Wall clock time and date at job start Tue Mar 31 2020 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35348 * 116.99814 * 2 1 4 4 C 1.38990 * 126.40932 * 95.31969 * 3 2 1 5 5 C 1.46927 * 126.49301 * 359.97438 * 4 3 2 6 6 O 1.21667 * 120.00139 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00068 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99784 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.78124 * 36.79134 * 8 7 5 10 10 C 1.55405 * 110.85149 * 160.08197 * 8 7 5 11 11 C 1.54906 * 101.66596 * 153.69801 * 10 8 7 12 12 N 1.47416 * 104.83274 * 323.07918 * 11 10 8 13 13 C 1.36945 * 125.64777 * 204.16279 * 12 11 10 14 14 H 1.08000 * 120.00176 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99739 * 359.95621 * 13 12 11 16 16 N 1.31615 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99665 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46930 * 60.00358 * 17 15 13 19 19 H 1.48501 * 109.46828 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47022 * 300.00190 * 17 15 13 21 21 C 1.47023 * 108.70549 * 24.12581 * 12 11 10 22 22 C 1.41459 * 107.01065 * 180.23952 * 4 3 2 23 23 N 1.30310 * 108.13413 * 359.55436 * 22 4 3 24 24 N 1.34664 * 126.40518 * 275.29045 * 3 2 1 25 25 C 1.46498 * 125.73930 * 0.06119 * 24 3 2 26 26 H 1.09001 * 109.47100 * 184.89907 * 1 2 3 27 27 H 1.08999 * 109.46788 * 304.89587 * 1 2 3 28 28 H 1.08995 * 109.46895 * 64.89982 * 1 2 3 29 29 H 0.97000 * 119.99880 * 359.97438 * 7 5 4 30 30 H 1.09000 * 110.88991 * 35.63182 * 10 8 7 31 31 H 1.09002 * 111.04460 * 271.83942 * 10 8 7 32 32 H 1.09005 * 110.36858 * 204.23562 * 11 10 8 33 33 H 1.09002 * 110.36389 * 81.91775 * 11 10 8 34 34 H 0.97001 * 119.99710 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.87897 * 118.35698 * 21 12 11 36 36 H 1.08996 * 109.88362 * 239.36759 * 21 12 11 37 37 H 1.08005 * 125.92791 * 179.73764 * 22 4 3 38 38 H 1.09003 * 109.47452 * 94.33870 * 25 24 3 39 39 H 1.09009 * 109.46731 * 214.33208 * 25 24 3 40 40 H 1.08988 * 109.47726 * 334.33414 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5104 1.8940 1.1138 5 6 2.4298 1.4502 2.5121 6 8 1.9131 0.3825 2.7827 7 7 2.9275 2.2264 3.4952 8 6 2.8467 1.7841 4.8895 9 1 2.9928 0.7064 4.9625 10 6 3.8807 2.5393 5.7702 11 6 3.2084 2.4784 7.1644 12 7 1.7667 2.6276 6.8950 13 6 0.8329 3.0920 7.7825 14 1 -0.2035 3.1645 7.4873 15 6 1.2182 3.4692 9.0616 16 7 2.4812 3.3810 9.4212 17 14 -0.0558 4.1021 10.2723 18 1 -1.0838 3.0552 10.5015 19 1 0.6068 4.4359 11.5587 20 1 -0.7030 5.3187 9.7191 21 6 1.4977 2.1960 5.5156 22 6 3.0723 3.1052 0.6465 23 7 2.9574 3.1315 -0.6513 24 7 2.3173 1.9635 -1.0792 25 6 1.9977 1.6222 -2.4676 26 1 -0.3633 -1.0239 0.0878 27 1 -0.3633 0.5879 0.8429 28 1 -0.3633 0.4359 -0.9306 29 1 3.3392 3.0778 3.2795 30 1 3.9957 3.5706 5.4366 31 1 4.8407 2.0230 5.7764 32 1 3.5635 3.2953 7.7928 33 1 3.4081 1.5183 7.6402 34 1 2.7505 3.6450 10.3150 35 1 0.8158 1.3455 5.5196 36 1 1.0613 3.0181 4.9484 37 1 3.5214 3.8732 1.2588 38 1 1.0413 2.0684 -2.7406 39 1 2.7782 2.0055 -3.1248 40 1 1.9357 0.5389 -2.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016129495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:06 Heat of formation + Delta-G solvation = 45.369927 kcal Electronic energy + Delta-G solvation = -23633.512780 eV Core-core repulsion = 20066.046474 eV Total energy + Delta-G solvation = -3567.466306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74101 -39.12181 -38.33865 -36.99930 -33.96859 -33.55666 -31.78851 -30.15975 -29.12342 -27.94081 -27.06200 -26.63816 -24.47603 -22.80400 -21.36680 -20.51598 -20.25355 -19.59883 -18.41803 -17.06774 -16.76185 -16.56446 -15.98901 -15.57607 -14.95655 -14.80978 -14.59909 -14.52338 -13.94665 -13.83695 -13.73871 -13.12711 -12.96311 -12.87157 -12.32808 -12.19444 -11.85112 -11.55757 -11.55599 -11.04487 -10.87584 -10.74696 -10.51766 -10.38189 -10.11603 -9.76982 -9.71556 -9.60911 -9.48425 -8.89110 -8.62002 -8.53917 -6.79240 -5.62005 -3.03178 1.05173 1.86014 1.99305 3.23527 3.43450 3.47131 3.48387 3.53027 3.64459 4.15868 4.53676 4.69219 4.71509 4.78384 4.92270 4.99670 5.02791 5.12129 5.33641 5.37863 5.50167 5.52724 5.64526 5.81347 5.86606 5.90763 6.14583 6.28394 6.47688 6.55506 6.65156 6.83040 7.09750 7.12760 7.23641 7.52588 7.65811 7.83149 7.92260 8.38566 8.59702 9.25809 9.86488 10.51133 11.42151 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003201 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.364921 B = 8744.259946 C = 9024.348314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.296 6.296 3 C 0.318 3.682 4 C -0.290 4.290 5 C 0.591 3.409 6 O -0.540 6.540 7 N -0.712 5.712 8 C 0.134 3.866 9 H 0.091 0.909 10 C -0.149 4.149 11 C 0.153 3.847 12 N -0.604 5.604 13 C -0.220 4.220 14 H 0.076 0.924 15 C -0.012 4.012 16 N -0.924 5.924 17 Si 0.915 3.085 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.129 3.871 22 C 0.092 3.908 23 N -0.281 5.281 24 N -0.373 5.373 25 C 0.094 3.906 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.396 0.604 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.015 0.985 34 H 0.252 0.748 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.197 0.803 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -2.286 -23.100 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.145 3.855 4 C -0.306 4.306 5 C 0.377 3.623 6 O -0.417 6.417 7 N -0.362 5.362 8 C 0.030 3.970 9 H 0.109 0.891 10 C -0.188 4.188 11 C 0.028 3.972 12 N -0.330 5.330 13 C -0.348 4.348 14 H 0.094 0.906 15 C -0.207 4.207 16 N -0.573 5.573 17 Si 0.746 3.254 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.002 3.998 22 C -0.095 4.095 23 N -0.103 5.103 24 N -0.163 5.163 25 C -0.047 4.047 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.213 0.787 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.830 -2.633 -23.840 23.999 hybrid contribution -0.826 0.339 1.065 1.390 sum 0.004 -2.293 -22.774 22.890 Atomic orbital electron populations 1.23142 0.76652 1.04747 1.01007 1.86027 1.21383 1.20212 1.92823 1.19339 0.95193 0.84602 0.86394 1.20150 1.18203 0.98559 0.93644 1.16974 0.78093 0.83965 0.83224 1.90805 1.44666 1.22491 1.83782 1.45799 1.61036 1.22808 1.06604 1.22091 0.97064 0.99481 0.78370 0.89114 1.23365 0.97200 0.99155 0.99094 1.21935 0.82875 1.01625 0.90750 1.44446 1.04598 1.75537 1.08447 1.19047 0.89128 1.34733 0.91938 0.90570 1.24775 0.96586 1.02019 0.97335 1.69760 1.14125 1.54252 1.19168 0.86140 0.80199 0.78681 0.80409 1.21231 1.21577 1.21208 1.21598 0.94233 0.96747 0.87211 1.23965 0.97145 0.96475 0.91889 1.77203 1.18416 1.01202 1.13498 1.48950 1.45708 1.14639 1.07016 1.21976 1.02705 1.02382 0.77655 0.87482 0.91966 0.93628 0.77009 0.91656 0.91709 0.87223 0.96695 0.93684 0.95601 0.95734 0.78678 0.90352 0.88670 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.13 101.05 1.12 1.49 16 2 O -0.30 -3.78 9.74 -24.99 -0.24 -4.02 16 3 C 0.32 4.14 6.98 -16.03 -0.11 4.02 16 4 C -0.29 -4.02 6.15 -104.88 -0.64 -4.66 16 5 C 0.59 9.78 7.79 -12.74 -0.10 9.68 16 6 O -0.54 -10.86 16.11 -2.04 -0.03 -10.89 16 7 N -0.71 -10.92 5.12 -53.13 -0.27 -11.20 16 8 C 0.13 2.51 3.24 -65.97 -0.21 2.30 16 9 H 0.09 1.81 7.70 -51.93 -0.40 1.41 16 10 C -0.15 -2.74 6.71 -24.45 -0.16 -2.90 16 11 C 0.15 3.72 5.89 -2.54 -0.01 3.70 16 12 N -0.60 -15.83 3.39 -170.08 -0.58 -16.41 16 13 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 16 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 17 Si 0.92 22.27 29.55 -169.99 -5.02 17.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.13 2.89 6.98 -3.07 -0.02 2.87 16 22 C 0.09 1.03 11.50 -16.97 -0.20 0.84 16 23 N -0.28 -3.29 12.47 30.88 0.39 -2.90 16 24 N -0.37 -4.05 3.99 -67.67 -0.27 -4.32 16 25 C 0.09 0.57 11.41 59.85 0.68 1.26 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.40 4.82 7.47 -40.82 -0.30 4.52 16 30 H 0.06 1.12 8.01 -51.93 -0.42 0.70 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.02 0.55 8.03 -51.93 -0.42 0.13 16 37 H 0.20 1.50 7.50 -52.48 -0.39 1.11 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.09 0.45 8.03 -51.94 -0.42 0.03 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -35.47 339.22 -5.85 -41.33 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.58 Total: 0.73 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 0.09 Total: 11.74 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.17 Total: -61.24 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.28 Total: -14.92 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.47 -5.85 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016129495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.696 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds