Wall clock time and date at job start Tue Mar 31 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.87569 * 2 1 4 4 C 1.54316 * 110.01465 * 121.10451 * 2 1 3 5 5 C 1.55160 * 102.94268 * 141.68173 * 4 2 1 6 6 H 1.08999 * 111.00447 * 82.61518 * 5 4 2 7 7 N 1.46502 * 111.00224 * 206.42392 * 5 4 2 8 8 C 1.36944 * 120.00018 * 204.99552 * 7 5 4 9 9 H 1.07993 * 119.99709 * 0.02562 * 8 7 5 10 10 C 1.38804 * 119.99988 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00065 * 180.02562 * 10 8 7 12 12 Si 1.86810 * 120.00314 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.46818 * 89.99962 * 12 10 8 14 14 H 1.48498 * 109.47046 * 210.00231 * 12 10 8 15 15 H 1.48495 * 109.46869 * 330.00088 * 12 10 8 16 16 C 1.54910 * 101.58122 * 324.49825 * 5 4 2 17 17 N 1.47026 * 109.87945 * 238.99346 * 2 1 3 18 18 C 1.34771 * 125.65100 * 61.21790 * 17 2 1 19 19 O 1.21631 * 120.00146 * 0.02562 * 18 17 2 20 20 C 1.47253 * 120.00195 * 179.97438 * 18 17 2 21 21 C 1.36247 * 126.16677 * 179.71369 * 20 18 17 22 22 N 1.36337 * 106.88574 * 179.84716 * 21 20 18 23 23 C 1.46500 * 126.19678 * 180.15851 * 22 21 20 24 24 C 1.36170 * 107.60309 * 0.41990 * 22 21 20 25 25 O 1.35458 * 125.55197 * 179.73974 * 24 22 21 26 26 N 1.30696 * 108.89482 * 359.73697 * 24 22 21 27 27 H 1.09000 * 109.46733 * 179.55744 * 1 2 3 28 28 H 1.09005 * 109.46849 * 299.55629 * 1 2 3 29 29 H 1.08994 * 109.46873 * 59.55402 * 1 2 3 30 30 H 1.08997 * 110.72381 * 260.04431 * 4 2 1 31 31 H 1.09002 * 110.72355 * 23.31836 * 4 2 1 32 32 H 0.97005 * 120.00220 * 25.00616 * 7 5 4 33 33 H 0.97000 * 120.00338 * 180.02562 * 11 10 8 34 34 H 1.09001 * 110.36852 * 278.17238 * 16 5 4 35 35 H 1.08998 * 110.36449 * 155.84885 * 16 5 4 36 36 H 1.08004 * 126.55373 * 359.97438 * 21 20 18 37 37 H 1.09006 * 109.46954 * 270.28594 * 23 22 21 38 38 H 1.08996 * 109.47324 * 30.28244 * 23 22 21 39 39 H 1.09000 * 109.47520 * 150.28889 * 23 22 21 40 40 H 0.96702 * 113.99747 * 270.02851 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2415 5 6 3.2919 -1.5108 0.6890 6 1 4.1684 -0.8636 0.6569 7 7 3.5611 -2.7160 1.4773 8 6 4.8256 -3.2402 1.5164 9 1 5.6244 -2.7650 0.9665 10 6 5.0806 -4.3824 2.2628 11 7 6.2961 -4.8860 2.3008 12 14 3.6987 -5.2049 3.2134 13 1 3.0384 -6.2170 2.3504 14 1 4.2548 -5.8695 4.4193 15 1 2.7046 -4.1819 3.6260 16 6 2.8177 -1.8761 -0.7397 17 7 2.0300 -0.7123 -1.1851 18 6 1.8012 -0.3625 -2.4663 19 8 1.1294 0.6197 -2.7180 20 6 2.3656 -1.1687 -3.5617 21 6 2.2103 -0.9347 -4.8949 22 7 2.8961 -1.9132 -5.5513 23 6 3.0126 -2.0626 -7.0040 24 6 3.4483 -2.7300 -4.6120 25 8 4.2034 -3.8254 -4.8667 26 7 3.1311 -2.2848 -3.4249 27 1 -0.3633 -1.0277 -0.0079 28 1 -0.3633 0.5070 0.8940 29 1 -0.3633 0.5207 -0.8859 30 1 2.3558 -0.0454 2.0189 31 1 1.3105 -1.4473 1.6177 32 1 2.8437 -3.1427 1.9714 33 1 6.4742 -5.6844 2.8220 34 1 2.1937 -2.7696 -0.7154 35 1 3.6742 -2.0283 -1.3964 36 1 1.6524 -0.1271 -5.3455 37 1 2.1947 -2.6819 -7.3723 38 1 2.9655 -1.0808 -7.4751 39 1 3.9641 -2.5362 -7.2455 40 1 3.6944 -4.6436 -4.9480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989397287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:24 Heat of formation + Delta-G solvation = -7.832071 kcal Electronic energy + Delta-G solvation = -24030.797916 eV Core-core repulsion = 20461.024598 eV Total energy + Delta-G solvation = -3569.773318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.22067 -40.97686 -38.77585 -38.19103 -36.07276 -35.24597 -33.49360 -32.69074 -30.50029 -30.15045 -28.10699 -26.68773 -25.64302 -24.52028 -22.56987 -22.21549 -21.81141 -20.24195 -19.64058 -19.27177 -18.25744 -17.55233 -17.38444 -16.65824 -16.44501 -16.11922 -15.56139 -15.34285 -15.32563 -15.04240 -14.85279 -14.43113 -14.24356 -13.81679 -13.60788 -13.54460 -13.46825 -13.13615 -12.95703 -12.90104 -12.79534 -12.34326 -12.15736 -11.90531 -11.82250 -11.49089 -11.26855 -11.11140 -10.84454 -10.75819 -9.79320 -9.46087 -9.28871 -7.99106 -5.34573 0.47040 1.07244 1.41161 1.41592 1.45069 1.52046 1.99398 2.42420 2.51637 2.78747 3.30575 3.38858 3.65447 3.77528 3.86822 3.94413 4.08577 4.11774 4.34469 4.35413 4.40457 4.47807 4.48943 4.69268 4.77426 4.84756 4.89174 4.97972 5.12126 5.15537 5.24703 5.31903 5.37412 5.54161 5.65216 5.79500 6.23989 6.50660 6.62147 6.65681 7.08786 7.19024 7.81999 8.03394 9.22324 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.005127 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.906929 B = 5460.156311 C = 7121.005286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.059 0.941 7 N -0.735 5.735 8 C -0.233 4.233 9 H 0.054 0.946 10 C -0.059 4.059 11 N -0.983 5.983 12 Si 0.955 3.045 13 H -0.280 1.280 14 H -0.296 1.296 15 H -0.246 1.246 16 C 0.103 3.897 17 N -0.599 5.599 18 C 0.612 3.388 19 O -0.571 6.571 20 C -0.085 4.085 21 C 0.065 3.935 22 N -0.453 5.453 23 C 0.061 3.939 24 C 0.370 3.630 25 O -0.446 6.446 26 N -0.488 5.488 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.370 0.630 33 H 0.258 0.742 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.224 0.776 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 7.051 -18.245 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.077 0.923 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.072 0.928 10 C -0.251 4.251 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.207 1.207 14 H -0.223 1.223 15 H -0.170 1.170 16 C -0.023 4.023 17 N -0.330 5.330 18 C 0.402 3.598 19 O -0.452 6.452 20 C -0.213 4.213 21 C -0.075 4.075 22 N -0.147 5.147 23 C -0.079 4.079 24 C 0.068 3.932 25 O -0.249 6.249 26 N -0.218 5.218 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.204 0.796 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.241 0.759 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -12.788 7.449 -17.861 23.196 hybrid contribution -0.498 -1.181 -0.166 1.292 sum -13.285 6.268 -18.027 23.255 Atomic orbital electron populations 1.22049 0.93477 1.02101 1.03196 1.21689 0.95497 0.96127 0.83542 0.90272 1.23001 0.97070 0.99745 0.96593 1.21456 0.96243 0.87533 0.89306 0.92315 1.42515 1.07454 1.30514 1.57262 1.18999 0.86786 1.06760 1.23788 0.92819 1.25477 0.98778 0.98965 1.01848 1.69894 1.21625 1.24907 1.46935 0.85419 0.79447 0.78965 0.78013 1.20660 1.22288 1.17029 1.23026 0.94880 0.86892 0.97513 1.48388 1.51106 1.28710 1.04835 1.16730 0.79248 0.82972 0.80877 1.90717 1.42240 1.28361 1.83873 1.20364 1.08010 0.99069 0.93856 1.22978 0.98075 0.95394 0.91030 1.46091 1.37125 1.21552 1.09920 1.22537 1.05599 1.06556 0.73225 1.20498 0.97638 0.91811 0.83208 1.84868 1.32416 1.16035 1.91574 1.71020 1.15709 1.12299 1.22796 0.92979 0.89246 0.92590 0.88228 0.89694 0.79627 0.93336 0.93004 0.90699 0.75912 0.87885 0.86780 0.88315 0.71722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.11 71.98 0.66 -3.14 16 2 C 0.13 3.93 3.46 45.34 0.16 4.09 16 3 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.13 -3.74 6.13 31.78 0.19 -3.54 16 5 C 0.16 6.49 3.71 46.38 0.17 6.67 16 6 H 0.06 2.48 8.09 -2.39 -0.02 2.47 16 7 N -0.74 -34.42 5.05 -316.37 -1.60 -36.02 16 8 C -0.23 -13.40 10.44 84.03 0.88 -12.52 16 9 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 10 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 11 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 12 Si 0.95 45.25 27.74 68.60 1.90 47.16 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 15 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 16 C 0.10 3.99 5.82 86.86 0.51 4.50 16 17 N -0.60 -20.66 3.07 -792.07 -2.43 -23.09 16 18 C 0.61 21.20 7.63 86.61 0.66 21.86 16 19 O -0.57 -20.51 15.89 -4.13 -0.07 -20.58 16 20 C -0.09 -2.67 6.80 40.40 0.27 -2.40 16 21 C 0.06 1.42 11.29 83.53 0.94 2.36 16 22 N -0.45 -8.38 3.16 -662.75 -2.09 -10.47 16 23 C 0.06 0.42 11.11 127.77 1.42 1.84 16 24 C 0.37 9.73 9.03 179.84 1.62 11.36 16 25 O -0.45 -9.89 13.55 -87.55 -1.19 -11.08 16 26 N -0.49 -16.60 8.39 -303.17 -2.54 -19.15 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.56 6.85 -2.39 -0.02 1.55 16 30 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.08 2.39 7.72 -2.39 -0.02 2.37 16 32 H 0.37 16.31 5.62 -92.70 -0.52 15.79 16 33 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 3.29 6.13 -2.39 -0.01 3.27 16 36 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.42 4.94 9.06 -74.06 -0.67 4.27 16 Total: -1.00 -81.41 334.61 0.07 -81.35 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.17 Total: 27.12 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 7.95 Total: 28.04 kcal Atomic # 7 Polarization: -143.64 SS G_CDS: -8.36 Total: -152.00 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.25 Total: -31.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.16 kcal Total: -81.41 0.07 -81.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989397287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.515 kcal (2) G-P(sol) polarization free energy of solvation -81.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds