Wall clock time and date at job start Tue Mar 31 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35858 * 116.99648 * 2 1 4 4 N 1.30811 * 126.05858 * 359.69718 * 3 2 1 5 5 N 1.39917 * 108.87547 * 179.84626 * 4 3 2 6 6 C 1.46503 * 125.68653 * 180.13824 * 5 4 3 7 7 C 1.34165 * 108.62641 * 0.41977 * 5 4 3 8 8 C 1.38125 * 107.50520 * 359.75462 * 7 5 4 9 9 C 1.47249 * 126.44518 * 180.02562 * 8 7 5 10 10 O 1.21629 * 119.99998 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00179 * 359.95815 * 9 8 7 12 12 C 1.46504 * 120.00201 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88318 * 328.87634 * 12 11 9 14 14 C 1.55157 * 111.00252 * 205.00214 * 12 11 9 15 15 C 1.54322 * 102.94005 * 277.42420 * 14 12 11 16 16 N 1.47027 * 107.27218 * 337.81183 * 15 14 12 17 17 C 1.36936 * 125.64723 * 178.89905 * 16 15 14 18 18 H 1.08001 * 119.99468 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00408 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00312 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46688 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46705 * 120.00023 * 21 19 17 24 24 H 1.48492 * 109.47248 * 240.00164 * 21 19 17 25 25 C 1.47419 * 108.70149 * 358.93492 * 16 15 14 26 26 H 1.09002 * 109.47382 * 59.99643 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99630 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47219 * 270.33301 * 6 5 4 30 30 H 1.09001 * 109.46998 * 30.33393 * 6 5 4 31 31 H 1.09005 * 109.47188 * 150.32416 * 6 5 4 32 32 H 1.08001 * 126.24292 * 179.77636 * 7 5 4 33 33 H 0.96994 * 119.99798 * 359.97438 * 11 9 8 34 34 H 1.08997 * 110.72085 * 35.78742 * 14 12 11 35 35 H 1.08994 * 110.71944 * 158.88650 * 14 12 11 36 36 H 1.09001 * 109.88744 * 97.22548 * 15 14 12 37 37 H 1.09000 * 109.88745 * 218.39186 * 15 14 12 38 38 H 0.96995 * 120.00050 * 179.97438 * 20 19 17 39 39 H 1.08998 * 110.37622 * 265.29621 * 25 16 15 40 40 H 1.09002 * 110.36411 * 142.96935 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3766 -0.0056 5 7 2.4281 3.3801 0.0001 6 6 2.1703 4.8223 -0.0005 7 6 3.6385 2.8014 0.0001 8 6 3.4451 1.4337 0.0000 9 6 4.4956 0.4018 0.0005 10 8 4.1912 -0.7758 0.0008 11 7 5.7943 0.7621 0.0002 12 6 6.8393 -0.2646 0.0001 13 1 6.5057 -1.1587 0.5267 14 6 8.1561 0.2822 0.6120 15 6 8.8057 1.0257 -0.5740 16 7 8.2339 0.4647 -1.8069 17 6 8.5329 0.8681 -3.0809 18 1 8.0563 0.3906 -3.9243 19 6 9.4484 1.8906 -3.2883 20 7 10.0295 2.4722 -2.2605 21 14 9.8557 2.4414 -5.0262 22 1 9.0731 1.6351 -5.9972 23 1 9.5108 3.8771 -5.1840 24 1 11.3064 2.2502 -5.2789 25 6 7.2848 -0.6034 -1.4443 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.1060 5.1794 -1.0283 30 1 1.2304 5.0236 0.5136 31 1 2.9826 5.3368 0.5129 32 1 4.5903 3.3118 0.0005 33 1 6.0370 1.7012 -0.0007 34 1 7.9445 0.9711 1.4297 35 1 8.7915 -0.5352 0.9529 36 1 8.5808 2.0905 -0.5122 37 1 9.8847 0.8714 -0.5622 38 1 10.6696 3.1865 -2.4054 39 1 7.7783 -1.5749 -1.4710 40 1 6.4276 -0.5939 -2.1177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015495823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:44 Heat of formation + Delta-G solvation = 14.911364 kcal Electronic energy + Delta-G solvation = -23872.561509 eV Core-core repulsion = 20303.774421 eV Total energy + Delta-G solvation = -3568.787088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52758 -40.49571 -39.32640 -38.63035 -35.31834 -33.91433 -33.54424 -31.62247 -30.74192 -28.89544 -28.81109 -27.14870 -26.32787 -23.99287 -22.18255 -21.92970 -21.56329 -21.02251 -19.22948 -18.67329 -17.98276 -17.34558 -17.24329 -16.66743 -16.49258 -16.05076 -15.94196 -15.74325 -15.45934 -15.27382 -14.75537 -14.03565 -13.97239 -13.79651 -13.50717 -13.47848 -13.45733 -12.86615 -12.84616 -12.79094 -12.21708 -12.15424 -12.05870 -11.96783 -11.93714 -11.76421 -11.53256 -10.87684 -10.67969 -10.24802 -9.99918 -9.49876 -8.80556 -7.81096 -5.14538 0.47003 1.11889 1.25793 1.47590 1.49336 1.58849 2.17041 2.44454 2.51701 2.52786 3.37421 3.39436 3.73674 3.77258 3.89241 4.15329 4.24323 4.29160 4.33364 4.35301 4.39851 4.48389 4.55510 4.62183 4.73066 4.75435 4.76473 4.82098 4.96928 5.08236 5.11698 5.49139 5.66949 5.75332 5.82609 5.83985 6.15204 6.24754 6.49044 6.76441 7.16968 7.41610 7.81575 8.46433 9.28865 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.004230 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.951301 B = 6618.320925 C = 7303.631008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.295 3.705 4 N -0.366 5.366 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.151 3.849 8 C -0.329 4.329 9 C 0.593 3.407 10 O -0.585 6.585 11 N -0.697 5.697 12 C 0.143 3.857 13 H 0.098 0.902 14 C -0.132 4.132 15 C 0.185 3.815 16 N -0.620 5.620 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.943 5.943 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.293 1.293 25 C 0.122 3.878 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.228 0.772 33 H 0.407 0.593 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.009 0.991 38 H 0.247 0.753 39 H 0.029 0.971 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 5.988 8.957 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.090 3.910 4 N -0.207 5.207 5 N -0.121 5.121 6 C -0.051 4.051 7 C -0.004 4.004 8 C -0.344 4.344 9 C 0.382 3.618 10 O -0.466 6.466 11 N -0.347 5.347 12 C 0.037 3.963 13 H 0.116 0.884 14 C -0.171 4.171 15 C 0.060 3.940 16 N -0.347 5.347 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.593 5.593 21 Si 0.800 3.200 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.220 1.220 25 C -0.005 4.005 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.244 0.756 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.901 5.701 8.854 19.913 hybrid contribution 1.075 0.226 -1.236 1.654 sum -15.826 5.927 7.618 18.537 Atomic orbital electron populations 1.23241 0.75952 1.05251 1.02308 1.86464 1.23834 1.21322 1.88414 1.20655 0.90549 0.85579 0.94210 1.77215 1.14229 0.94602 1.34652 1.48158 1.02553 1.07736 1.53629 1.22513 1.06409 0.70624 1.05551 1.23575 0.92652 0.90973 0.93173 1.19752 0.91269 0.93876 1.29496 1.17381 0.82081 0.87387 0.74978 1.90734 1.82962 1.19932 1.53021 1.45515 1.04238 1.10429 1.74522 1.21906 0.87266 0.91729 0.95402 0.88388 1.23080 0.94629 1.01312 0.98076 1.20973 0.94666 0.95119 0.83234 1.44709 1.48102 1.39465 1.02378 1.19359 1.19665 1.14063 0.83786 0.91258 1.25445 0.99467 0.99169 1.00781 1.70140 1.32219 1.27761 1.29140 0.85119 0.77185 0.77651 0.80004 1.20061 1.21410 1.22017 1.22052 0.91739 0.91505 0.95177 0.92276 0.91813 0.86044 0.88898 0.88031 0.85386 0.75566 0.75750 0.88483 0.89352 0.95509 0.97317 0.94303 0.95302 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 113.37 1.21 1.80 16 2 O -0.30 -9.81 9.99 -86.83 -0.87 -10.68 16 3 C 0.29 9.48 7.85 85.70 0.67 10.15 16 4 N -0.37 -9.92 11.90 -169.98 -2.02 -11.95 16 5 N -0.34 -6.79 3.97 -367.77 -1.46 -8.25 16 6 C 0.09 0.74 11.44 127.77 1.46 2.21 16 7 C 0.15 3.23 10.98 84.31 0.93 4.16 16 8 C -0.33 -10.25 6.14 -20.08 -0.12 -10.38 16 9 C 0.59 21.72 7.81 86.61 0.68 22.40 16 10 O -0.59 -26.00 16.07 1.00 0.02 -25.98 16 11 N -0.70 -23.14 5.18 -439.38 -2.27 -25.41 16 12 C 0.14 5.12 3.43 46.38 0.16 5.28 16 13 H 0.10 3.45 7.54 -2.39 -0.02 3.43 16 14 C -0.13 -4.42 6.55 31.78 0.21 -4.21 16 15 C 0.18 8.44 5.36 86.73 0.47 8.91 16 16 N -0.62 -31.29 3.39 -692.00 -2.35 -33.64 16 17 C -0.24 -13.40 10.28 84.03 0.86 -12.54 16 18 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 19 C -0.06 -3.05 5.49 84.86 0.47 -2.59 16 20 N -0.94 -53.84 10.31 21.65 0.22 -53.62 16 21 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 C 0.12 5.34 6.93 86.86 0.60 5.94 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.23 2.98 7.46 -2.91 -0.02 2.96 16 33 H 0.41 11.81 7.59 -92.71 -0.70 11.11 16 34 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.03 1.31 7.38 -2.39 -0.02 1.29 16 37 H 0.01 0.45 7.51 -2.39 -0.02 0.43 16 38 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -79.82 339.66 1.23 -78.59 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.35 Total: 12.75 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: 7.59 Total: 31.13 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -7.89 Total: -132.87 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.85 Total: -36.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.82 1.23 -78.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015495823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.499 kcal (2) G-P(sol) polarization free energy of solvation -79.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds