Wall clock time and date at job start Tue Mar 31 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00326 * 2 1 4 4 O 1.21738 * 120.00308 * 186.50402 * 3 2 1 5 5 C 1.46376 * 119.99569 * 6.50257 * 3 2 1 6 6 C 1.36714 * 126.82902 * 8.06645 * 5 3 2 7 7 N 1.33229 * 107.96657 * 179.97438 * 6 5 3 8 8 C 1.31538 * 109.75562 * 359.97438 * 7 6 5 9 9 O 1.35206 * 125.48970 * 179.97438 * 8 7 6 10 10 N 1.34945 * 109.01748 * 359.72486 * 8 7 6 11 11 C 1.46497 * 126.54332 * 180.30402 * 10 8 7 12 12 C 1.46504 * 119.99887 * 180.02562 * 2 1 3 13 13 H 1.09003 * 110.88401 * 183.87702 * 12 2 1 14 14 C 1.55154 * 111.00338 * 60.00045 * 12 2 1 15 15 C 1.54323 * 102.94254 * 206.38393 * 14 12 2 16 16 N 1.47024 * 107.27001 * 22.19266 * 15 14 12 17 17 C 1.36936 * 125.64799 * 181.02278 * 16 15 14 18 18 H 1.07997 * 120.00014 * 175.11992 * 17 16 15 19 19 C 1.38804 * 120.00065 * 355.11905 * 17 16 15 20 20 N 1.31624 * 120.00223 * 156.73116 * 19 17 16 21 21 Si 1.86805 * 120.00022 * 336.45257 * 19 17 16 22 22 H 1.48495 * 109.47192 * 185.54807 * 21 19 17 23 23 H 1.48504 * 109.47040 * 305.54798 * 21 19 17 24 24 H 1.48495 * 109.46971 * 65.54756 * 21 19 17 25 25 C 1.47423 * 108.70046 * 1.28556 * 16 15 14 26 26 H 1.08999 * 109.46773 * 275.88187 * 1 2 3 27 27 H 1.08998 * 109.47217 * 35.87455 * 1 2 3 28 28 H 1.08998 * 109.47238 * 155.87859 * 1 2 3 29 29 H 1.07997 * 126.02048 * 0.02562 * 6 5 3 30 30 H 0.96697 * 114.00160 * 89.97425 * 9 8 7 31 31 H 1.09008 * 109.47465 * 274.76587 * 11 10 8 32 32 H 1.08995 * 109.47401 * 34.76478 * 11 10 8 33 33 H 1.09002 * 109.47170 * 154.76894 * 11 10 8 34 34 H 1.09001 * 110.72312 * 88.01970 * 14 12 2 35 35 H 1.09000 * 110.87482 * 324.81844 * 14 12 2 36 36 H 1.08998 * 109.88419 * 262.77599 * 15 14 12 37 37 H 1.09005 * 110.01092 * 141.68042 * 15 14 12 38 38 H 0.96998 * 119.99905 * 354.70971 * 20 19 17 39 39 H 1.08999 * 110.36898 * 94.48468 * 25 16 15 40 40 H 1.09005 * 110.36334 * 216.80445 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3504 1.1706 -0.1194 5 6 1.4141 2.4308 0.1436 6 6 0.0880 2.5860 0.4379 7 7 -0.1740 3.8917 0.4779 8 6 0.9221 4.5730 0.2237 9 8 1.0166 5.9212 0.1830 10 7 1.9382 3.7098 0.0154 11 6 3.3282 4.0563 -0.2911 12 6 2.1974 -1.2688 -0.0006 13 1 3.2717 -1.0973 0.0684 14 6 1.8483 -2.1119 -1.2554 15 6 2.1072 -3.5581 -0.7830 16 7 2.0279 -3.5586 0.6850 17 6 2.2184 -4.6468 1.4942 18 1 2.2163 -4.5284 2.5677 19 6 2.4142 -5.9019 0.9347 20 7 3.0344 -6.8387 1.6205 21 14 1.7907 -6.2640 -0.7886 22 1 2.0028 -7.7003 -1.1001 23 1 0.3415 -5.9492 -0.8669 24 1 2.5320 -5.4301 -1.7685 25 6 1.7029 -2.1949 1.1413 26 1 -0.3633 0.1053 1.0223 27 1 -0.3633 0.8327 -0.6022 28 1 -0.3633 -0.9379 -0.4200 29 1 -0.6220 1.7904 0.6087 30 1 1.2359 6.3259 1.0334 31 1 3.4359 4.2110 -1.3647 32 1 3.5997 4.9704 0.2367 33 1 3.9834 3.2451 0.0266 34 1 2.5037 -1.8548 -2.0874 35 1 0.8030 -1.9787 -1.5343 36 1 3.0990 -3.8799 -1.1008 37 1 1.3510 -4.2262 -1.1954 38 1 3.4220 -6.6306 2.4850 39 1 0.6272 -2.0878 1.2808 40 1 2.2308 -1.9691 2.0679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033335012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:21 Heat of formation + Delta-G solvation = 27.980985 kcal Electronic energy + Delta-G solvation = -24072.699708 eV Core-core repulsion = 20504.479361 eV Total energy + Delta-G solvation = -3568.220347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42384 -41.04331 -39.19189 -38.33538 -36.68929 -35.09871 -34.42782 -31.83067 -30.61305 -29.31433 -28.54673 -27.80579 -25.93799 -24.13346 -22.87787 -22.61003 -21.64062 -20.49502 -19.63363 -19.53432 -18.32668 -17.95928 -17.58819 -16.92639 -16.75057 -16.30686 -15.91553 -15.50667 -15.33474 -15.21284 -15.00470 -14.37421 -14.16746 -13.98703 -13.92845 -13.76415 -13.72137 -13.23605 -13.13403 -13.02905 -12.57661 -12.43771 -12.24637 -11.71768 -11.50411 -11.42208 -11.04830 -10.97235 -10.89565 -10.63417 -9.82672 -9.58335 -9.13622 -8.66167 -5.43635 0.04725 1.03560 1.45144 1.49758 1.54118 1.75178 1.92427 2.11284 2.59344 2.79499 3.06732 3.28661 3.38287 3.69956 3.77002 3.79167 3.88762 4.05511 4.15596 4.22364 4.27069 4.32372 4.40504 4.58917 4.60410 4.70966 4.78916 4.86598 4.89703 4.97545 5.06703 5.15803 5.26402 5.40523 5.52109 5.57285 6.08844 6.21919 6.52082 6.65706 6.80886 6.94104 7.44419 8.07652 8.85702 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.003420 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.446107 B = 8185.877544 C = 8318.129671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.582 5.582 3 C 0.593 3.407 4 O -0.581 6.581 5 C -0.097 4.097 6 C 0.052 3.948 7 N -0.515 5.515 8 C 0.403 3.597 9 O -0.441 6.441 10 N -0.433 5.433 11 C 0.062 3.938 12 C 0.143 3.857 13 H 0.089 0.911 14 C -0.124 4.124 15 C 0.109 3.891 16 N -0.630 5.630 17 C -0.318 4.318 18 H 0.047 0.953 19 C -0.076 4.076 20 N -0.958 5.958 21 Si 1.095 2.905 22 H -0.314 1.314 23 H -0.278 1.278 24 H -0.245 1.245 25 C 0.131 3.869 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.227 0.773 30 H 0.428 0.572 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.248 0.752 39 H 0.053 0.947 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 26.006 -6.077 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.312 5.312 3 C 0.383 3.617 4 O -0.463 6.463 5 C -0.213 4.213 6 C -0.103 4.103 7 N -0.245 5.245 8 C 0.104 3.896 9 O -0.245 6.245 10 N -0.126 5.126 11 C -0.079 4.079 12 C 0.038 3.962 13 H 0.107 0.893 14 C -0.162 4.162 15 C -0.015 4.015 16 N -0.358 5.358 17 C -0.447 4.447 18 H 0.065 0.935 19 C -0.269 4.269 20 N -0.601 5.601 21 Si 0.921 3.079 22 H -0.243 1.243 23 H -0.205 1.205 24 H -0.169 1.169 25 C 0.005 3.995 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.243 0.757 30 H 0.290 0.710 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.365 25.274 -7.644 27.162 hybrid contribution 1.502 0.550 2.187 2.710 sum -4.863 25.824 -5.457 26.839 Atomic orbital electron populations 1.22773 0.77060 1.05667 1.03993 1.47302 1.08478 1.03721 1.71725 1.16852 0.85849 0.82761 0.76216 1.90774 1.15150 1.87494 1.52857 1.20359 0.95937 0.84983 1.19976 1.23987 0.93098 0.93828 0.99347 1.70424 1.25464 1.05469 1.23125 1.20427 0.83082 0.84389 1.01739 1.84785 1.91144 1.09142 1.39456 1.45797 1.10987 1.05260 1.50522 1.22439 0.77427 1.04367 1.03690 1.22042 0.96781 0.81635 0.95716 0.89297 1.22908 1.04091 0.92007 0.97225 1.22071 0.98394 0.97103 0.83970 1.44776 1.83810 1.05301 1.01915 1.19986 1.47083 0.87948 0.89647 0.93498 1.27075 0.98935 0.91878 1.09042 1.71017 1.36766 1.37059 1.15260 0.83667 0.77123 0.74033 0.73046 1.24301 1.20451 1.16944 1.21936 0.98563 0.83700 0.95321 0.89624 0.87751 0.88975 0.75709 0.70989 0.89467 0.86579 0.88975 0.89086 0.87887 0.95044 0.94915 0.94324 0.92906 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 7.25 127.77 0.93 1.65 16 2 N -0.58 -14.26 2.91 -819.45 -2.38 -16.64 16 3 C 0.59 16.07 7.62 86.36 0.66 16.72 16 4 O -0.58 -19.46 14.20 -4.47 -0.06 -19.52 16 5 C -0.10 -2.20 6.73 39.80 0.27 -1.93 16 6 C 0.05 0.99 9.77 84.12 0.82 1.81 16 7 N -0.52 -11.23 11.22 -313.65 -3.52 -14.75 16 8 C 0.40 7.73 9.01 179.99 1.62 9.35 16 9 O -0.44 -5.65 13.53 -84.87 -1.15 -6.80 16 10 N -0.43 -8.70 3.20 -652.00 -2.09 -10.79 16 11 C 0.06 0.95 10.83 127.77 1.38 2.34 16 12 C 0.14 4.48 3.44 46.46 0.16 4.64 16 13 H 0.09 3.24 7.05 -2.39 -0.02 3.22 16 14 C -0.12 -3.61 6.49 31.78 0.21 -3.40 16 15 C 0.11 4.38 4.57 86.73 0.40 4.78 16 16 N -0.63 -29.85 3.34 -691.57 -2.31 -32.16 16 17 C -0.32 -18.44 10.49 84.03 0.88 -17.56 16 18 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 19 C -0.08 -4.52 5.47 84.86 0.46 -4.05 16 20 N -0.96 -61.98 13.70 21.65 0.30 -61.68 16 21 Si 1.09 52.20 24.72 68.60 1.70 53.90 16 22 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 23 H -0.28 -12.26 7.09 99.48 0.70 -11.55 16 24 H -0.24 -10.19 5.20 99.48 0.52 -9.67 16 25 C 0.13 4.91 6.79 86.93 0.59 5.50 16 26 H 0.09 1.09 7.28 -2.39 -0.02 1.07 16 27 H 0.10 1.24 5.46 -2.39 -0.01 1.22 16 28 H 0.09 1.39 6.36 -2.39 -0.02 1.37 16 29 H 0.23 2.92 4.44 -2.91 -0.01 2.90 16 30 H 0.43 0.80 9.06 -74.06 -0.67 0.13 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.87 6.15 -2.39 -0.01 1.85 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.10 2.40 6.48 -2.39 -0.02 2.39 16 36 H 0.03 1.37 6.83 -2.39 -0.02 1.35 16 37 H 0.03 1.33 4.25 -2.38 -0.01 1.32 16 38 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 39 H 0.05 1.76 6.95 -2.39 -0.02 1.75 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -81.19 314.35 -0.95 -82.13 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.20 Total: 6.47 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 8.38 Total: 19.85 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -10.01 Total: -136.03 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.21 Total: -26.33 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.70 Total: 53.90 kcal Total: -81.19 -0.95 -82.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033335012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.116 kcal (2) G-P(sol) polarization free energy of solvation -81.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds