Wall clock time and date at job start Tue Mar 31 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35353 * 116.99459 * 2 1 4 4 C 1.38993 * 126.40703 * 95.22792 * 3 2 1 5 5 C 1.46921 * 126.49632 * 359.97438 * 4 3 2 6 6 O 1.21664 * 119.99990 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99925 * 180.02562 * 5 4 3 8 8 C 1.46508 * 119.99878 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.88273 * 328.87966 * 8 7 5 10 10 C 1.55153 * 111.00207 * 205.00298 * 8 7 5 11 11 C 1.54325 * 102.94199 * 277.42599 * 10 8 7 12 12 N 1.47026 * 107.27182 * 337.80841 * 11 10 8 13 13 C 1.36934 * 125.65307 * 178.89330 * 12 11 10 14 14 H 1.07992 * 120.00445 * 174.89410 * 13 12 11 15 15 C 1.38818 * 119.99644 * 354.89982 * 13 12 11 16 16 N 1.31621 * 119.99924 * 7.05942 * 15 13 12 17 17 Si 1.86802 * 119.99950 * 187.05987 * 15 13 12 18 18 H 1.48499 * 109.46968 * 94.98600 * 17 15 13 19 19 H 1.48495 * 109.47122 * 214.98963 * 17 15 13 20 20 H 1.48504 * 109.46814 * 334.98808 * 17 15 13 21 21 C 1.47429 * 108.70100 * 358.93909 * 12 11 10 22 22 C 1.41460 * 107.00925 * 179.97438 * 4 3 2 23 23 N 1.30319 * 108.13294 * 359.73694 * 22 4 3 24 24 N 1.34657 * 126.40415 * 275.17994 * 3 2 1 25 25 C 1.46504 * 125.74489 * 0.02562 * 24 3 2 26 26 H 1.09005 * 109.46716 * 184.96294 * 1 2 3 27 27 H 1.08995 * 109.47450 * 304.96213 * 1 2 3 28 28 H 1.08995 * 109.47257 * 64.96538 * 1 2 3 29 29 H 0.96999 * 120.00157 * 0.02562 * 7 5 4 30 30 H 1.08996 * 110.72612 * 35.78766 * 10 8 7 31 31 H 1.08997 * 110.72403 * 158.88567 * 10 8 7 32 32 H 1.09005 * 109.88375 * 97.22486 * 11 10 8 33 33 H 1.08998 * 109.88404 * 218.39272 * 11 10 8 34 34 H 0.96998 * 119.99310 * 180.02562 * 16 15 13 35 35 H 1.08996 * 110.37180 * 265.29233 * 21 12 11 36 36 H 1.08997 * 110.36389 * 142.96246 * 21 12 11 37 37 H 1.08001 * 125.93388 * 180.02562 * 22 4 3 38 38 H 1.08995 * 109.47129 * 84.82333 * 25 24 3 39 39 H 1.09004 * 109.46767 * 324.82675 * 25 24 3 40 40 H 1.08990 * 109.47205 * 204.83262 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 6 2.5087 1.8949 1.1140 5 6 2.4262 1.4522 2.5125 6 8 1.9099 0.3842 2.7830 7 7 2.9224 2.2291 3.4957 8 6 2.8406 1.7874 4.8902 9 1 1.9531 1.1759 5.0526 10 6 2.8666 2.9985 5.8595 11 6 4.3732 3.3082 5.9855 12 7 5.1023 2.0834 5.6249 13 6 6.4643 1.9467 5.5885 14 1 6.9050 0.9808 5.3906 15 6 7.2785 3.0497 5.8062 16 7 6.7493 4.1941 6.1838 17 14 9.1254 2.9097 5.5631 18 1 9.4801 3.3621 4.1940 19 1 9.8219 3.7601 6.5615 20 1 9.5422 1.4955 5.7408 21 6 4.1240 1.0270 5.3079 22 6 3.0767 3.1030 0.6461 23 7 2.9632 3.1285 -0.6519 24 7 2.3190 1.9626 -1.0794 25 6 2.0025 1.6198 -2.4681 26 1 -0.3633 -1.0239 0.0889 27 1 -0.3634 0.5888 0.8421 28 1 -0.3633 0.4348 -0.9311 29 1 3.3337 3.0807 3.2800 30 1 2.3331 3.8470 5.4312 31 1 2.4437 2.7275 6.8269 32 1 4.6441 4.1149 5.3043 33 1 4.6090 3.5915 7.0112 34 1 7.3183 4.9649 6.3355 35 1 3.9313 0.4121 6.1870 36 1 4.4847 0.4106 4.4845 37 1 3.5303 3.8688 1.2578 38 1 0.9782 1.9179 -2.6916 39 1 2.1068 0.5440 -2.6096 40 1 2.6870 2.1421 -3.1363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016129494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:02 Heat of formation + Delta-G solvation = 43.407449 kcal Electronic energy + Delta-G solvation = -24034.351689 eV Core-core repulsion = 20466.800284 eV Total energy + Delta-G solvation = -3567.551405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60848 -39.06961 -38.24753 -36.99060 -33.73427 -33.37994 -31.69419 -30.03244 -29.12327 -27.86750 -27.02764 -26.72580 -24.42817 -22.82876 -21.29681 -20.36712 -20.00871 -19.59339 -18.34949 -17.00011 -16.63622 -16.51409 -15.91462 -15.44108 -14.87158 -14.66592 -14.57730 -14.31483 -13.91895 -13.77417 -13.58195 -13.13573 -12.90068 -12.89190 -12.28899 -12.11686 -11.86252 -11.74745 -11.44353 -10.89780 -10.87049 -10.63054 -10.42349 -10.24841 -10.07830 -9.89874 -9.64572 -9.57649 -9.46612 -8.78019 -8.59038 -8.36251 -6.76378 -5.68871 -2.99601 1.17450 1.97870 2.15006 3.32074 3.43454 3.49464 3.50821 3.64752 3.79384 4.30255 4.54776 4.77831 4.80855 4.87694 5.03429 5.07520 5.09494 5.24465 5.36324 5.40110 5.50797 5.52446 5.71432 5.86234 5.90285 5.93393 6.27552 6.29979 6.45157 6.56099 6.62249 6.78686 7.16759 7.21285 7.37845 7.58305 7.61515 7.84480 8.05559 8.29587 8.72086 9.26708 9.86830 10.53317 11.43504 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.004205 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.341000 B = 6657.278950 C = 7407.396428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.294 6.294 3 C 0.315 3.685 4 C -0.287 4.287 5 C 0.593 3.407 6 O -0.550 6.550 7 N -0.700 5.700 8 C 0.132 3.868 9 H 0.090 0.910 10 C -0.154 4.154 11 C 0.175 3.825 12 N -0.604 5.604 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.922 5.922 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C 0.124 3.876 22 C 0.096 3.904 23 N -0.281 5.281 24 N -0.374 5.374 25 C 0.095 3.905 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.401 0.599 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.251 0.749 35 H 0.027 0.973 36 H 0.043 0.957 37 H 0.198 0.802 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 -2.643 -14.416 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.203 6.203 3 C 0.142 3.858 4 C -0.303 4.303 5 C 0.380 3.620 6 O -0.429 6.429 7 N -0.349 5.349 8 C 0.026 3.974 9 H 0.108 0.892 10 C -0.192 4.192 11 C 0.050 3.950 12 N -0.331 5.331 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.570 5.570 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.207 1.207 21 C -0.003 4.003 22 C -0.091 4.091 23 N -0.103 5.103 24 N -0.164 5.164 25 C -0.046 4.046 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.235 0.765 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.214 0.786 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.381 -2.916 -15.332 21.222 hybrid contribution 1.028 0.074 0.384 1.100 sum -13.353 -2.842 -14.947 20.244 Atomic orbital electron populations 1.23100 0.77040 1.04512 1.00806 1.86043 1.21126 1.20289 1.92857 1.19305 0.95509 0.84571 0.86436 1.20140 1.17863 0.98580 0.93670 1.16916 0.77994 0.83798 0.83276 1.90762 1.46135 1.22231 1.83798 1.45574 1.60066 1.23015 1.06267 1.22097 0.98929 0.96716 0.79662 0.89216 1.23217 1.00919 0.96865 0.98247 1.21176 0.84377 0.89390 1.00036 1.44483 1.01271 1.07396 1.79924 1.19068 0.80033 0.94646 1.41409 0.90566 1.24766 0.97931 0.95773 1.01871 1.69967 1.33446 1.01241 1.52331 0.86149 0.85336 0.77178 0.77460 1.21703 1.21855 1.20720 1.21959 0.89147 0.91969 0.97203 1.24031 0.96597 0.96675 0.91827 1.77231 1.18243 1.01297 1.13546 1.48944 1.45689 1.14854 1.06905 1.21954 1.02326 1.02509 0.77831 0.87651 0.92201 0.93736 0.76473 0.91608 0.91032 0.93438 0.94015 0.93877 0.95575 0.93828 0.78561 0.90569 0.89210 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.13 101.05 1.12 1.50 16 2 O -0.29 -4.00 9.83 -25.01 -0.25 -4.25 16 3 C 0.31 4.50 6.99 -16.03 -0.11 4.39 16 4 C -0.29 -4.48 6.15 -104.88 -0.64 -5.12 16 5 C 0.59 10.55 7.80 -12.74 -0.10 10.45 16 6 O -0.55 -11.19 16.02 -2.03 -0.03 -11.22 16 7 N -0.70 -12.03 5.18 -52.95 -0.27 -12.31 16 8 C 0.13 2.40 3.43 -65.78 -0.23 2.18 16 9 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 10 C -0.15 -2.73 6.55 -24.90 -0.16 -2.89 16 11 C 0.17 4.07 5.37 -3.06 -0.02 4.05 16 12 N -0.60 -15.30 3.39 -170.07 -0.58 -15.88 16 13 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 14 H 0.08 2.12 7.84 -52.49 -0.41 1.70 16 15 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 16 N -0.92 -26.62 10.36 55.49 0.57 -26.04 16 17 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.12 2.71 6.93 -2.53 -0.02 2.69 16 22 C 0.10 1.31 11.50 -16.97 -0.20 1.12 16 23 N -0.28 -3.85 12.47 30.88 0.39 -3.47 16 24 N -0.37 -4.60 3.99 -67.67 -0.27 -4.87 16 25 C 0.09 0.69 11.38 59.85 0.68 1.37 16 26 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.40 6.45 7.61 -40.82 -0.31 6.14 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 33 H 0.04 1.09 7.61 -51.93 -0.40 0.69 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.20 2.21 7.50 -52.49 -0.39 1.82 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -34.76 340.21 -5.90 -40.66 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.64 Total: 1.99 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 0.08 Total: 13.03 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.16 Total: -62.57 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.28 Total: -15.48 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.76 -5.90 -40.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016129494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.069 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds