Wall clock time and date at job start Tue Mar 31 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30270 * 126.28402 * 2 1 4 4 N 1.28671 * 109.38202 * 179.73032 * 3 2 1 5 5 C 1.30268 * 109.37775 * 0.44110 * 4 3 2 6 6 C 1.50697 * 126.28279 * 179.82822 * 5 4 3 7 7 C 1.50700 * 109.47266 * 89.68843 * 6 5 4 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.53626 * 108.53906 * 126.36585 * 10 9 7 12 12 C 1.53041 * 109.24183 * 54.85853 * 11 10 9 13 13 N 1.46493 * 109.46261 * 178.48654 * 12 11 10 14 14 C 1.36948 * 119.99998 * 275.06879 * 13 12 11 15 15 H 1.07996 * 119.99762 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31623 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99861 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47288 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47331 * 120.00219 * 18 16 14 21 21 H 1.48504 * 109.47015 * 239.99948 * 18 16 14 22 22 C 1.53036 * 109.53807 * 298.50777 * 12 11 10 23 23 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 24 24 O 1.34358 * 107.43765 * 359.56664 * 5 4 3 25 25 H 1.08997 * 109.47419 * 270.00460 * 1 2 3 26 26 H 1.09004 * 109.46742 * 30.00323 * 1 2 3 27 27 H 1.09002 * 109.47481 * 150.00122 * 1 2 3 28 28 H 1.09004 * 109.47205 * 329.68937 * 6 5 4 29 29 H 1.08997 * 109.47395 * 209.69429 * 6 5 4 30 30 H 1.08998 * 109.58645 * 246.19910 * 10 9 7 31 31 H 1.09001 * 109.58579 * 6.63067 * 10 9 7 32 32 H 1.08990 * 109.63926 * 294.86483 * 11 10 9 33 33 H 1.09009 * 109.45677 * 174.73785 * 11 10 9 34 34 H 1.09009 * 109.44893 * 58.52020 * 12 11 10 35 35 H 0.97000 * 120.00421 * 95.06454 * 13 12 11 36 36 H 0.96996 * 120.00161 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.49825 * 301.41219 * 22 12 11 38 38 H 1.09001 * 109.52568 * 181.32976 * 22 12 11 39 39 H 1.09007 * 109.58781 * 353.37617 * 23 9 7 40 40 H 1.08998 * 109.58580 * 113.65434 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5653 -0.6254 0.0001 6 6 4.8175 -1.4639 0.0002 7 6 5.2349 -1.7433 1.4210 8 8 4.5798 -1.3052 2.3428 9 7 6.3363 -2.4801 1.6673 10 6 7.1367 -3.0229 0.5611 11 6 8.5974 -2.5888 0.7563 12 6 9.0709 -3.0218 2.1457 13 7 10.4746 -2.6422 2.3233 14 6 11.4696 -3.4668 1.8698 15 1 11.2193 -4.3966 1.3808 16 6 12.7997 -3.1068 2.0376 17 7 13.1046 -1.9733 2.6330 18 14 14.1568 -4.2311 1.4183 19 1 13.5546 -5.4350 0.7913 20 1 14.9789 -3.5085 0.4147 21 1 15.0158 -4.6439 2.5571 22 6 8.2178 -2.3346 3.2143 23 6 6.7563 -2.7605 3.0470 24 8 2.3021 -1.0831 0.0001 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 5.6146 -0.9265 -0.5137 29 1 4.6244 -2.4055 -0.5137 30 1 7.0725 -4.1109 0.5632 31 1 6.7621 -2.6343 -0.3859 32 1 8.6725 -1.5051 0.6678 33 1 9.2209 -3.0600 -0.0037 34 1 8.9721 -4.1032 2.2422 35 1 10.6994 -1.8069 2.7621 36 1 14.0340 -1.7219 2.7506 37 1 8.2964 -1.2532 3.1027 38 1 8.5704 -2.6248 4.2041 39 1 6.1304 -2.1990 3.7408 40 1 6.6591 -3.8273 3.2489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996276967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:07 Heat of formation + Delta-G solvation = -14.760276 kcal Electronic energy + Delta-G solvation = -23290.464370 eV Core-core repulsion = 19720.390623 eV Total energy + Delta-G solvation = -3570.073747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.30714 -41.31189 -38.81785 -37.26802 -36.17752 -34.76533 -33.85705 -32.54298 -31.47355 -30.85642 -28.36174 -26.54720 -24.67971 -24.36555 -23.74381 -23.39279 -21.72078 -20.24554 -19.10814 -18.84852 -18.22658 -17.95065 -17.03887 -16.72061 -16.70105 -15.74073 -15.62820 -15.46663 -15.32280 -14.95344 -14.81709 -14.39126 -14.01194 -13.90713 -13.55433 -13.50430 -13.34959 -13.29893 -13.10721 -12.96051 -12.86433 -12.62721 -12.17293 -12.08865 -12.03032 -12.00209 -11.69182 -11.29041 -11.22935 -10.87552 -10.52336 -9.75503 -8.98813 -7.91617 -5.20286 0.05068 1.12965 1.28191 1.41367 1.49806 1.50155 1.59941 1.95986 2.58348 2.76931 3.31724 3.39147 3.42643 3.77467 3.82385 3.93508 4.04236 4.10825 4.19169 4.34013 4.34648 4.37947 4.43167 4.53313 4.56060 4.65536 4.72410 4.80671 4.84164 4.87749 5.03264 5.04566 5.10180 5.30914 5.51087 5.56010 5.64664 6.27796 6.30677 6.95528 7.20009 7.35985 8.12633 8.34445 9.32414 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.041025 B = 0.002714 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.339979 B =10312.698219 C =10429.108098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.171 3.829 3 N -0.333 5.333 4 N -0.315 5.315 5 C 0.182 3.818 6 C -0.042 4.042 7 C 0.519 3.481 8 O -0.587 6.587 9 N -0.598 5.598 10 C 0.109 3.891 11 C -0.145 4.145 12 C 0.171 3.829 13 N -0.741 5.741 14 C -0.230 4.230 15 H 0.083 0.917 16 C -0.082 4.082 17 N -0.974 5.974 18 Si 0.970 3.030 19 H -0.260 1.260 20 H -0.297 1.297 21 H -0.299 1.299 22 C -0.129 4.129 23 C 0.124 3.876 24 O -0.226 6.226 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.175 0.825 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.232 -3.997 -8.893 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 N -0.179 5.179 4 N -0.160 5.160 5 C -0.030 4.030 6 C -0.082 4.082 7 C 0.307 3.693 8 O -0.468 6.468 9 N -0.330 5.330 10 C -0.013 4.013 11 C -0.185 4.185 12 C 0.063 3.937 13 N -0.379 5.379 14 C -0.361 4.361 15 H 0.101 0.899 16 C -0.274 4.274 17 N -0.625 5.625 18 Si 0.800 3.200 19 H -0.184 1.184 20 H -0.225 1.225 21 H -0.227 1.227 22 C -0.168 4.168 23 C 0.001 3.999 24 O -0.106 6.106 25 H 0.132 0.868 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.182 0.818 29 H 0.193 0.807 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.200 0.800 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -25.115 -2.705 -8.493 26.650 hybrid contribution 1.243 -0.814 0.357 1.528 sum -23.872 -3.520 -8.136 25.465 Atomic orbital electron populations 1.20745 0.76242 1.07657 1.06804 1.29118 0.99537 0.78697 0.96605 1.74301 0.96262 1.27306 1.20059 1.74282 1.13218 1.10580 1.17963 1.27434 0.85708 0.91067 0.98811 1.20425 0.89269 1.02576 0.95957 1.20500 0.80512 0.77420 0.90914 1.90729 1.55229 1.53079 1.47759 1.48163 1.25301 1.51024 1.08517 1.22207 0.89300 1.00514 0.89237 1.22560 0.95703 1.00798 0.99484 1.20458 0.82880 0.97244 0.93081 1.42717 1.01039 1.23795 1.70397 1.19689 0.86690 1.00818 1.28941 0.89911 1.25573 0.99773 0.99108 1.02920 1.69838 1.17187 1.24958 1.50551 0.85106 0.79426 0.78514 0.76934 1.18440 1.22503 1.22673 1.22062 0.94755 1.00050 0.99963 1.21521 0.93800 1.01894 0.82672 1.84759 1.17349 1.38636 1.69811 0.86796 0.86018 0.86227 0.81820 0.80739 0.88342 0.86229 0.93562 0.91027 0.92810 0.80032 0.94299 0.93538 0.91142 0.90387 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 2 C 0.17 3.57 8.48 88.34 0.75 4.32 16 3 N -0.33 -9.54 12.22 -165.51 -2.02 -11.56 16 4 N -0.31 -9.69 12.22 -165.52 -2.02 -11.72 16 5 C 0.18 4.47 6.97 88.34 0.62 5.08 16 6 C -0.04 -0.69 4.67 29.10 0.14 -0.55 16 7 C 0.52 12.79 7.69 87.66 0.67 13.46 16 8 O -0.59 -20.24 15.45 -3.03 -0.05 -20.29 16 9 N -0.60 -13.42 2.97 -818.13 -2.43 -15.85 16 10 C 0.11 1.90 6.37 86.51 0.55 2.45 16 11 C -0.14 -4.08 5.67 30.82 0.17 -3.90 16 12 C 0.17 5.98 2.73 45.02 0.12 6.10 16 13 N -0.74 -35.43 5.12 -322.82 -1.65 -37.09 16 14 C -0.23 -12.04 9.93 84.03 0.83 -11.20 16 15 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 17 N -0.97 -59.26 13.06 21.65 0.28 -58.97 16 18 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 22 C -0.13 -4.05 5.55 30.66 0.17 -3.88 16 23 C 0.12 3.15 6.43 86.35 0.55 3.71 16 24 O -0.23 -5.08 10.87 -3.59 -0.04 -5.11 16 25 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.16 2.01 7.70 -2.38 -0.02 2.00 16 29 H 0.18 1.17 7.93 -2.39 -0.02 1.15 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.12 1.16 5.93 -2.39 -0.01 1.15 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 35 H 0.37 19.66 7.80 -92.71 -0.72 18.93 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.20 7.01 -2.38 -0.02 2.19 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -81.63 337.16 0.24 -81.39 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.34 Total: 20.51 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.80 Total: 11.77 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -7.84 Total: -135.19 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.09 Total: -25.40 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -81.63 0.24 -81.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996276967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.631 kcal (2) G-P(sol) polarization free energy of solvation -81.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds