269.96312 * 24 23 22 38 38 H 1.09000 * 109.46812 * 274.84473 * 26 25 23 39 39 H 1.08993 * 109.47054 * 34.84026 * 26 25 23 40 40 H 1.08996 * 109.47484 * 154.84468 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0521 -0.7514 1.2425 5 1 1.3050 -1.4514 1.6167 6 7 2.4474 0.1950 2.2886 7 6 2.5496 -0.2243 3.5883 8 1 2.3393 -1.2527 3.8419 9 6 2.9237 0.6726 4.5794 10 7 3.0225 0.2696 5.8285 11 14 3.2868 2.4517 4.1407 12 1 2.0383 3.2499 4.2362 13 1 4.2967 2.9976 5.0828 14 1 3.8145 2.5218 2.7543 15 6 3.2889 -1.5102 0.6930 16 6 2.8190 -1.8763 -0.7370 17 7 2.0299 -0.7140 -1.1840 18 6 1.8084 -0.3611 -2.4657 19 8 1.1214 0.6114 -2.7193 20 6 2.3889 -1.1506 -3.5531 21 6 3.0463 -2.3440 -3.4388 22 7 3.4124 -2.7299 -4.6602 23 6 3.0274 -1.8347 -5.5437 24 8 3.2387 -1.9063 -6.8771 25 7 2.3868 -0.8336 -4.9046 26 6 1.8013 0.3602 -5.5195 27 1 -0.3634 -1.0276 -0.0064 28 1 -0.3633 0.5083 0.8933 29 1 -0.3634 0.5195 -0.8867 30 1 2.6366 1.1187 2.0607 31 1 3.2835 0.8964 6.5213 32 1 3.4897 -2.4066 1.2797 33 1 4.1643 -0.8615 0.6626 34 1 2.1970 -2.7711 -0.7145 35 1 3.6775 -2.0264 -1.3916 36 1 3.2336 -2.8804 -2.5204 37 1 4.0669 -1.4995 -7.1665 38 1 2.5706 1.1238 -5.6351 39 1 1.3950 0.1030 -6.4976 40 1 1.0029 0.7423 -4.8835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986655152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:30 Heat of formation + Delta-G solvation = 29.387669 kcal Electronic energy + Delta-G solvation = -24034.554963 eV Core-core repulsion = 20466.395614 eV Total energy + Delta-G solvation = -3568.159349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52837 -39.98975 -37.82886 -37.44173 -34.67509 -34.10124 -32.05936 -31.20104 -30.16678 -28.75744 -27.40670 -25.54990 -23.97043 -23.01510 -21.85807 -21.70786 -20.27414 -19.40936 -18.79226 -17.67069 -17.05322 -16.97657 -16.25635 -16.03381 -15.16019 -14.85199 -14.49251 -14.25813 -14.03836 -13.91244 -13.43038 -13.10144 -13.02588 -12.93057 -12.77230 -12.46050 -12.38305 -12.03692 -11.77341 -11.30683 -11.30124 -10.92172 -10.69585 -10.47389 -10.41437 -10.12620 -10.08312 -9.86587 -9.66587 -9.01393 -8.83043 -8.57303 -7.38681 -5.85472 -3.23194 0.96038 1.86569 2.38441 2.99066 3.16385 3.32786 3.35978 3.41460 3.49515 4.28170 4.48660 4.51773 4.69208 4.82224 4.85668 4.97906 5.03538 5.14455 5.26510 5.32215 5.44775 5.51687 5.56904 5.67302 5.73454 5.82451 5.92483 6.08793 6.14136 6.16728 6.26650 6.45107 6.47333 6.51426 6.75030 7.15601 7.46210 7.50412 7.88090 8.05817 8.32812 9.09243 9.81770 9.99526 11.32196 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.003608 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.344301 B = 7758.279482 C = 8074.289255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.181 3.819 5 H 0.077 0.923 6 N -0.739 5.739 7 C -0.249 4.249 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.155 4.155 16 C 0.080 3.920 17 N -0.593 5.593 18 C 0.607 3.393 19 O -0.549 6.549 20 C -0.069 4.069 21 C 0.039 3.961 22 N -0.487 5.487 23 C 0.391 3.609 24 O -0.440 6.440 25 N -0.429 5.429 26 C 0.061 3.939 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.363 0.637 31 H 0.261 0.739 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.200 0.800 37 H 0.404 0.596 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 -2.707 -22.702 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.381 5.381 7 C -0.378 4.378 8 H 0.111 0.889 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.196 4.196 16 C -0.043 4.043 17 N -0.325 5.325 18 C 0.396 3.604 19 O -0.429 6.429 20 C -0.185 4.185 21 C -0.115 4.115 22 N -0.216 5.216 23 C 0.092 3.908 24 O -0.241 6.241 25 N -0.122 5.122 26 C -0.081 4.081 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.196 0.804 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.217 0.783 37 H 0.261 0.739 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.668 -3.137 -23.077 23.298 hybrid contribution 0.449 2.281 -0.282 2.342 sum -0.220 -0.855 -23.359 23.376 Atomic orbital electron populations 1.22083 0.94354 1.02195 1.02879 1.21967 0.94858 0.96598 0.83996 0.90500 1.21241 0.94029 0.91373 0.86341 0.90540 1.42697 1.82750 1.08082 1.04555 1.19015 1.39907 0.97265 0.81617 0.88908 1.24656 1.01251 0.97601 0.95151 1.69691 1.53744 1.34597 0.99631 0.86602 0.78143 0.86613 0.77455 1.20919 1.21635 1.20325 1.23565 1.00995 1.02259 0.92761 1.22958 0.95174 0.88586 0.97573 1.48126 1.51449 1.28859 1.04069 1.16149 0.80339 0.83278 0.80653 1.90769 1.40413 1.28563 1.83150 1.20554 1.12921 1.01365 0.83639 1.23399 0.98213 0.93667 0.96214 1.70352 1.24461 1.26925 0.99850 1.20260 0.98884 0.86494 0.85169 1.84804 1.45743 1.80235 1.13329 1.45618 1.42187 1.18197 1.06182 1.22347 1.00906 0.84834 0.99971 0.92572 0.90923 0.91820 0.80369 0.92903 0.89696 0.90521 0.90553 0.89740 0.78332 0.73882 0.90239 0.89360 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.10 37.16 0.34 -2.01 16 2 C 0.13 2.03 3.21 -66.96 -0.21 1.81 16 3 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 4 C 0.18 3.12 3.11 -66.10 -0.21 2.92 16 5 H 0.08 1.33 7.84 -51.93 -0.41 0.93 16 6 N -0.74 -16.15 5.05 -51.66 -0.26 -16.41 16 7 C -0.25 -6.55 10.46 -15.06 -0.16 -6.71 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -28.15 13.97 55.49 0.78 -27.37 16 11 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 15 C -0.15 -2.25 6.76 -24.58 -0.17 -2.42 16 16 C 0.08 0.92 5.27 -2.53 -0.01 0.91 16 17 N -0.59 -8.29 3.07 -164.66 -0.50 -8.79 16 18 C 0.61 8.90 7.61 -12.99 -0.10 8.80 16 19 O -0.55 -9.18 13.78 5.15 0.07 -9.11 16 20 C -0.07 -0.89 6.87 -81.97 -0.56 -1.45 16 21 C 0.04 0.47 10.20 -17.49 -0.18 0.29 16 22 N -0.49 -6.30 11.22 -14.62 -0.16 -6.47 16 23 C 0.39 4.45 9.01 -89.60 -0.81 3.64 16 24 O -0.44 -3.66 13.53 -17.31 -0.23 -3.89 16 25 N -0.43 -4.93 3.20 -122.13 -0.39 -5.32 16 26 C 0.06 0.53 10.84 59.85 0.65 1.18 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 29 H 0.06 0.98 6.84 -51.93 -0.35 0.63 16 30 H 0.36 7.97 5.36 -40.82 -0.22 7.75 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 35 H 0.08 0.84 5.32 -51.93 -0.28 0.56 16 36 H 0.20 1.91 4.71 -52.49 -0.25 1.66 16 37 H 0.40 1.19 9.06 45.56 0.41 1.60 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 1.19 6.14 -51.93 -0.32 0.87 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -33.89 326.42 -6.37 -40.26 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.35 Total: 8.41 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.51 Total: 7.15 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.55 Total: -64.35 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.16 Total: -13.00 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.89 -6.37 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986655152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.651 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds