Wall clock time and date at job start Tue Mar 31 2020 03:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.41659 * 2 1 4 4 C 1.54912 * 110.36207 * 237.70589 * 2 1 3 5 5 C 1.55161 * 101.57856 * 204.15231 * 4 2 1 6 6 H 1.09003 * 110.71847 * 277.13298 * 5 4 2 7 7 N 1.46503 * 110.71958 * 154.04720 * 5 4 2 8 8 C 1.36938 * 119.99912 * 155.00027 * 7 5 4 9 9 H 1.07996 * 120.00278 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99425 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00391 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99548 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46790 * 59.99842 * 12 10 8 14 14 H 1.48497 * 109.46955 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47246 * 300.00049 * 12 10 8 16 16 C 1.54329 * 103.02156 * 35.30555 * 5 4 2 17 17 N 1.47015 * 107.26786 * 338.14550 * 16 5 4 18 18 C 1.34781 * 125.65123 * 178.85312 * 17 16 5 19 19 O 1.21734 * 120.00050 * 184.14743 * 18 17 16 20 20 C 1.46375 * 119.99549 * 4.41799 * 18 17 16 21 21 C 1.36722 * 126.83142 * 354.11735 * 20 18 17 22 22 N 1.33220 * 107.96542 * 180.02562 * 21 20 18 23 23 C 1.31535 * 109.76330 * 0.02562 * 22 21 20 24 24 O 1.35202 * 125.49613 * 180.02562 * 23 22 21 25 25 N 1.34946 * 109.01371 * 359.72466 * 23 22 21 26 26 C 1.46499 * 126.54567 * 180.30615 * 25 23 22 27 27 H 1.08999 * 109.46690 * 299.15493 * 1 2 3 28 28 H 1.09002 * 109.46983 * 59.15433 * 1 2 3 29 29 H 1.08996 * 109.47238 * 179.15831 * 1 2 3 30 30 H 1.09001 * 111.01100 * 322.22528 * 4 2 1 31 31 H 1.09001 * 111.00565 * 86.08068 * 4 2 1 32 32 H 0.97005 * 119.99991 * 334.99801 * 7 5 4 33 33 H 0.96996 * 119.99790 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.99363 * 218.66072 * 16 5 4 35 35 H 1.09000 * 109.77483 * 97.49848 * 16 5 4 36 36 H 1.08003 * 126.01661 * 0.02684 * 21 20 18 37 37 H 0.96702 * 113.99955 * 89.96825 * 24 23 22 38 38 H 1.09003 * 109.46791 * 274.93306 * 26 25 23 39 39 H 1.08999 * 109.47033 * 34.93680 * 26 25 23 40 40 H 1.08998 * 109.47342 * 154.94238 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2277 5 6 3.4777 -1.1998 -0.7342 6 1 4.1945 -0.3903 -0.8724 7 7 3.9267 -2.4106 -1.4262 8 6 5.2652 -2.6723 -1.5493 9 1 5.9898 -1.9861 -1.1367 10 6 5.6905 -3.8198 -2.2046 11 7 4.8073 -4.6564 -2.7070 12 14 7.5164 -4.1766 -2.3731 13 1 8.1257 -4.2873 -1.0234 14 1 7.7055 -5.4534 -3.1074 15 1 8.1693 -3.0730 -3.1220 16 6 3.2525 -1.4725 0.7680 17 7 2.0431 -0.7385 1.1682 18 6 1.4973 -0.7363 2.4005 19 8 0.4490 -0.1508 2.6009 20 6 2.1681 -1.4331 3.4992 21 6 3.2842 -2.2180 3.4120 22 7 3.5702 -2.6630 4.6347 23 6 2.6892 -2.1991 5.4942 24 8 2.6796 -2.4521 6.8223 25 7 1.8002 -1.4246 4.8378 26 6 0.6626 -0.7126 5.4252 27 1 -0.3633 0.5007 0.8975 28 1 -0.3633 0.5269 -0.8823 29 1 -0.3633 -1.0275 -0.0151 30 1 1.4510 -1.6481 -1.4409 31 1 2.1398 -0.1264 -2.1002 32 1 3.2758 -3.0268 -1.7972 33 1 5.1046 -5.4580 -3.1651 34 1 4.1081 -1.1190 1.3433 35 1 3.1090 -2.5406 0.9315 36 1 3.8368 -2.4383 2.5106 37 1 3.1858 -1.8171 7.3473 38 1 -0.1925 -1.3853 5.4906 39 1 0.9281 -0.3642 6.4233 40 1 0.4057 0.1415 4.7986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989289213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:07 Heat of formation + Delta-G solvation = -2.407384 kcal Electronic energy + Delta-G solvation = -24148.342436 eV Core-core repulsion = 20578.804350 eV Total energy + Delta-G solvation = -3569.538086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.39611 -41.08500 -38.75907 -38.33274 -35.98609 -35.17052 -33.43688 -33.11741 -30.20149 -29.87675 -28.13380 -26.86555 -25.87308 -24.46341 -23.01143 -22.28324 -21.60863 -20.32137 -19.57573 -19.16166 -17.93239 -17.87424 -17.41170 -17.03173 -16.57851 -15.95909 -15.62120 -15.38069 -15.29326 -15.02135 -14.72336 -14.37715 -14.25290 -13.81416 -13.64583 -13.40961 -13.28914 -13.14433 -13.04148 -12.86727 -12.75030 -12.31492 -12.09906 -12.07902 -11.68316 -11.52814 -11.33682 -10.95163 -10.91906 -10.68818 -9.79064 -9.55775 -9.02603 -7.90222 -5.19898 0.05220 1.03367 1.49969 1.54310 1.56167 1.61384 2.02528 2.14674 2.61061 2.76563 3.28383 3.41141 3.75885 3.82043 3.85625 3.90263 3.93789 4.21911 4.23733 4.27750 4.33554 4.53300 4.55531 4.58481 4.76923 4.78891 4.88775 4.89730 5.14810 5.17728 5.25650 5.28599 5.37184 5.52312 5.58275 5.60344 6.30097 6.40140 6.52173 6.64365 7.00806 7.38691 8.10373 8.33268 9.32496 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.004683 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.916513 B = 5977.009599 C = 7570.466639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.096 0.904 4 C -0.127 4.127 5 C 0.166 3.834 6 H 0.079 0.921 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.084 0.916 10 C -0.068 4.068 11 N -0.968 5.968 12 Si 0.966 3.034 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.276 1.276 16 C 0.075 3.925 17 N -0.593 5.593 18 C 0.609 3.391 19 O -0.565 6.565 20 C -0.089 4.089 21 C 0.042 3.958 22 N -0.522 5.522 23 C 0.403 3.597 24 O -0.437 6.437 25 N -0.430 5.430 26 C 0.066 3.934 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.196 0.804 37 H 0.428 0.572 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 12.499 14.807 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.166 4.166 5 C 0.055 3.945 6 H 0.097 0.903 7 N -0.362 5.362 8 C -0.374 4.374 9 H 0.102 0.898 10 C -0.261 4.261 11 N -0.618 5.618 12 Si 0.796 3.204 13 H -0.205 1.205 14 H -0.228 1.228 15 H -0.202 1.202 16 C -0.051 4.051 17 N -0.326 5.326 18 C 0.398 3.602 19 O -0.448 6.448 20 C -0.205 4.205 21 C -0.112 4.112 22 N -0.251 5.251 23 C 0.102 3.898 24 O -0.242 6.242 25 N -0.123 5.123 26 C -0.074 4.074 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.212 0.788 37 H 0.290 0.710 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.803 11.924 15.255 20.875 hybrid contribution 0.402 -0.246 -0.239 0.528 sum -7.401 11.678 15.016 20.412 Atomic orbital electron populations 1.22104 0.93463 1.01907 1.03728 1.22068 0.95397 0.95730 0.82849 0.88584 1.23116 0.95734 1.00396 0.97318 1.21393 0.95022 0.89507 0.88548 0.90325 1.42517 1.04222 1.23860 1.65568 1.19631 0.84740 1.04133 1.28847 0.89821 1.25480 1.01167 0.97821 1.01624 1.69797 1.33998 1.14035 1.43941 0.85325 0.80829 0.76637 0.77647 1.20491 1.22819 1.20246 1.23385 0.86068 0.95933 0.99692 1.48191 1.28142 1.47876 1.08345 1.16234 0.83369 0.79663 0.80891 1.90695 1.23153 1.47651 1.83260 1.20507 1.02655 1.11966 0.85384 1.23474 0.95386 0.96098 0.96274 1.70336 1.26141 1.27087 1.01548 1.20352 0.88924 0.93711 0.86764 1.84797 1.75243 1.55070 1.09042 1.45767 1.24473 1.35713 1.06326 1.22447 0.86099 0.98003 1.00861 0.90812 0.89863 0.94182 0.91603 0.88079 0.79220 0.94141 0.90363 0.92031 0.78792 0.71001 0.89743 0.86355 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.65 71.98 0.62 -3.18 16 2 C 0.14 3.62 3.78 45.47 0.17 3.79 16 3 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.13 -3.56 6.13 31.99 0.20 -3.36 16 5 C 0.17 5.64 3.60 46.18 0.17 5.81 16 6 H 0.08 2.57 8.09 -2.39 -0.02 2.55 16 7 N -0.72 -32.90 5.16 -317.30 -1.64 -34.54 16 8 C -0.24 -12.32 9.96 84.03 0.84 -11.49 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 11 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 12 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 16 C 0.07 2.37 4.76 86.73 0.41 2.78 16 17 N -0.59 -17.36 3.24 -793.13 -2.57 -19.93 16 18 C 0.61 18.71 7.62 86.36 0.66 19.37 16 19 O -0.57 -18.15 12.42 -4.46 -0.06 -18.21 16 20 C -0.09 -2.67 6.89 39.80 0.27 -2.39 16 21 C 0.04 1.32 10.36 84.13 0.87 2.19 16 22 N -0.52 -16.64 11.22 -313.65 -3.52 -20.16 16 23 C 0.40 10.35 9.01 179.99 1.62 11.97 16 24 O -0.44 -7.81 13.53 -84.82 -1.15 -8.95 16 25 N -0.43 -10.73 3.20 -652.00 -2.09 -12.82 16 26 C 0.07 1.14 10.71 127.77 1.37 2.51 16 27 H 0.07 2.01 5.87 -2.39 -0.01 2.00 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 2.03 7.93 -2.39 -0.02 2.02 16 31 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.38 18.80 7.76 -92.70 -0.72 18.08 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.08 2.32 6.96 -2.39 -0.02 2.30 16 35 H 0.06 2.22 6.82 -2.39 -0.02 2.20 16 36 H 0.20 6.19 4.43 -2.91 -0.01 6.17 16 37 H 0.43 2.55 9.06 -74.06 -0.67 1.88 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.92 6.38 -2.39 -0.02 1.91 16 Total: -1.00 -69.00 327.99 -1.34 -70.33 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.29 Total: 29.92 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 7.67 Total: 24.75 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -9.54 Total: -144.17 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.20 Total: -27.16 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.00 -1.34 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989289213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.926 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds