Wall clock time and date at job start Tue Mar 31 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.41659 * 2 1 4 4 C 1.54912 * 110.36207 * 237.70589 * 2 1 3 5 5 C 1.55161 * 101.57856 * 204.15231 * 4 2 1 6 6 H 1.09003 * 110.71847 * 277.13298 * 5 4 2 7 7 N 1.46503 * 110.71958 * 154.04720 * 5 4 2 8 8 C 1.36938 * 119.99912 * 155.00027 * 7 5 4 9 9 H 1.07996 * 120.00278 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99425 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00391 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99548 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46790 * 59.99842 * 12 10 8 14 14 H 1.48497 * 109.46955 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47246 * 300.00049 * 12 10 8 16 16 C 1.54329 * 103.02156 * 35.30555 * 5 4 2 17 17 N 1.47015 * 107.26786 * 338.14550 * 16 5 4 18 18 C 1.34781 * 125.65123 * 178.85312 * 17 16 5 19 19 O 1.21734 * 120.00050 * 184.14743 * 18 17 16 20 20 C 1.46375 * 119.99549 * 4.41799 * 18 17 16 21 21 C 1.36722 * 126.83142 * 354.11735 * 20 18 17 22 22 N 1.33220 * 107.96542 * 180.02562 * 21 20 18 23 23 C 1.31535 * 109.76330 * 0.02562 * 22 21 20 24 24 O 1.35202 * 125.49613 * 180.02562 * 23 22 21 25 25 N 1.34946 * 109.01371 * 359.72466 * 23 22 21 26 26 C 1.46499 * 126.54567 * 180.30615 * 25 23 22 27 27 H 1.08999 * 109.46690 * 299.15493 * 1 2 3 28 28 H 1.09002 * 109.46983 * 59.15433 * 1 2 3 29 29 H 1.08996 * 109.47238 * 179.15831 * 1 2 3 30 30 H 1.09001 * 111.01100 * 322.22528 * 4 2 1 31 31 H 1.09001 * 111.00565 * 86.08068 * 4 2 1 32 32 H 0.97005 * 119.99991 * 334.99801 * 7 5 4 33 33 H 0.96996 * 119.99790 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.99363 * 218.66072 * 16 5 4 35 35 H 1.09000 * 109.77483 * 97.49848 * 16 5 4 36 36 H 1.08003 * 126.01661 * 0.02684 * 21 20 18 37 37 H 0.96702 * 113.99955 * 89.96825 * 24 23 22 38 38 H 1.09003 * 109.46791 * 274.93306 * 26 25 23 39 39 H 1.08999 * 109.47033 * 34.93680 * 26 25 23 40 40 H 1.08998 * 109.47342 * 154.94238 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2277 5 6 3.4777 -1.1998 -0.7342 6 1 4.1945 -0.3903 -0.8724 7 7 3.9267 -2.4106 -1.4262 8 6 5.2652 -2.6723 -1.5493 9 1 5.9898 -1.9861 -1.1367 10 6 5.6905 -3.8198 -2.2046 11 7 4.8073 -4.6564 -2.7070 12 14 7.5164 -4.1766 -2.3731 13 1 8.1257 -4.2873 -1.0234 14 1 7.7055 -5.4534 -3.1074 15 1 8.1693 -3.0730 -3.1220 16 6 3.2525 -1.4725 0.7680 17 7 2.0431 -0.7385 1.1682 18 6 1.4973 -0.7363 2.4005 19 8 0.4490 -0.1508 2.6009 20 6 2.1681 -1.4331 3.4992 21 6 3.2842 -2.2180 3.4120 22 7 3.5702 -2.6630 4.6347 23 6 2.6892 -2.1991 5.4942 24 8 2.6796 -2.4521 6.8223 25 7 1.8002 -1.4246 4.8378 26 6 0.6626 -0.7126 5.4252 27 1 -0.3633 0.5007 0.8975 28 1 -0.3633 0.5269 -0.8823 29 1 -0.3633 -1.0275 -0.0151 30 1 1.4510 -1.6481 -1.4409 31 1 2.1398 -0.1264 -2.1002 32 1 3.2758 -3.0268 -1.7972 33 1 5.1046 -5.4580 -3.1651 34 1 4.1081 -1.1190 1.3433 35 1 3.1090 -2.5406 0.9315 36 1 3.8368 -2.4383 2.5106 37 1 3.1858 -1.8171 7.3473 38 1 -0.1925 -1.3853 5.4906 39 1 0.9281 -0.3642 6.4233 40 1 0.4057 0.1415 4.7986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989289213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:08 Heat of formation + Delta-G solvation = 23.104824 kcal Electronic energy + Delta-G solvation = -24147.236144 eV Core-core repulsion = 20578.804350 eV Total energy + Delta-G solvation = -3568.431793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30866 -39.85731 -37.63175 -37.26172 -34.40313 -34.02212 -32.19126 -31.43502 -28.93891 -28.41397 -27.22549 -25.65105 -24.14508 -23.13680 -21.90473 -21.08833 -20.26952 -19.16988 -18.60393 -17.33319 -16.85284 -16.66976 -16.21434 -15.89269 -15.02889 -14.60198 -14.54141 -13.98816 -13.91811 -13.69353 -13.39462 -13.19237 -12.86671 -12.78851 -12.72547 -12.32183 -12.09986 -11.95097 -11.79561 -11.27871 -11.00234 -10.74452 -10.72460 -10.36288 -10.23828 -10.08985 -9.87886 -9.77259 -9.53777 -9.01377 -8.61409 -8.37797 -7.12885 -5.86302 -3.17994 1.15584 2.04862 2.60814 3.17602 3.35038 3.41162 3.46402 3.46780 3.67865 4.43892 4.54635 4.60879 4.93167 5.00535 5.03111 5.11734 5.18241 5.29271 5.38321 5.43733 5.54867 5.60866 5.79947 5.82519 5.85648 6.04007 6.08451 6.14593 6.30689 6.35718 6.38210 6.42569 6.47225 6.64715 6.79796 7.34400 7.60931 7.65664 7.73700 8.22251 8.30822 9.43011 9.95474 10.30050 11.35331 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.004683 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.916513 B = 5977.009599 C = 7570.466639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.254 4.254 9 H 0.073 0.927 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.059 3.941 17 N -0.593 5.593 18 C 0.609 3.391 19 O -0.556 6.556 20 C -0.075 4.075 21 C 0.050 3.950 22 N -0.486 5.486 23 C 0.389 3.611 24 O -0.440 6.440 25 N -0.432 5.432 26 C 0.070 3.930 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.388 0.612 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.202 0.798 37 H 0.401 0.599 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 10.713 13.388 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.088 0.912 7 N -0.351 5.351 8 C -0.384 4.384 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.211 1.211 16 C -0.066 4.066 17 N -0.326 5.326 18 C 0.398 3.602 19 O -0.438 6.438 20 C -0.190 4.190 21 C -0.104 4.104 22 N -0.214 5.214 23 C 0.089 3.911 24 O -0.240 6.240 25 N -0.125 5.125 26 C -0.072 4.072 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.222 0.778 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.219 0.781 37 H 0.258 0.742 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.696 10.057 13.779 18.714 hybrid contribution 0.442 0.233 0.052 0.503 sum -7.253 10.290 13.831 18.703 Atomic orbital electron populations 1.22192 0.94098 1.02686 1.03083 1.21926 0.94934 0.95207 0.84115 0.90611 1.23209 0.97938 1.00411 0.96145 1.21179 0.93295 0.91316 0.88204 0.91186 1.42380 1.05328 1.22469 1.64874 1.19212 0.83242 1.04819 1.31160 0.90863 1.24767 0.97709 0.97255 1.00463 1.69645 1.32470 1.13492 1.41903 0.86271 0.84835 0.77298 0.77786 1.20983 1.21667 1.21149 1.23772 0.85200 0.96865 1.00790 1.48192 1.28482 1.47909 1.07971 1.16168 0.83496 0.79779 0.80713 1.90698 1.22855 1.47155 1.83068 1.20562 1.02472 1.11522 0.84475 1.23555 0.94968 0.95645 0.96254 1.70388 1.24409 1.25557 1.01046 1.20321 0.89854 0.95061 0.85822 1.84829 1.74645 1.53905 1.10665 1.45592 1.23943 1.35899 1.07090 1.22211 0.86929 0.98611 0.99442 0.89792 0.92287 0.92684 0.90377 0.89929 0.77790 0.93229 0.91325 0.90050 0.78130 0.74170 0.90196 0.90018 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.65 37.16 0.32 -1.83 16 2 C 0.14 1.94 3.78 -66.41 -0.25 1.68 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -2.03 6.13 -24.58 -0.15 -2.19 16 5 C 0.17 3.02 3.60 -66.09 -0.24 2.78 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 7 N -0.71 -16.14 5.16 -51.64 -0.27 -16.41 16 8 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 11 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 12 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.06 0.95 4.76 -3.07 -0.01 0.94 16 17 N -0.59 -8.97 3.24 -164.68 -0.53 -9.50 16 18 C 0.61 9.62 7.62 -12.99 -0.10 9.52 16 19 O -0.56 -9.24 12.42 5.16 0.06 -9.18 16 20 C -0.08 -1.15 6.89 -81.97 -0.56 -1.71 16 21 C 0.05 0.79 10.36 -17.50 -0.18 0.61 16 22 N -0.49 -7.89 11.22 -14.62 -0.16 -8.05 16 23 C 0.39 5.33 9.01 -89.59 -0.81 4.52 16 24 O -0.44 -4.53 13.53 -17.30 -0.23 -4.76 16 25 N -0.43 -5.74 3.20 -122.12 -0.39 -6.13 16 26 C 0.07 0.68 10.71 59.85 0.64 1.32 16 27 H 0.08 1.21 5.87 -51.93 -0.31 0.91 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.39 9.51 7.76 -40.82 -0.32 9.19 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.07 1.04 6.96 -51.93 -0.36 0.68 16 35 H 0.08 1.44 6.82 -51.93 -0.35 1.08 16 36 H 0.20 3.13 4.43 -52.48 -0.23 2.89 16 37 H 0.40 1.87 9.06 45.56 0.41 2.28 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.11 1.15 6.38 -51.93 -0.33 0.82 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -32.03 327.99 -6.87 -38.90 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -4.40 Total: 11.02 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.59 Total: 8.78 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.63 Total: -66.09 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.17 Total: -13.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.03 -6.87 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989289213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.007 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds