Wall clock time and date at job start Tue Mar 31 2020 04:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35357 * 116.99925 * 2 1 4 4 C 1.38993 * 126.40648 * 264.71033 * 3 2 1 5 5 C 1.46926 * 126.49708 * 0.02562 * 4 3 2 6 6 O 1.21668 * 119.99678 * 359.71423 * 5 4 3 7 7 N 1.34772 * 120.00109 * 179.71202 * 5 4 3 8 8 C 1.47021 * 125.65130 * 0.02584 * 7 5 4 9 9 C 1.54315 * 107.27617 * 178.90332 * 8 7 5 10 10 C 1.55159 * 102.94319 * 337.80980 * 9 8 7 11 11 H 1.09007 * 110.99912 * 277.42849 * 10 9 8 12 12 N 1.46495 * 111.00699 * 153.57650 * 10 9 8 13 13 C 1.36941 * 119.99937 * 154.99984 * 12 10 9 14 14 H 1.07991 * 119.99904 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99764 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99841 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47410 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47106 * 120.00316 * 17 15 13 20 20 H 1.48501 * 109.47371 * 240.00431 * 17 15 13 21 21 C 1.47426 * 125.64946 * 179.97438 * 7 5 4 22 22 C 1.41464 * 107.00721 * 179.75484 * 4 3 2 23 23 N 1.30316 * 108.13649 * 0.24144 * 22 4 3 24 24 N 1.34661 * 126.40652 * 84.88183 * 3 2 1 25 25 C 1.46500 * 125.73772 * 0.02562 * 24 3 2 26 26 H 1.09003 * 109.47296 * 59.97738 * 1 2 3 27 27 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47509 * 299.97932 * 1 2 3 29 29 H 1.09006 * 109.88266 * 59.48604 * 8 7 5 30 30 H 1.09003 * 110.00842 * 298.39723 * 8 7 5 31 31 H 1.09000 * 110.72226 * 96.16868 * 9 8 7 32 32 H 1.09000 * 110.72496 * 219.44478 * 9 8 7 33 33 H 0.97002 * 119.99662 * 334.99369 * 12 10 9 34 34 H 0.96994 * 120.00492 * 179.97438 * 16 15 13 35 35 H 1.08994 * 110.36735 * 323.00869 * 21 7 5 36 36 H 1.09002 * 110.36295 * 85.21839 * 21 7 5 37 37 H 1.08002 * 125.93243 * 180.21859 * 22 4 3 38 38 H 1.09002 * 109.47344 * 275.43003 * 25 24 3 39 39 H 1.08995 * 109.47844 * 35.43709 * 25 24 3 40 40 H 1.09008 * 109.46999 * 155.43645 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.5098 1.8943 -1.1139 5 6 2.4286 1.4509 -2.5123 6 8 1.9167 0.3806 -2.7823 7 7 2.9211 2.2296 -3.4958 8 6 3.5629 3.5394 -3.3116 9 6 3.9892 4.0413 -4.7072 10 6 4.0716 2.7327 -5.5368 11 1 5.0265 2.2306 -5.3807 12 7 3.8468 2.9981 -6.9599 13 6 4.3581 2.1481 -7.9040 14 1 4.9273 1.2824 -7.5995 15 6 4.1446 2.3993 -9.2524 16 7 3.4513 3.4547 -9.6236 17 14 4.8426 1.2403 -10.5403 18 1 5.5777 0.1386 -9.8685 19 1 3.7337 0.6736 -11.3493 20 1 5.7709 1.9867 -11.4271 21 6 2.9063 1.9087 -4.9347 22 6 3.0718 3.1054 -0.6466 23 7 2.9536 3.1335 0.6509 24 7 2.3201 1.9621 1.0795 25 6 2.0058 1.6181 2.4684 26 1 -0.3634 0.5142 -0.8898 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5135 0.8902 29 1 4.4390 3.4361 -2.6712 30 1 2.8581 4.2406 -2.8648 31 1 3.2379 4.7137 -5.1213 32 1 4.9622 4.5303 -4.6606 33 1 3.3357 3.7759 -7.2333 34 1 3.3024 3.6305 -10.5658 35 1 3.0765 0.8431 -5.0874 36 1 1.9578 2.2084 -5.3804 37 1 3.5212 3.8734 -1.2587 38 1 0.9801 1.9113 2.6922 39 1 2.1155 0.5430 2.6103 40 1 2.6880 2.1441 3.1363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019711798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:29 Heat of formation + Delta-G solvation = 16.143395 kcal Electronic energy + Delta-G solvation = -23667.581558 eV Core-core repulsion = 20098.847895 eV Total energy + Delta-G solvation = -3568.733663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.69568 -40.65935 -39.26018 -38.46333 -35.94708 -34.48487 -33.24656 -31.31623 -30.88128 -29.61208 -28.14520 -27.60071 -25.94309 -24.62625 -22.70921 -22.34525 -21.54062 -20.73228 -19.38760 -18.63753 -18.08825 -17.61759 -17.27600 -16.83268 -16.34337 -16.25651 -15.70235 -15.53751 -15.20036 -15.08986 -15.01368 -14.55936 -14.21539 -13.84735 -13.72646 -13.56723 -13.48693 -13.05452 -12.94456 -12.88474 -12.49779 -12.35741 -12.29161 -12.04820 -11.74575 -11.53996 -11.36387 -11.02570 -10.92259 -10.51602 -9.91825 -9.52252 -9.04813 -7.95981 -5.25384 0.08932 1.04164 1.06338 1.48353 1.49723 1.59207 2.02263 2.25188 2.55811 2.56950 3.30967 3.37772 3.69395 3.76169 3.96824 4.03362 4.07358 4.15252 4.27791 4.30317 4.31881 4.36613 4.39528 4.48266 4.59742 4.61343 4.64373 4.74504 4.89598 5.02414 5.04884 5.23363 5.27573 5.35833 5.42743 5.55440 6.22996 6.26415 6.36532 6.61135 7.21003 7.33642 8.05454 8.29814 9.26952 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.003223 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.970225 B = 8686.526156 C = 9284.522237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.315 3.685 4 C -0.316 4.316 5 C 0.598 3.402 6 O -0.592 6.592 7 N -0.609 5.609 8 C 0.097 3.903 9 C -0.129 4.129 10 C 0.165 3.835 11 H 0.065 0.935 12 N -0.722 5.722 13 C -0.245 4.245 14 H 0.074 0.926 15 C -0.069 4.069 16 N -0.965 5.965 17 Si 0.969 3.031 18 H -0.269 1.269 19 H -0.296 1.296 20 H -0.290 1.290 21 C 0.096 3.904 22 C 0.089 3.911 23 N -0.288 5.288 24 N -0.365 5.365 25 C 0.082 3.918 26 H 0.039 0.961 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.379 0.621 34 H 0.252 0.748 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.231 0.769 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 0.661 27.208 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.139 3.861 4 C -0.332 4.332 5 C 0.390 3.610 6 O -0.474 6.474 7 N -0.341 5.341 8 C -0.025 4.025 9 C -0.168 4.168 10 C 0.054 3.946 11 H 0.084 0.916 12 N -0.361 5.361 13 C -0.377 4.377 14 H 0.092 0.908 15 C -0.262 4.262 16 N -0.615 5.615 17 Si 0.799 3.201 18 H -0.193 1.193 19 H -0.223 1.223 20 H -0.217 1.217 21 C -0.030 4.030 22 C -0.097 4.097 23 N -0.111 5.111 24 N -0.154 5.154 25 C -0.057 4.057 26 H 0.058 0.942 27 H 0.143 0.857 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.211 0.789 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.247 0.753 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.441 0.295 28.233 28.443 hybrid contribution -0.470 -0.953 -2.042 2.302 sum -3.911 -0.658 26.191 26.489 Atomic orbital electron populations 1.23330 0.74992 1.05914 1.01564 1.85983 1.23073 1.20387 1.92994 1.19412 0.94996 0.84636 0.87009 1.19922 1.20663 1.00583 0.92019 1.17075 0.77297 0.82712 0.83930 1.90755 1.47971 1.24251 1.84444 1.48227 1.58712 1.21007 1.06180 1.22588 0.98374 0.83250 0.98277 1.22901 1.03660 0.96838 0.93360 1.21485 0.94670 0.95005 0.83456 0.91649 1.42429 1.63880 1.29679 1.00100 1.19652 1.26148 1.04448 0.87468 0.90795 1.25507 1.01780 0.99829 0.99081 1.69796 1.46242 1.29876 1.15567 0.85138 0.77308 0.78429 0.79272 1.19317 1.22290 1.21683 1.22951 1.00615 0.99926 0.79499 1.24965 0.96410 0.96393 0.91899 1.77215 1.18828 1.01504 1.13576 1.49295 1.44499 1.13598 1.07971 1.22417 1.04221 1.03731 0.75363 0.94199 0.85684 0.90571 0.88320 0.88383 0.90519 0.87751 0.78853 0.93896 0.93910 0.93442 0.75306 0.88251 0.87938 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 11.13 113.37 1.26 1.89 16 2 O -0.32 -8.00 9.83 -79.54 -0.78 -8.79 16 3 C 0.31 8.04 6.99 84.44 0.59 8.63 16 4 C -0.32 -8.90 6.11 -20.03 -0.12 -9.02 16 5 C 0.60 21.19 7.83 86.52 0.68 21.87 16 6 O -0.59 -25.81 16.64 2.69 0.04 -25.76 16 7 N -0.61 -19.76 3.33 -816.24 -2.72 -22.47 16 8 C 0.10 2.17 4.98 86.73 0.43 2.60 16 9 C -0.13 -3.48 6.60 31.78 0.21 -3.27 16 10 C 0.16 6.29 3.71 46.38 0.17 6.46 16 11 H 0.07 2.54 8.09 -2.38 -0.02 2.52 16 12 N -0.72 -35.34 5.24 -316.39 -1.66 -37.00 16 13 C -0.25 -13.50 9.96 84.03 0.84 -12.67 16 14 H 0.07 3.98 7.83 -2.92 -0.02 3.95 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 16 N -0.96 -58.13 13.06 21.65 0.28 -57.85 16 17 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 C 0.10 3.79 6.60 86.85 0.57 4.37 16 22 C 0.09 1.90 10.44 85.71 0.89 2.80 16 23 N -0.29 -6.15 12.48 -56.22 -0.70 -6.85 16 24 N -0.36 -7.19 3.99 -479.79 -1.91 -9.11 16 25 C 0.08 0.75 11.38 127.77 1.45 2.21 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.10 1.69 6.83 -2.38 -0.02 1.67 16 30 H 0.10 1.67 6.99 -2.39 -0.02 1.65 16 31 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.38 19.59 7.76 -92.71 -0.72 18.88 16 34 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.23 3.34 4.47 -2.91 -0.01 3.33 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -78.01 338.12 2.38 -75.64 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.35 Total: 21.55 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 7.45 Total: 22.38 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -6.71 Total: -133.28 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.74 Total: -34.55 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.01 2.38 -75.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019711798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.779 kcal (2) G-P(sol) polarization free energy of solvation -78.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds