Wall clock time and date at job start Tue Mar 31 2020 03:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.99551 * 2 1 4 4 C 1.54340 * 109.98758 * 238.96626 * 2 1 3 5 5 C 1.55151 * 103.01876 * 218.66352 * 4 2 1 6 6 H 1.08998 * 111.03652 * 153.40031 * 5 4 2 7 7 N 1.46508 * 111.00486 * 277.23065 * 5 4 2 8 8 C 1.36931 * 120.00034 * 198.65272 * 7 5 4 9 9 H 1.08001 * 120.00492 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99789 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00196 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47243 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47155 * 119.99654 * 12 10 8 15 15 H 1.48503 * 109.47143 * 239.99900 * 12 10 8 16 16 C 1.54902 * 101.58414 * 35.31039 * 5 4 2 17 17 N 1.47022 * 109.88545 * 121.10345 * 2 1 3 18 18 C 1.34773 * 125.64693 * 298.38970 * 17 2 1 19 19 O 1.21743 * 120.00097 * 0.69546 * 18 17 2 20 20 C 1.46379 * 120.00340 * 180.96528 * 18 17 2 21 21 C 1.36721 * 126.81870 * 351.60955 * 20 18 17 22 22 N 1.33227 * 107.96005 * 179.97438 * 21 20 18 23 23 C 1.31537 * 109.76044 * 359.97438 * 22 21 20 24 24 O 1.35206 * 125.49167 * 180.02562 * 23 22 21 25 25 N 1.34948 * 109.01575 * 359.76344 * 23 22 21 26 26 C 1.46497 * 126.54498 * 180.23511 * 25 23 22 27 27 H 1.09005 * 109.46901 * 300.35251 * 1 2 3 28 28 H 1.08999 * 109.47655 * 60.34958 * 1 2 3 29 29 H 1.09005 * 109.47296 * 180.35597 * 1 2 3 30 30 H 1.09001 * 110.84697 * 100.19521 * 4 2 1 31 31 H 1.08995 * 110.51616 * 336.98199 * 4 2 1 32 32 H 0.97001 * 119.99848 * 18.65805 * 7 5 4 33 33 H 0.97004 * 120.00405 * 180.02562 * 11 10 8 34 34 H 1.09001 * 110.36753 * 204.15460 * 16 5 4 35 35 H 1.08997 * 110.46169 * 81.87206 * 16 5 4 36 36 H 1.07996 * 126.02645 * 359.97438 * 21 20 18 37 37 H 0.96703 * 114.00183 * 90.02400 * 24 23 22 38 38 H 1.09002 * 109.47207 * 275.00320 * 26 25 23 39 39 H 1.08996 * 109.47156 * 35.00828 * 26 25 23 40 40 H 1.09001 * 109.47036 * 155.00468 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5183 -0.6917 6 1 3.4812 -2.4154 -1.2792 7 7 4.4699 -0.6561 -0.6467 8 6 5.7188 -1.2115 -0.5637 9 1 5.8314 -2.2851 -0.5319 10 6 6.8402 -0.3945 -0.5205 11 7 6.7031 0.9139 -0.5598 12 14 8.5438 -1.1521 -0.4066 13 1 8.4265 -2.6322 -0.3768 14 1 9.3476 -0.7425 -1.5862 15 1 9.2118 -0.6840 0.8344 16 6 2.8099 -1.8826 0.7365 17 7 2.0301 -0.7142 1.1838 18 6 1.8076 -0.3623 2.4656 19 8 1.1304 0.6171 2.7192 20 6 2.3850 -1.1542 3.5529 21 6 3.0306 -2.3540 3.4392 22 7 3.4015 -2.7381 4.6598 23 6 3.0231 -1.8398 5.5429 24 8 3.2371 -1.9108 6.8761 25 7 2.3918 -0.8331 4.9033 26 6 1.8195 0.3676 5.5174 27 1 -0.3633 0.5193 0.8869 28 1 -0.3634 0.5084 -0.8931 29 1 -0.3634 -1.0277 0.0064 30 1 2.3596 -0.0449 -2.0192 31 1 1.3052 -1.4404 -1.6198 32 1 4.3689 0.3082 -0.6755 33 1 7.4867 1.4849 -0.5299 34 1 3.6656 -2.0413 1.3929 35 1 2.1806 -2.7722 0.7130 36 1 3.2086 -2.8951 2.5217 37 1 4.0681 -1.5080 7.1630 38 1 0.8103 0.1508 5.8676 39 1 2.4385 0.6748 6.3603 40 1 1.7839 1.1705 4.7811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989289216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:17 Heat of formation + Delta-G solvation = -3.631251 kcal Electronic energy + Delta-G solvation = -24556.010035 eV Core-core repulsion = 20986.418879 eV Total energy + Delta-G solvation = -3569.591156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.37632 -41.02756 -38.78878 -38.31512 -35.83441 -35.17311 -33.36106 -33.02728 -30.17804 -29.94103 -28.17502 -26.92076 -25.73833 -24.72180 -22.95832 -22.42892 -21.27619 -20.28984 -19.56423 -19.20704 -18.01297 -17.90677 -17.33036 -16.95161 -16.46876 -16.06011 -15.55083 -15.46722 -15.18921 -15.11456 -14.75652 -14.24051 -14.18615 -13.80150 -13.69456 -13.46322 -13.20385 -13.14189 -13.11561 -12.88469 -12.69685 -12.20246 -12.11580 -11.89686 -11.60949 -11.49092 -11.39458 -11.01848 -10.90742 -10.89743 -9.78442 -9.53088 -8.94191 -7.91093 -5.18735 0.09094 1.04289 1.49160 1.50933 1.53967 1.59471 2.05484 2.23803 2.58756 2.77582 3.35051 3.42496 3.74030 3.82763 3.89004 3.92368 3.97186 4.15675 4.21907 4.24181 4.40672 4.52208 4.54545 4.73363 4.77531 4.80138 4.89510 4.97377 5.13794 5.20662 5.24401 5.31567 5.39254 5.48612 5.54847 5.60620 6.30595 6.47567 6.50836 6.64121 7.04440 7.37793 8.13227 8.34100 9.32598 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.006078 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.211054 B = 4605.657556 C = 6143.547275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.138 3.862 3 H 0.046 0.954 4 C -0.121 4.121 5 C 0.157 3.843 6 H 0.092 0.908 7 N -0.725 5.725 8 C -0.228 4.228 9 H 0.087 0.913 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.963 3.037 13 H -0.259 1.259 14 H -0.297 1.297 15 H -0.304 1.304 16 C 0.057 3.943 17 N -0.583 5.583 18 C 0.602 3.398 19 O -0.582 6.582 20 C -0.091 4.091 21 C 0.046 3.954 22 N -0.517 5.517 23 C 0.399 3.601 24 O -0.437 6.437 25 N -0.433 5.433 26 C 0.068 3.932 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.370 0.630 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.210 0.790 37 H 0.427 0.573 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 -5.150 7.469 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.035 3.965 3 H 0.064 0.936 4 C -0.160 4.160 5 C 0.047 3.953 6 H 0.110 0.890 7 N -0.363 5.363 8 C -0.359 4.359 9 H 0.105 0.895 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.793 3.207 13 H -0.183 1.183 14 H -0.225 1.225 15 H -0.232 1.232 16 C -0.067 4.067 17 N -0.314 5.314 18 C 0.392 3.608 19 O -0.465 6.465 20 C -0.207 4.207 21 C -0.108 4.108 22 N -0.246 5.246 23 C 0.099 3.901 24 O -0.241 6.241 25 N -0.126 5.126 26 C -0.073 4.073 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.201 0.799 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.288 0.712 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.502 -5.605 8.090 15.911 hybrid contribution 1.323 1.576 0.269 2.075 sum -11.179 -4.029 8.360 14.528 Atomic orbital electron populations 1.22042 0.93105 1.02901 1.02564 1.21613 0.95228 0.95335 0.84301 0.93623 1.23000 0.97536 1.00118 0.95305 1.21681 0.86152 0.94754 0.92705 0.89028 1.42551 1.01264 1.05120 1.87408 1.19708 0.84363 0.92377 1.39494 0.89478 1.25470 1.01330 0.95710 1.04317 1.69828 1.28943 1.03433 1.60074 0.85216 0.80866 0.78518 0.76081 1.18342 1.22496 1.23214 1.23856 0.95187 0.88043 0.99639 1.48061 1.50873 1.28781 1.03665 1.16331 0.79957 0.83092 0.81414 1.90723 1.42637 1.29266 1.83895 1.20512 1.14445 1.01478 0.84251 1.23615 0.96948 0.93729 0.96511 1.70333 1.25304 1.28539 1.00422 1.20370 0.98006 0.85780 0.85933 1.84765 1.47140 1.80849 1.11374 1.45755 1.42758 1.18322 1.05792 1.22381 1.00597 0.84359 0.99964 0.93749 0.89679 0.91092 0.90199 0.86569 0.79855 0.94465 0.90525 0.87888 0.77344 0.71188 0.89000 0.86691 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.11 71.98 0.66 -2.95 16 2 C 0.14 4.10 3.46 45.35 0.16 4.26 16 3 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -3.16 6.06 31.79 0.19 -2.96 16 5 C 0.16 5.07 3.69 46.38 0.17 5.24 16 6 H 0.09 2.69 8.13 -2.39 -0.02 2.67 16 7 N -0.73 -32.90 5.27 -316.39 -1.67 -34.56 16 8 C -0.23 -11.58 9.98 84.03 0.84 -10.74 16 9 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 11 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 12 Si 0.96 44.98 29.55 68.60 2.03 47.01 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 16 C 0.06 1.69 4.96 86.85 0.43 2.12 16 17 N -0.58 -18.93 3.06 -793.02 -2.43 -21.36 16 18 C 0.60 21.56 7.60 86.36 0.66 22.22 16 19 O -0.58 -22.78 13.93 -4.48 -0.06 -22.84 16 20 C -0.09 -3.05 6.86 39.80 0.27 -2.78 16 21 C 0.05 1.47 10.19 84.13 0.86 2.33 16 22 N -0.52 -16.94 11.22 -313.65 -3.52 -20.46 16 23 C 0.40 11.34 9.01 179.99 1.62 12.96 16 24 O -0.44 -8.94 13.53 -84.87 -1.15 -10.09 16 25 N -0.43 -12.63 3.20 -652.00 -2.09 -14.72 16 26 C 0.07 1.52 10.69 127.77 1.37 2.89 16 27 H 0.04 1.29 6.85 -2.38 -0.02 1.27 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.12 2.16 7.84 -2.39 -0.02 2.14 16 32 H 0.37 18.97 7.82 -92.71 -0.72 18.25 16 33 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.08 2.59 5.32 -2.39 -0.01 2.58 16 35 H 0.10 2.26 8.02 -2.39 -0.02 2.24 16 36 H 0.21 5.94 4.72 -2.91 -0.01 5.93 16 37 H 0.43 4.22 9.06 -74.05 -0.67 3.55 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.34 6.44 -2.39 -0.02 2.32 16 Total: -1.00 -73.48 330.46 -1.22 -74.70 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.30 Total: 31.67 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 7.69 Total: 28.83 kcal Atomic # 7 Polarization: -139.87 SS G_CDS: -9.42 Total: -149.29 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.21 Total: -32.93 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.48 -1.22 -74.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989289216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.071 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds