Wall clock time and date at job start Tue Mar 31 2020 03:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.99551 * 2 1 4 4 C 1.54340 * 109.98758 * 238.96626 * 2 1 3 5 5 C 1.55151 * 103.01876 * 218.66352 * 4 2 1 6 6 H 1.08998 * 111.03652 * 153.40031 * 5 4 2 7 7 N 1.46508 * 111.00486 * 277.23065 * 5 4 2 8 8 C 1.36931 * 120.00034 * 198.65272 * 7 5 4 9 9 H 1.08001 * 120.00492 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99789 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00196 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47243 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47155 * 119.99654 * 12 10 8 15 15 H 1.48503 * 109.47143 * 239.99900 * 12 10 8 16 16 C 1.54902 * 101.58414 * 35.31039 * 5 4 2 17 17 N 1.47022 * 109.88545 * 121.10345 * 2 1 3 18 18 C 1.34773 * 125.64693 * 298.38970 * 17 2 1 19 19 O 1.21743 * 120.00097 * 0.69546 * 18 17 2 20 20 C 1.46379 * 120.00340 * 180.96528 * 18 17 2 21 21 C 1.36721 * 126.81870 * 351.60955 * 20 18 17 22 22 N 1.33227 * 107.96005 * 179.97438 * 21 20 18 23 23 C 1.31537 * 109.76044 * 359.97438 * 22 21 20 24 24 O 1.35206 * 125.49167 * 180.02562 * 23 22 21 25 25 N 1.34948 * 109.01575 * 359.76344 * 23 22 21 26 26 C 1.46497 * 126.54498 * 180.23511 * 25 23 22 27 27 H 1.09005 * 109.46901 * 300.35251 * 1 2 3 28 28 H 1.08999 * 109.47655 * 60.34958 * 1 2 3 29 29 H 1.09005 * 109.47296 * 180.35597 * 1 2 3 30 30 H 1.09001 * 110.84697 * 100.19521 * 4 2 1 31 31 H 1.08995 * 110.51616 * 336.98199 * 4 2 1 32 32 H 0.97001 * 119.99848 * 18.65805 * 7 5 4 33 33 H 0.97004 * 120.00405 * 180.02562 * 11 10 8 34 34 H 1.09001 * 110.36753 * 204.15460 * 16 5 4 35 35 H 1.08997 * 110.46169 * 81.87206 * 16 5 4 36 36 H 1.07996 * 126.02645 * 359.97438 * 21 20 18 37 37 H 0.96703 * 114.00183 * 90.02400 * 24 23 22 38 38 H 1.09002 * 109.47207 * 275.00320 * 26 25 23 39 39 H 1.08996 * 109.47156 * 35.00828 * 26 25 23 40 40 H 1.09001 * 109.47036 * 155.00468 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5183 -0.6917 6 1 3.4812 -2.4154 -1.2792 7 7 4.4699 -0.6561 -0.6467 8 6 5.7188 -1.2115 -0.5637 9 1 5.8314 -2.2851 -0.5319 10 6 6.8402 -0.3945 -0.5205 11 7 6.7031 0.9139 -0.5598 12 14 8.5438 -1.1521 -0.4066 13 1 8.4265 -2.6322 -0.3768 14 1 9.3476 -0.7425 -1.5862 15 1 9.2118 -0.6840 0.8344 16 6 2.8099 -1.8826 0.7365 17 7 2.0301 -0.7142 1.1838 18 6 1.8076 -0.3623 2.4656 19 8 1.1304 0.6171 2.7192 20 6 2.3850 -1.1542 3.5529 21 6 3.0306 -2.3540 3.4392 22 7 3.4015 -2.7381 4.6598 23 6 3.0231 -1.8398 5.5429 24 8 3.2371 -1.9108 6.8761 25 7 2.3918 -0.8331 4.9033 26 6 1.8195 0.3676 5.5174 27 1 -0.3633 0.5193 0.8869 28 1 -0.3634 0.5084 -0.8931 29 1 -0.3634 -1.0277 0.0064 30 1 2.3596 -0.0449 -2.0192 31 1 1.3052 -1.4404 -1.6198 32 1 4.3689 0.3082 -0.6755 33 1 7.4867 1.4849 -0.5299 34 1 3.6656 -2.0413 1.3929 35 1 2.1806 -2.7722 0.7130 36 1 3.2086 -2.8951 2.5217 37 1 4.0681 -1.5080 7.1630 38 1 0.8103 0.1508 5.8676 39 1 2.4385 0.6748 6.3603 40 1 1.7839 1.1705 4.7811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989289216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:18 Heat of formation + Delta-G solvation = 23.376271 kcal Electronic energy + Delta-G solvation = -24554.838901 eV Core-core repulsion = 20986.418879 eV Total energy + Delta-G solvation = -3568.420022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.19887 -39.73048 -37.56246 -37.17636 -34.24784 -33.88260 -32.05522 -31.36767 -28.84189 -28.46507 -27.13293 -25.71640 -23.97141 -23.34369 -21.79200 -21.17353 -19.96221 -19.04812 -18.49506 -17.32849 -16.73431 -16.71988 -16.00775 -15.76387 -14.89444 -14.64370 -14.40628 -13.97074 -13.87643 -13.69317 -13.23439 -13.05730 -12.84061 -12.71586 -12.64272 -12.25854 -12.19479 -11.90889 -11.68454 -11.20365 -10.95028 -10.75645 -10.58587 -10.34563 -10.19217 -10.01753 -9.77233 -9.75431 -9.62638 -9.06567 -8.49409 -8.24914 -7.07101 -5.85334 -3.15768 1.29197 2.16617 2.72464 3.30084 3.39055 3.45581 3.47258 3.52451 3.79644 4.51200 4.59217 4.73145 4.99969 5.06614 5.11234 5.15362 5.27150 5.37564 5.47130 5.49274 5.55590 5.62156 5.76304 5.82764 5.91950 5.99028 6.13669 6.18061 6.35657 6.37208 6.40735 6.45452 6.57004 6.65612 6.74913 7.45063 7.63206 7.78639 7.83042 8.31741 8.37246 9.44170 9.98571 10.32717 11.36626 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.006078 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.211054 B = 4605.657556 C = 6143.547275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.246 4.246 9 H 0.074 0.926 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.906 3.094 13 H -0.278 1.278 14 H -0.291 1.291 15 H -0.292 1.292 16 C 0.050 3.950 17 N -0.581 5.581 18 C 0.610 3.390 19 O -0.559 6.559 20 C -0.065 4.065 21 C 0.045 3.955 22 N -0.487 5.487 23 C 0.387 3.613 24 O -0.442 6.442 25 N -0.430 5.430 26 C 0.071 3.929 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.200 0.800 37 H 0.402 0.598 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 -3.220 7.168 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.094 0.906 4 C -0.176 4.176 5 C 0.057 3.943 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.377 4.377 9 H 0.092 0.908 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.737 3.263 13 H -0.203 1.203 14 H -0.218 1.218 15 H -0.219 1.219 16 C -0.076 4.076 17 N -0.312 5.312 18 C 0.399 3.601 19 O -0.440 6.440 20 C -0.181 4.181 21 C -0.108 4.108 22 N -0.216 5.216 23 C 0.088 3.912 24 O -0.242 6.242 25 N -0.123 5.123 26 C -0.071 4.071 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.216 0.784 37 H 0.259 0.741 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.467 -3.624 7.784 14.325 hybrid contribution 1.089 1.016 0.283 1.516 sum -10.378 -2.608 8.067 13.401 Atomic orbital electron populations 1.22147 0.95206 1.01916 1.02566 1.21518 0.93620 0.96730 0.84133 0.90555 1.23057 0.98208 1.00071 0.96272 1.21344 0.86985 0.94605 0.91410 0.90786 1.42349 1.00229 1.05239 1.87308 1.19267 0.83295 0.91890 1.43260 0.90756 1.24758 0.97980 0.95315 1.02423 1.69674 1.28860 1.02142 1.56915 0.86146 0.84662 0.78343 0.77197 1.20311 1.21823 1.21927 1.23929 0.95045 0.86997 1.01630 1.47950 1.51081 1.28514 1.03656 1.16104 0.80032 0.83196 0.80806 1.90746 1.41502 1.28303 1.83484 1.20516 1.13099 1.00997 0.83489 1.23407 0.97520 0.93850 0.96059 1.70339 1.23930 1.27355 0.99944 1.20257 0.99405 0.86453 0.85076 1.84795 1.45362 1.80559 1.13529 1.45565 1.42906 1.17608 1.06272 1.22204 0.99189 0.85982 0.99771 0.91542 0.91850 0.92724 0.89583 0.90517 0.78033 0.93471 0.88700 0.91882 0.78351 0.74059 0.90239 0.89958 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.11 37.16 0.34 -1.77 16 2 C 0.14 2.19 3.46 -66.94 -0.23 1.96 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.14 -1.95 6.06 -24.89 -0.15 -2.10 16 5 C 0.17 2.91 3.69 -65.78 -0.24 2.66 16 6 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 7 N -0.71 -16.26 5.27 -51.35 -0.27 -16.53 16 8 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 12 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 C 0.05 0.78 4.96 -2.53 -0.01 0.77 16 17 N -0.58 -9.66 3.06 -164.65 -0.50 -10.17 16 18 C 0.61 10.91 7.60 -12.99 -0.10 10.81 16 19 O -0.56 -10.74 13.93 5.15 0.07 -10.67 16 20 C -0.07 -1.11 6.86 -81.98 -0.56 -1.67 16 21 C 0.05 0.75 10.19 -17.50 -0.18 0.57 16 22 N -0.49 -8.27 11.22 -14.62 -0.16 -8.44 16 23 C 0.39 5.81 9.01 -89.59 -0.81 5.00 16 24 O -0.44 -5.07 13.53 -17.31 -0.23 -5.30 16 25 N -0.43 -6.48 3.20 -122.12 -0.39 -6.87 16 26 C 0.07 0.83 10.69 59.85 0.64 1.47 16 27 H 0.07 0.99 6.85 -51.93 -0.36 0.64 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 32 H 0.39 9.69 7.82 -40.82 -0.32 9.37 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.10 1.66 5.32 -51.93 -0.28 1.39 16 35 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 36 H 0.20 2.96 4.72 -52.49 -0.25 2.71 16 37 H 0.40 2.56 9.06 45.56 0.41 2.98 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.11 1.43 6.44 -51.93 -0.33 1.10 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -33.28 330.46 -6.81 -40.09 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.45 Total: 11.80 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -1.55 Total: 10.89 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.61 Total: -68.47 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.16 Total: -15.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.28 -6.81 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989289216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.467 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds