Wall clock time and date at job start Tue Mar 31 2020 04:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36344 * 126.19883 * 2 1 4 4 C 1.36244 * 106.88537 * 180.13425 * 3 2 1 5 5 C 1.47250 * 126.16476 * 179.90648 * 4 3 2 6 6 O 1.21638 * 119.99991 * 359.71036 * 5 4 3 7 7 N 1.34778 * 119.99885 * 179.71473 * 5 4 3 8 8 C 1.46510 * 119.99467 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.50091 * 35.00153 * 8 7 5 10 10 C 1.53041 * 109.49071 * 155.06613 * 8 7 5 11 11 C 1.53045 * 109.53376 * 181.34598 * 10 8 7 12 12 C 1.53187 * 109.31386 * 298.63238 * 11 10 8 13 13 N 1.46927 * 108.77552 * 54.63859 * 12 11 10 14 14 C 1.36935 * 120.63389 * 126.41302 * 13 12 11 15 15 H 1.08005 * 119.99603 * 207.67754 * 14 13 12 16 16 C 1.38806 * 120.00126 * 27.67336 * 14 13 12 17 17 N 1.31614 * 120.00086 * 17.35643 * 16 14 13 18 18 Si 1.86802 * 120.00189 * 197.35767 * 16 14 13 19 19 H 1.48501 * 109.47024 * 59.99917 * 18 16 14 20 20 H 1.48502 * 109.47281 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47155 * 300.00048 * 18 16 14 22 22 C 1.46935 * 118.73713 * 306.39090 * 13 12 11 23 23 N 1.36034 * 107.67086 * 359.64114 * 4 3 2 24 24 C 1.30705 * 108.94432 * 0.22670 * 23 4 3 25 25 O 1.35451 * 125.54840 * 179.97438 * 24 23 4 26 26 H 1.08996 * 109.47090 * 270.24135 * 1 2 3 27 27 H 1.09003 * 109.47039 * 30.24296 * 1 2 3 28 28 H 1.09007 * 109.47316 * 150.23511 * 1 2 3 29 29 H 1.07995 * 126.55498 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00294 * 359.97438 * 7 5 4 31 31 H 1.08997 * 109.46005 * 301.36040 * 10 8 7 32 32 H 1.08998 * 109.46549 * 61.32960 * 10 8 7 33 33 H 1.09007 * 109.49603 * 58.59023 * 11 10 8 34 34 H 1.09006 * 109.49497 * 178.64753 * 11 10 8 35 35 H 1.09004 * 109.58977 * 174.41771 * 12 11 10 36 36 H 1.08998 * 109.59220 * 294.70661 * 12 11 10 37 37 H 0.97002 * 120.00256 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.58085 * 293.82404 * 22 13 12 39 39 H 1.08991 * 109.58558 * 173.39953 * 22 13 12 40 40 H 0.96696 * 114.00031 * 90.03070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1003 0.0000 4 6 3.5560 0.6497 -0.0031 5 6 4.7692 1.4841 -0.0061 6 8 4.6733 2.6967 -0.0114 7 7 5.9859 0.9044 -0.0032 8 6 7.1930 1.7348 -0.0068 9 1 7.0156 2.6371 0.5783 10 6 8.3550 0.9492 0.6053 11 6 9.6081 1.8274 0.6327 12 6 9.9875 2.2138 -0.8003 13 7 8.8253 2.8409 -1.4444 14 6 8.9334 4.0733 -2.0313 15 1 8.0690 4.7173 -2.0981 16 6 10.1540 4.4948 -2.5405 17 7 11.1072 3.6182 -2.7751 18 14 10.4436 6.3063 -2.8927 19 1 10.2901 7.0853 -1.6378 20 1 11.8168 6.4935 -3.4261 21 1 9.4543 6.7803 -3.8937 22 6 7.5448 2.1201 -1.4471 23 7 3.5170 -0.7101 0.0033 24 6 2.2691 -1.0989 0.0051 25 8 1.8450 -2.3852 0.0105 26 1 -0.3633 0.0043 1.0276 27 1 -0.3633 0.8878 -0.5176 28 1 -0.3634 -0.8921 -0.5102 29 1 1.9501 2.1317 0.0004 30 1 6.0624 -0.0626 0.0013 31 1 8.0972 0.6526 1.6219 32 1 8.5480 0.0598 0.0055 33 1 9.4080 2.7289 1.2119 34 1 10.4291 1.2756 1.0907 35 1 10.8188 2.9186 -0.7808 36 1 10.2779 1.3215 -1.3547 37 1 11.9601 3.9128 -3.1313 38 1 7.6337 1.2197 -2.0550 39 1 6.7646 2.7630 -1.8544 40 1 1.7216 -2.7549 0.8955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008417828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:52 Heat of formation + Delta-G solvation = -17.170766 kcal Electronic energy + Delta-G solvation = -23535.513967 eV Core-core repulsion = 19965.335693 eV Total energy + Delta-G solvation = -3570.178274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.21347 -40.70706 -38.91608 -38.20562 -35.91444 -35.18806 -34.03529 -32.33518 -30.74798 -29.90200 -28.00377 -27.24489 -24.85191 -23.86209 -23.08741 -22.38145 -21.29764 -20.87494 -19.49155 -18.70973 -18.51979 -17.40902 -17.12787 -16.63312 -16.54711 -16.06104 -15.74240 -15.43826 -15.30107 -15.13986 -14.92515 -14.72826 -14.18604 -14.00931 -13.56005 -13.50243 -13.39220 -13.01428 -12.91603 -12.70726 -12.56196 -12.13934 -11.96102 -11.77408 -11.59145 -11.44745 -11.29969 -11.00487 -10.82543 -10.59754 -10.12680 -9.57883 -8.68867 -7.88962 -5.34799 0.46934 1.07687 1.40065 1.45938 1.48788 1.56246 2.14205 2.43859 2.52474 2.81241 3.24913 3.61831 3.71425 3.81947 3.90809 4.11396 4.12568 4.26962 4.38958 4.42560 4.48800 4.58900 4.71363 4.80824 4.86229 4.93046 5.03130 5.13431 5.14678 5.25265 5.27905 5.48511 5.57272 5.63782 5.65205 5.77055 6.37359 6.43904 6.63649 6.76349 7.13475 7.26908 7.82804 8.34001 9.16956 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.003305 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.134957 B = 8470.797960 C = 9104.164408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.455 5.455 3 C 0.059 3.941 4 C -0.077 4.077 5 C 0.597 3.403 6 O -0.579 6.579 7 N -0.699 5.699 8 C 0.142 3.858 9 H 0.064 0.936 10 C -0.105 4.105 11 C -0.128 4.128 12 C 0.171 3.829 13 N -0.606 5.606 14 C -0.270 4.270 15 H 0.056 0.944 16 C -0.045 4.045 17 N -0.931 5.931 18 Si 0.969 3.031 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.146 3.854 23 N -0.487 5.487 24 C 0.381 3.619 25 O -0.440 6.440 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.215 0.785 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.003 0.997 37 H 0.253 0.747 38 H 0.015 0.985 39 H 0.032 0.968 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 -12.323 10.845 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.149 5.149 3 C -0.081 4.081 4 C -0.205 4.205 5 C 0.384 3.616 6 O -0.459 6.459 7 N -0.348 5.348 8 C 0.036 3.964 9 H 0.083 0.917 10 C -0.143 4.143 11 C -0.167 4.167 12 C 0.046 3.954 13 N -0.330 5.330 14 C -0.400 4.400 15 H 0.073 0.927 16 C -0.241 4.241 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.204 1.204 22 C 0.019 3.981 23 N -0.218 5.218 24 C 0.079 3.921 25 O -0.244 6.244 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.231 0.769 30 H 0.250 0.750 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.021 0.979 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -21.746 -12.068 10.175 26.871 hybrid contribution -0.234 0.821 -0.173 0.871 sum -21.981 -11.247 10.002 26.640 Atomic orbital electron populations 1.22543 0.72613 1.06857 1.05960 1.46028 1.10031 1.05211 1.53589 1.22950 0.89021 0.93730 1.02401 1.20182 0.93575 0.89797 1.16962 1.17244 0.82812 0.86229 0.75299 1.90802 1.87277 1.14888 1.52958 1.45768 1.04621 1.10968 1.73475 1.21314 0.83962 0.93923 0.97210 0.91728 1.21612 0.93301 0.98061 1.01322 1.22011 0.97591 0.99209 0.97900 1.20729 0.89782 0.95146 0.89769 1.44237 1.06203 1.18319 1.64273 1.19414 0.96298 0.92289 1.32047 0.92653 1.25763 0.97669 1.01940 0.98709 1.70174 1.05781 1.33734 1.47957 0.85327 0.76719 0.80242 0.78073 1.20356 1.21280 1.20375 1.21200 0.87998 0.94383 0.94568 1.70727 1.18933 1.10886 1.21268 1.20309 0.83889 0.82610 1.05302 1.84868 1.86350 1.16828 1.36325 0.87786 0.87410 0.87758 0.76886 0.74999 0.89590 0.91091 0.93041 0.89621 0.92431 0.97920 0.93834 0.96729 0.94905 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 11.11 127.77 1.42 1.66 16 2 N -0.46 -6.77 3.16 -662.76 -2.09 -8.86 16 3 C 0.06 1.21 11.29 83.53 0.94 2.15 16 4 C -0.08 -2.20 6.97 40.40 0.28 -1.91 16 5 C 0.60 21.17 7.78 86.61 0.67 21.84 16 6 O -0.58 -24.50 16.54 -4.15 -0.07 -24.57 16 7 N -0.70 -23.67 5.08 -445.57 -2.26 -25.93 16 8 C 0.14 5.56 2.60 45.07 0.12 5.68 16 9 H 0.06 2.85 7.58 -2.39 -0.02 2.83 16 10 C -0.10 -3.48 5.35 30.62 0.16 -3.32 16 11 C -0.13 -4.85 6.08 30.67 0.19 -4.67 16 12 C 0.17 8.56 5.31 86.36 0.46 9.02 16 13 N -0.61 -33.18 3.00 -699.10 -2.09 -35.28 16 14 C -0.27 -16.20 9.58 84.03 0.81 -15.39 16 15 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 16 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 17 N -0.93 -56.78 11.19 21.65 0.24 -56.54 16 18 Si 0.97 47.11 29.59 68.60 2.03 49.14 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C 0.15 6.99 6.09 86.36 0.53 7.52 16 23 N -0.49 -12.90 11.03 -303.17 -3.34 -16.25 16 24 C 0.38 7.35 9.03 179.84 1.62 8.97 16 25 O -0.44 -5.64 13.55 -87.48 -1.19 -6.82 16 26 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 29 H 0.21 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.41 12.26 8.31 -92.71 -0.77 11.49 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 38 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.03 1.70 7.93 -2.39 -0.02 1.68 16 40 H 0.43 0.74 9.06 -74.06 -0.67 0.07 16 Total: -1.00 -81.67 337.00 -1.52 -83.20 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -0.36 Total: 12.60 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 7.62 Total: 29.32 kcal Atomic # 7 Polarization: -133.31 SS G_CDS: -9.55 Total: -142.86 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.25 Total: -31.40 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -81.67 -1.52 -83.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008417828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.026 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds