Wall clock time and date at job start Tue Mar 31 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00326 * 2 1 4 4 O 1.21738 * 120.00308 * 186.50402 * 3 2 1 5 5 C 1.46376 * 119.99569 * 6.50257 * 3 2 1 6 6 C 1.36714 * 126.82902 * 8.06645 * 5 3 2 7 7 N 1.33229 * 107.96657 * 179.97438 * 6 5 3 8 8 C 1.31538 * 109.75562 * 359.97438 * 7 6 5 9 9 O 1.35206 * 125.48970 * 179.97438 * 8 7 6 10 10 N 1.34945 * 109.01748 * 359.72486 * 8 7 6 11 11 C 1.46497 * 126.54332 * 180.30402 * 10 8 7 12 12 C 1.46504 * 119.99887 * 180.02562 * 2 1 3 13 13 H 1.09003 * 110.88401 * 183.87702 * 12 2 1 14 14 C 1.55154 * 111.00338 * 60.00045 * 12 2 1 15 15 C 1.54323 * 102.94254 * 206.38393 * 14 12 2 16 16 N 1.47024 * 107.27001 * 22.19266 * 15 14 12 17 17 C 1.36936 * 125.64799 * 181.02278 * 16 15 14 18 18 H 1.07997 * 120.00014 * 175.11992 * 17 16 15 19 19 C 1.38804 * 120.00065 * 355.11905 * 17 16 15 20 20 N 1.31624 * 120.00223 * 156.73116 * 19 17 16 21 21 Si 1.86805 * 120.00022 * 336.45257 * 19 17 16 22 22 H 1.48495 * 109.47192 * 185.54807 * 21 19 17 23 23 H 1.48504 * 109.47040 * 305.54798 * 21 19 17 24 24 H 1.48495 * 109.46971 * 65.54756 * 21 19 17 25 25 C 1.47423 * 108.70046 * 1.28556 * 16 15 14 26 26 H 1.08999 * 109.46773 * 275.88187 * 1 2 3 27 27 H 1.08998 * 109.47217 * 35.87455 * 1 2 3 28 28 H 1.08998 * 109.47238 * 155.87859 * 1 2 3 29 29 H 1.07997 * 126.02048 * 0.02562 * 6 5 3 30 30 H 0.96697 * 114.00160 * 89.97425 * 9 8 7 31 31 H 1.09008 * 109.47465 * 274.76587 * 11 10 8 32 32 H 1.08995 * 109.47401 * 34.76478 * 11 10 8 33 33 H 1.09002 * 109.47170 * 154.76894 * 11 10 8 34 34 H 1.09001 * 110.72312 * 88.01970 * 14 12 2 35 35 H 1.09000 * 110.87482 * 324.81844 * 14 12 2 36 36 H 1.08998 * 109.88419 * 262.77599 * 15 14 12 37 37 H 1.09005 * 110.01092 * 141.68042 * 15 14 12 38 38 H 0.96998 * 119.99905 * 354.70971 * 20 19 17 39 39 H 1.08999 * 110.36898 * 94.48468 * 25 16 15 40 40 H 1.09005 * 110.36334 * 216.80445 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3504 1.1706 -0.1194 5 6 1.4141 2.4308 0.1436 6 6 0.0880 2.5860 0.4379 7 7 -0.1740 3.8917 0.4779 8 6 0.9221 4.5730 0.2237 9 8 1.0166 5.9212 0.1830 10 7 1.9382 3.7098 0.0154 11 6 3.3282 4.0563 -0.2911 12 6 2.1974 -1.2688 -0.0006 13 1 3.2717 -1.0973 0.0684 14 6 1.8483 -2.1119 -1.2554 15 6 2.1072 -3.5581 -0.7830 16 7 2.0279 -3.5586 0.6850 17 6 2.2184 -4.6468 1.4942 18 1 2.2163 -4.5284 2.5677 19 6 2.4142 -5.9019 0.9347 20 7 3.0344 -6.8387 1.6205 21 14 1.7907 -6.2640 -0.7886 22 1 2.0028 -7.7003 -1.1001 23 1 0.3415 -5.9492 -0.8669 24 1 2.5320 -5.4301 -1.7685 25 6 1.7029 -2.1949 1.1413 26 1 -0.3633 0.1053 1.0223 27 1 -0.3633 0.8327 -0.6022 28 1 -0.3633 -0.9379 -0.4200 29 1 -0.6220 1.7904 0.6087 30 1 1.2359 6.3259 1.0334 31 1 3.4359 4.2110 -1.3647 32 1 3.5997 4.9704 0.2367 33 1 3.9834 3.2451 0.0266 34 1 2.5037 -1.8548 -2.0874 35 1 0.8030 -1.9787 -1.5343 36 1 3.0990 -3.8799 -1.1008 37 1 1.3510 -4.2262 -1.1954 38 1 3.4220 -6.6306 2.4850 39 1 0.6272 -2.0878 1.2808 40 1 2.2308 -1.9691 2.0679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033335012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:21 Heat of formation + Delta-G solvation = 58.747483 kcal Electronic energy + Delta-G solvation = -24071.365573 eV Core-core repulsion = 20504.479361 eV Total energy + Delta-G solvation = -3566.886212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59847 -39.90184 -37.88831 -37.52051 -35.47846 -34.20541 -32.48879 -30.36529 -29.21259 -28.10959 -27.56538 -27.00174 -24.21851 -22.97371 -22.05566 -20.97673 -20.33052 -19.41716 -18.84856 -17.54639 -17.31918 -17.03116 -16.50309 -15.86407 -15.33304 -15.15186 -14.72998 -14.47930 -14.30501 -13.67646 -13.49391 -13.21438 -13.08978 -13.01304 -12.80335 -12.58473 -12.45137 -12.24942 -11.75772 -11.48789 -11.10443 -11.07006 -10.55347 -10.53966 -10.13971 -10.09096 -9.94425 -9.51454 -9.06914 -8.83237 -8.68130 -8.49428 -7.12441 -6.35427 -3.21861 0.90801 1.84948 2.33056 2.92135 3.08490 3.41746 3.46132 3.50356 3.71276 4.23045 4.44898 4.62661 4.65424 4.86464 4.92226 4.93987 4.99196 5.11659 5.15893 5.24363 5.34828 5.38724 5.46657 5.58060 5.65463 5.79633 5.83285 6.03549 6.12770 6.14860 6.32009 6.34407 6.49708 6.66270 6.72572 7.12149 7.26135 7.45733 7.61443 7.98957 8.30648 9.00457 9.53453 10.18227 11.14480 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.003420 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.446107 B = 8185.877544 C = 8318.129671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.585 5.585 3 C 0.594 3.406 4 O -0.546 6.546 5 C -0.072 4.072 6 C 0.037 3.963 7 N -0.488 5.488 8 C 0.392 3.608 9 O -0.440 6.440 10 N -0.428 5.428 11 C 0.063 3.937 12 C 0.127 3.873 13 H 0.113 0.887 14 C -0.139 4.139 15 C 0.119 3.881 16 N -0.608 5.608 17 C -0.329 4.329 18 H 0.080 0.920 19 C -0.017 4.017 20 N -0.919 5.919 21 Si 1.054 2.946 22 H -0.300 1.300 23 H -0.297 1.297 24 H -0.281 1.281 25 C 0.132 3.868 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.204 0.796 30 H 0.404 0.596 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.029 0.971 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 23.348 -4.187 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.316 5.316 3 C 0.382 3.618 4 O -0.425 6.425 5 C -0.188 4.188 6 C -0.117 4.117 7 N -0.217 5.217 8 C 0.093 3.907 9 O -0.241 6.241 10 N -0.121 5.121 11 C -0.078 4.078 12 C 0.024 3.976 13 H 0.131 0.869 14 C -0.178 4.178 15 C -0.006 4.006 16 N -0.337 5.337 17 C -0.455 4.455 18 H 0.098 0.902 19 C -0.217 4.217 20 N -0.559 5.559 21 Si 0.887 3.113 22 H -0.228 1.228 23 H -0.225 1.225 24 H -0.208 1.208 25 C 0.004 3.996 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.220 0.780 30 H 0.261 0.739 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.430 22.527 -5.765 23.671 hybrid contribution 0.901 1.191 1.463 2.091 sum -3.529 23.717 -4.301 24.361 Atomic orbital electron populations 1.22453 0.79600 1.04365 1.02275 1.47366 1.07108 1.05146 1.71970 1.16602 0.86203 0.82028 0.76953 1.90787 1.13565 1.86964 1.51188 1.20591 0.95469 0.85237 1.17528 1.23578 0.93358 0.93552 1.01224 1.70378 1.24686 1.04926 1.21719 1.20295 0.83401 0.83520 1.03484 1.84822 1.91194 1.10694 1.37386 1.45645 1.10217 1.05566 1.50683 1.22331 0.78786 1.03842 1.02878 1.22552 0.97720 0.80590 0.96767 0.86931 1.22962 1.01678 0.95845 0.97330 1.21935 0.99272 0.93603 0.85795 1.44759 1.83491 1.04824 1.00584 1.20103 1.48898 0.86194 0.90343 0.90228 1.25745 0.98781 0.91673 1.05513 1.70905 1.33973 1.35901 1.15170 0.84130 0.76265 0.74486 0.76438 1.22808 1.22548 1.20828 1.21813 0.97492 0.85300 0.94955 0.91346 0.89914 0.89612 0.78012 0.73886 0.90064 0.89691 0.86890 0.90881 0.91004 0.93355 0.95324 0.92709 0.95343 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 7.25 59.84 0.43 0.98 16 2 N -0.58 -7.88 2.91 -173.00 -0.50 -8.38 16 3 C 0.59 8.48 7.62 -12.98 -0.10 8.38 16 4 O -0.55 -9.21 14.20 5.16 0.07 -9.13 16 5 C -0.07 -0.89 6.73 -81.98 -0.55 -1.44 16 6 C 0.04 0.41 9.77 -17.50 -0.17 0.24 16 7 N -0.49 -6.00 11.22 -14.62 -0.16 -6.17 16 8 C 0.39 4.29 9.01 -89.59 -0.81 3.48 16 9 O -0.44 -3.51 13.53 -17.31 -0.23 -3.74 16 10 N -0.43 -4.75 3.20 -122.12 -0.39 -5.15 16 11 C 0.06 0.54 10.83 59.85 0.65 1.19 16 12 C 0.13 2.10 3.44 -65.67 -0.23 1.87 16 13 H 0.11 2.06 7.05 -51.93 -0.37 1.70 16 14 C -0.14 -2.27 6.49 -24.90 -0.16 -2.43 16 15 C 0.12 2.52 4.57 -3.06 -0.01 2.51 16 16 N -0.61 -14.57 3.34 -169.94 -0.57 -15.14 16 17 C -0.33 -9.30 10.49 -15.06 -0.16 -9.45 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C -0.02 -0.49 5.47 -17.43 -0.10 -0.59 16 20 N -0.92 -28.69 13.70 55.49 0.76 -27.92 16 21 Si 1.05 26.08 24.72 -169.99 -4.20 21.88 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.30 -7.08 7.09 56.52 0.40 -6.68 16 24 H -0.28 -6.31 5.20 56.52 0.29 -6.02 16 25 C 0.13 2.53 6.79 -2.42 -0.02 2.52 16 26 H 0.07 0.58 7.28 -51.93 -0.38 0.20 16 27 H 0.08 0.67 5.46 -51.93 -0.28 0.39 16 28 H 0.09 0.85 6.36 -51.93 -0.33 0.52 16 29 H 0.20 1.70 4.44 -52.49 -0.23 1.47 16 30 H 0.40 1.06 9.06 45.56 0.41 1.47 16 31 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.11 1.16 6.15 -51.93 -0.32 0.84 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.02 6.48 -51.93 -0.34 0.68 16 36 H 0.05 1.09 6.83 -51.93 -0.35 0.73 16 37 H 0.03 0.64 4.25 -51.93 -0.22 0.42 16 38 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 39 H 0.03 0.52 6.95 -51.93 -0.36 0.15 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -36.09 314.35 -5.86 -41.94 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.15 Total: -0.18 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.22 Total: 7.25 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.87 Total: -62.76 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.16 Total: -12.88 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.20 Total: 21.88 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.09 -5.86 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033335012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.688 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds