Wall clock time and date at job start Tue Mar 31 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35348 * 116.99814 * 2 1 4 4 C 1.38990 * 126.40932 * 95.31969 * 3 2 1 5 5 C 1.46927 * 126.49301 * 359.97438 * 4 3 2 6 6 O 1.21667 * 120.00139 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00068 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99784 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.78124 * 36.79134 * 8 7 5 10 10 C 1.55405 * 110.85149 * 160.08197 * 8 7 5 11 11 C 1.54906 * 101.66596 * 153.69801 * 10 8 7 12 12 N 1.47416 * 104.83274 * 323.07918 * 11 10 8 13 13 C 1.36945 * 125.64777 * 204.16279 * 12 11 10 14 14 H 1.08000 * 120.00176 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99739 * 359.95621 * 13 12 11 16 16 N 1.31615 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99665 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46930 * 60.00358 * 17 15 13 19 19 H 1.48501 * 109.46828 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47022 * 300.00190 * 17 15 13 21 21 C 1.47023 * 108.70549 * 24.12581 * 12 11 10 22 22 C 1.41459 * 107.01065 * 180.23952 * 4 3 2 23 23 N 1.30310 * 108.13413 * 359.55436 * 22 4 3 24 24 N 1.34664 * 126.40518 * 275.29045 * 3 2 1 25 25 C 1.46498 * 125.73930 * 0.06119 * 24 3 2 26 26 H 1.09001 * 109.47100 * 184.89907 * 1 2 3 27 27 H 1.08999 * 109.46788 * 304.89587 * 1 2 3 28 28 H 1.08995 * 109.46895 * 64.89982 * 1 2 3 29 29 H 0.97000 * 119.99880 * 359.97438 * 7 5 4 30 30 H 1.09000 * 110.88991 * 35.63182 * 10 8 7 31 31 H 1.09002 * 111.04460 * 271.83942 * 10 8 7 32 32 H 1.09005 * 110.36858 * 204.23562 * 11 10 8 33 33 H 1.09002 * 110.36389 * 81.91775 * 11 10 8 34 34 H 0.97001 * 119.99710 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.87897 * 118.35698 * 21 12 11 36 36 H 1.08996 * 109.88362 * 239.36759 * 21 12 11 37 37 H 1.08005 * 125.92791 * 179.73764 * 22 4 3 38 38 H 1.09003 * 109.47452 * 94.33870 * 25 24 3 39 39 H 1.09009 * 109.46731 * 214.33208 * 25 24 3 40 40 H 1.08988 * 109.47726 * 334.33414 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5104 1.8940 1.1138 5 6 2.4298 1.4502 2.5121 6 8 1.9131 0.3825 2.7827 7 7 2.9275 2.2264 3.4952 8 6 2.8467 1.7841 4.8895 9 1 2.9928 0.7064 4.9625 10 6 3.8807 2.5393 5.7702 11 6 3.2084 2.4784 7.1644 12 7 1.7667 2.6276 6.8950 13 6 0.8329 3.0920 7.7825 14 1 -0.2035 3.1645 7.4873 15 6 1.2182 3.4692 9.0616 16 7 2.4812 3.3810 9.4212 17 14 -0.0558 4.1021 10.2723 18 1 -1.0838 3.0552 10.5015 19 1 0.6068 4.4359 11.5587 20 1 -0.7030 5.3187 9.7191 21 6 1.4977 2.1960 5.5156 22 6 3.0723 3.1052 0.6465 23 7 2.9574 3.1315 -0.6513 24 7 2.3173 1.9635 -1.0792 25 6 1.9977 1.6222 -2.4676 26 1 -0.3633 -1.0239 0.0878 27 1 -0.3633 0.5879 0.8429 28 1 -0.3633 0.4359 -0.9306 29 1 3.3392 3.0778 3.2795 30 1 3.9957 3.5706 5.4366 31 1 4.8407 2.0230 5.7764 32 1 3.5635 3.2953 7.7928 33 1 3.4081 1.5183 7.6402 34 1 2.7505 3.6450 10.3150 35 1 0.8158 1.3455 5.5196 36 1 1.0613 3.0181 4.9484 37 1 3.5214 3.8732 1.2588 38 1 1.0413 2.0684 -2.7406 39 1 2.7782 2.0055 -3.1248 40 1 1.9357 0.5389 -2.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016129495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:05 Heat of formation + Delta-G solvation = 18.605965 kcal Electronic energy + Delta-G solvation = -23634.673353 eV Core-core repulsion = 20066.046474 eV Total energy + Delta-G solvation = -3568.626878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63610 -40.51691 -39.22060 -38.69141 -35.55383 -34.47026 -33.58519 -31.27807 -30.80441 -29.14427 -28.13579 -27.67288 -26.37740 -23.94841 -22.31455 -22.22522 -21.56068 -21.09681 -19.44757 -18.85994 -17.93353 -17.50035 -17.33832 -16.75838 -16.54937 -16.02280 -15.74881 -15.70836 -15.43614 -15.14482 -14.66610 -14.53553 -14.15651 -13.73595 -13.58532 -13.57402 -13.42480 -12.99663 -12.93508 -12.68690 -12.52094 -12.37742 -12.15618 -12.04321 -11.80800 -11.40587 -11.32185 -10.90400 -10.73588 -10.50996 -10.13943 -9.69621 -8.89439 -7.76854 -5.21873 0.11728 1.06538 1.08256 1.47877 1.51305 1.57753 2.22645 2.30060 2.52584 2.60038 3.32792 3.37075 3.74708 3.80137 3.93830 4.02303 4.09433 4.17264 4.28690 4.29039 4.33308 4.37092 4.57877 4.61855 4.64624 4.66409 4.79558 4.94984 5.04448 5.06139 5.10636 5.34147 5.45909 5.59661 5.65322 5.80402 6.24591 6.31814 6.37518 6.68784 7.11636 7.34931 7.77325 8.40808 9.24679 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003201 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.364921 B = 8744.259946 C = 9024.348314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.314 3.686 4 C -0.320 4.320 5 C 0.592 3.408 6 O -0.584 6.584 7 N -0.698 5.698 8 C 0.152 3.848 9 H 0.078 0.922 10 C -0.126 4.126 11 C 0.152 3.848 12 N -0.623 5.623 13 C -0.245 4.245 14 H 0.075 0.925 15 C -0.062 4.062 16 N -0.946 5.946 17 Si 0.982 3.018 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.275 1.275 21 C 0.130 3.870 22 C 0.103 3.897 23 N -0.292 5.292 24 N -0.366 5.366 25 C 0.082 3.918 26 H 0.123 0.877 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.415 0.585 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.084 0.916 33 H -0.012 1.012 34 H 0.249 0.751 35 H 0.004 0.996 36 H 0.028 0.972 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -1.287 -25.150 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.139 3.861 4 C -0.335 4.335 5 C 0.380 3.620 6 O -0.464 6.464 7 N -0.349 5.349 8 C 0.046 3.954 9 H 0.096 0.904 10 C -0.165 4.165 11 C 0.027 3.973 12 N -0.350 5.350 13 C -0.374 4.374 14 H 0.093 0.907 15 C -0.255 4.255 16 N -0.595 5.595 17 Si 0.810 3.190 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.201 1.201 21 C 0.003 3.997 22 C -0.084 4.084 23 N -0.114 5.114 24 N -0.155 5.155 25 C -0.057 4.057 26 H 0.141 0.859 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.006 0.994 34 H 0.059 0.941 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.244 0.756 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.981 -1.602 -25.959 26.027 hybrid contribution -0.926 -0.029 1.610 1.858 sum 0.055 -1.632 -24.349 24.403 Atomic orbital electron populations 1.23328 0.75063 1.05752 1.01667 1.85983 1.22957 1.20405 1.92987 1.19481 0.94912 0.84611 0.87091 1.20005 1.20792 1.00416 0.92328 1.17352 0.76989 0.83260 0.84352 1.90779 1.46641 1.24450 1.84567 1.45525 1.60962 1.23553 1.04910 1.21652 0.94868 0.98787 0.80060 0.90431 1.23171 0.97570 1.00847 0.94876 1.21782 0.82639 0.99041 0.93809 1.44730 1.05223 1.75494 1.09551 1.19388 0.89788 1.35221 0.92998 0.90696 1.25613 0.98627 1.02347 0.98908 1.69999 1.15647 1.54688 1.19197 0.85111 0.77807 0.78266 0.77866 1.20839 1.21535 1.20096 1.21666 0.96151 0.95838 0.86016 1.24406 0.96121 0.95970 0.91879 1.77190 1.18816 1.01749 1.13682 1.49272 1.44461 1.13770 1.08043 1.22395 1.04244 1.03623 0.75453 0.85907 0.94163 0.90536 0.74794 0.89522 0.88754 0.89854 0.99385 0.94081 0.97794 0.95362 0.75586 0.88361 0.87209 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.13 113.37 1.26 1.90 16 2 O -0.31 -7.78 9.74 -79.43 -0.77 -8.55 16 3 C 0.31 7.77 6.98 84.44 0.59 8.36 16 4 C -0.32 -8.46 6.15 -20.03 -0.12 -8.58 16 5 C 0.59 19.28 7.79 86.52 0.67 19.95 16 6 O -0.58 -23.88 16.11 2.69 0.04 -23.84 16 7 N -0.70 -20.43 5.12 -440.24 -2.26 -22.69 16 8 C 0.15 5.61 3.24 46.26 0.15 5.76 16 9 H 0.08 3.11 7.70 -2.39 -0.02 3.09 16 10 C -0.13 -4.44 6.71 32.07 0.22 -4.23 16 11 C 0.15 7.51 5.89 86.86 0.51 8.02 16 12 N -0.62 -33.36 3.39 -692.01 -2.35 -35.71 16 13 C -0.25 -14.20 10.27 84.03 0.86 -13.34 16 14 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 15 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 16 N -0.95 -56.23 10.09 21.65 0.22 -56.01 16 17 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.13 5.91 6.98 86.73 0.61 6.52 16 22 C 0.10 2.06 11.50 85.71 0.99 3.05 16 23 N -0.29 -6.12 12.47 -56.23 -0.70 -6.82 16 24 N -0.37 -7.12 3.99 -479.81 -1.91 -9.04 16 25 C 0.08 0.77 11.41 127.77 1.46 2.23 16 26 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.41 8.99 7.47 -92.71 -0.69 8.29 16 30 H 0.09 2.72 8.01 -2.39 -0.02 2.70 16 31 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.08 4.58 5.87 -2.38 -0.01 4.56 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 36 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 37 H 0.23 2.70 7.50 -2.91 -0.02 2.68 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.73 8.14 -2.38 -0.02 0.72 16 40 H 0.10 0.73 8.03 -2.39 -0.02 0.71 16 Total: -1.00 -79.01 339.22 2.32 -76.69 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.37 Total: 11.31 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 7.66 Total: 26.53 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -7.00 Total: -130.26 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.73 Total: -32.39 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -79.01 2.32 -76.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016129495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.295 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds