Wall clock time and date at job start Tue Mar 31 2020 04:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.54210 * 2 1 4 4 O 1.35209 * 125.49738 * 0.02562 * 3 2 1 5 5 N 1.31544 * 109.01278 * 180.26192 * 3 2 1 6 6 C 1.33220 * 109.75816 * 359.75828 * 5 3 2 7 7 C 1.36713 * 107.96689 * 0.02562 * 6 5 3 8 8 C 1.46384 * 126.82804 * 179.97438 * 7 6 5 9 9 O 1.21738 * 119.99842 * 152.27909 * 8 7 6 10 10 N 1.34772 * 119.99617 * 332.27970 * 8 7 6 11 11 C 1.46928 * 120.63477 * 351.34713 * 10 8 7 12 12 C 1.53190 * 108.77364 * 233.62876 * 11 10 8 13 13 C 1.53034 * 109.31808 * 305.36258 * 12 11 10 14 14 C 1.53045 * 109.53546 * 61.36390 * 13 12 11 15 15 H 1.09007 * 109.49664 * 58.59134 * 14 13 12 16 16 N 1.46504 * 109.52353 * 178.66676 * 14 13 12 17 17 C 1.36939 * 119.99958 * 204.91956 * 16 14 13 18 18 H 1.07996 * 120.00272 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99887 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99742 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47155 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47287 * 119.99605 * 21 19 17 24 24 H 1.48491 * 109.46999 * 239.99774 * 21 19 17 25 25 C 1.46928 * 120.62583 * 171.36997 * 10 8 7 26 26 H 1.08994 * 109.47426 * 264.66635 * 1 2 3 27 27 H 1.09000 * 109.47268 * 24.66942 * 1 2 3 28 28 H 1.09005 * 109.47201 * 144.66435 * 1 2 3 29 29 H 0.96696 * 113.99852 * 270.30707 * 4 3 2 30 30 H 1.07998 * 126.01300 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.58337 * 353.41712 * 11 10 8 32 32 H 1.08996 * 109.58438 * 113.84193 * 11 10 8 33 33 H 1.09002 * 109.49659 * 65.31662 * 12 11 10 34 34 H 1.09003 * 109.49374 * 185.37765 * 12 11 10 35 35 H 1.08998 * 109.46115 * 301.34903 * 13 12 11 36 36 H 1.08991 * 109.46487 * 181.38399 * 13 12 11 37 37 H 0.96994 * 120.00079 * 24.92430 * 16 14 13 38 38 H 0.97002 * 119.99723 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.59000 * 6.58281 * 25 10 8 40 40 H 1.09004 * 109.70513 * 246.22332 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8516 2.3704 0.0005 5 7 3.5228 0.6880 -0.0057 6 6 3.5747 -0.6432 -0.0042 7 6 2.2916 -1.1152 0.0022 8 6 1.8726 -2.5178 0.0053 9 8 0.8065 -2.8335 0.5010 10 7 2.6673 -3.4596 -0.5405 11 6 3.8616 -3.0791 -1.3070 12 6 3.8005 -3.7525 -2.6816 13 6 3.6258 -5.2618 -2.4986 14 6 2.3112 -5.5397 -1.7657 15 1 1.4812 -5.1245 -2.3374 16 7 2.1288 -6.9859 -1.6188 17 6 0.8700 -7.5065 -1.4794 18 1 0.0116 -6.8511 -1.4782 19 6 0.6972 -8.8767 -1.3397 20 7 1.7432 -9.6755 -1.3416 21 14 -1.0201 -9.5871 -1.1503 22 1 -2.0170 -8.4868 -1.1803 23 1 -1.2908 -10.5314 -2.2640 24 1 -1.1176 -10.3076 0.1444 25 6 2.3553 -4.8865 -0.3807 26 1 -0.3634 -0.0955 1.0231 27 1 -0.3634 0.9339 -0.4289 28 1 -0.3634 -0.8384 -0.5944 29 1 1.7255 2.7432 -0.8827 30 1 4.4723 -1.2438 -0.0075 31 1 3.8863 -1.9965 -1.4312 32 1 4.7557 -3.4088 -0.7780 33 1 2.9564 -3.3542 -3.2447 34 1 4.7251 -3.5560 -3.2244 35 1 4.4574 -5.6554 -1.9142 36 1 3.6066 -5.7462 -3.4747 37 1 2.8997 -7.5745 -1.6201 38 1 1.6225 -10.6329 -1.2436 39 1 1.3864 -4.9965 0.1062 40 1 3.1250 -5.3654 0.2247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999892284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:32 Heat of formation + Delta-G solvation = 16.695312 kcal Electronic energy + Delta-G solvation = -24036.995334 eV Core-core repulsion = 20468.285604 eV Total energy + Delta-G solvation = -3568.709730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52124 -39.75139 -37.70501 -37.25836 -34.75456 -34.19036 -32.41124 -31.28540 -29.87816 -28.02859 -27.30698 -25.52536 -24.02725 -22.68160 -22.10545 -21.70336 -20.21920 -19.15100 -18.78133 -17.13088 -17.04242 -16.98420 -16.18459 -15.70011 -15.14203 -14.55471 -14.49115 -14.46533 -13.93128 -13.85107 -13.51924 -13.39808 -13.02092 -12.99640 -12.77713 -12.45951 -12.41274 -12.26620 -11.34651 -11.07022 -10.87816 -10.69449 -10.62392 -10.49746 -10.20310 -10.02204 -9.88636 -9.85663 -9.67304 -9.12116 -8.69426 -8.38494 -7.03413 -5.81673 -3.11585 1.07270 1.90387 2.44025 3.06701 3.23045 3.42288 3.48824 3.50431 3.50954 4.34873 4.47752 4.55686 4.74962 4.90321 4.95471 5.05242 5.10923 5.24217 5.28310 5.44623 5.52050 5.57913 5.70021 5.78721 5.87479 5.99314 6.10637 6.13478 6.16502 6.21363 6.31826 6.44346 6.67033 6.78621 6.95533 7.19276 7.49667 7.53899 7.69486 8.20208 8.36561 9.48516 10.02144 10.37401 11.40568 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.003743 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.850928 B = 7479.510207 C = 8305.414455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.429 5.429 3 C 0.388 3.612 4 O -0.440 6.440 5 N -0.487 5.487 6 C 0.042 3.958 7 C -0.063 4.063 8 C 0.586 3.414 9 O -0.540 6.540 10 N -0.590 5.590 11 C 0.090 3.910 12 C -0.129 4.129 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.094 3.906 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.402 0.598 30 H 0.191 0.809 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.092 0.908 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 21.344 -1.655 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.122 5.122 3 C 0.089 3.911 4 O -0.240 6.240 5 N -0.215 5.215 6 C -0.112 4.112 7 C -0.180 4.180 8 C 0.373 3.627 9 O -0.419 6.419 10 N -0.322 5.322 11 C -0.033 4.033 12 C -0.167 4.167 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.069 0.931 16 N -0.358 5.358 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.030 4.030 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.259 0.741 30 H 0.208 0.792 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.551 21.696 -0.792 21.999 hybrid contribution -1.454 -0.985 -0.273 1.777 sum 2.098 20.711 -1.065 20.844 Atomic orbital electron populations 1.22154 0.75153 1.04502 1.05047 1.45676 1.08443 1.05656 1.52440 1.20201 0.84517 0.81307 1.05098 1.84843 1.87022 1.18011 1.34143 1.70307 1.16411 1.12791 1.22028 1.22754 0.95728 0.89975 1.02699 1.20817 0.91180 0.88482 1.17538 1.16710 0.84055 0.82834 0.79084 1.90852 1.22004 1.82064 1.46944 1.47963 1.25894 1.07125 1.51249 1.22267 0.87649 1.00867 0.92538 1.21873 1.02210 0.96606 0.96049 1.21838 0.98824 0.94404 1.01474 1.20485 0.95177 0.86369 0.92202 0.93131 1.42388 1.06661 0.99755 1.87017 1.19314 0.85123 0.90750 1.42242 0.90986 1.24747 0.97251 0.96094 1.02534 1.69669 1.27985 1.03268 1.56989 0.86125 0.83894 0.78940 0.77307 1.20457 1.21825 1.21765 1.22891 1.02671 0.75903 1.01517 0.89539 0.89405 0.88625 0.74052 0.79197 0.88890 0.90839 0.91723 0.90754 0.91872 0.91359 0.78012 0.93477 0.88969 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.42 59.85 0.62 1.31 16 2 N -0.43 -5.06 3.20 -122.12 -0.39 -5.45 16 3 C 0.39 4.42 9.01 -89.59 -0.81 3.62 16 4 O -0.44 -3.68 13.45 -17.32 -0.23 -3.92 16 5 N -0.49 -6.18 11.22 -14.62 -0.16 -6.34 16 6 C 0.04 0.49 9.46 -17.50 -0.17 0.33 16 7 C -0.06 -0.84 6.35 -81.98 -0.52 -1.36 16 8 C 0.59 9.29 7.47 -12.99 -0.10 9.19 16 9 O -0.54 -10.42 15.37 5.15 0.08 -10.34 16 10 N -0.59 -8.71 2.97 -174.42 -0.52 -9.23 16 11 C 0.09 0.98 5.12 -3.71 -0.02 0.96 16 12 C -0.13 -1.46 6.08 -26.62 -0.16 -1.63 16 13 C -0.13 -1.90 5.36 -26.69 -0.14 -2.04 16 14 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 15 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 16 N -0.72 -17.39 5.13 -53.30 -0.27 -17.66 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 C 0.09 1.71 6.03 -3.71 -0.02 1.68 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 28 H 0.10 0.99 7.63 -51.93 -0.40 0.60 16 29 H 0.40 1.15 9.06 45.56 0.41 1.56 16 30 H 0.19 1.74 6.38 -52.49 -0.33 1.40 16 31 H 0.09 0.88 4.35 -51.93 -0.23 0.66 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.39 9.83 7.80 -40.82 -0.32 9.51 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.09 1.96 7.00 -51.93 -0.36 1.60 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -34.65 330.37 -7.15 -41.79 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.57 Total: 7.82 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -1.76 Total: 7.89 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.62 Total: -65.59 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.15 Total: -14.25 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.65 -7.15 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999892284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.489 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds