Wall clock time and date at job start Tue Mar 31 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00275 * 2 1 4 4 O 1.21630 * 119.99958 * 183.42822 * 3 2 1 5 5 C 1.47255 * 119.99780 * 3.43206 * 3 2 1 6 6 C 1.36249 * 126.16548 * 173.80352 * 5 3 2 7 7 N 1.36342 * 106.88908 * 179.90312 * 6 5 3 8 8 C 1.46498 * 126.19882 * 180.13695 * 7 6 5 9 9 C 1.36172 * 107.59937 * 0.35479 * 7 6 5 10 10 O 1.35453 * 125.55257 * 179.80650 * 9 7 6 11 11 N 1.30706 * 108.89760 * 359.77979 * 9 7 6 12 12 C 1.46497 * 120.00046 * 179.97438 * 2 1 3 13 13 H 1.08996 * 110.88771 * 183.88222 * 12 2 1 14 14 C 1.55158 * 111.00449 * 59.99890 * 12 2 1 15 15 C 1.54323 * 102.94346 * 277.43232 * 14 12 2 16 16 N 1.47016 * 107.27030 * 337.80149 * 15 14 12 17 17 C 1.36938 * 125.65016 * 178.89616 * 16 15 14 18 18 H 1.08001 * 120.00411 * 175.00441 * 17 16 15 19 19 C 1.38811 * 119.99681 * 355.00508 * 17 16 15 20 20 N 1.31620 * 120.00232 * 6.27638 * 19 17 16 21 21 Si 1.86801 * 120.00150 * 186.27732 * 19 17 16 22 22 H 1.48501 * 109.47092 * 94.98675 * 21 19 17 23 23 H 1.48501 * 109.47428 * 214.99309 * 21 19 17 24 24 H 1.48507 * 109.46835 * 334.99329 * 21 19 17 25 25 C 1.47423 * 108.70521 * 358.94590 * 16 15 14 26 26 H 1.09004 * 109.46882 * 84.28227 * 1 2 3 27 27 H 1.08995 * 109.47192 * 204.28322 * 1 2 3 28 28 H 1.09004 * 109.46963 * 324.28537 * 1 2 3 29 29 H 1.07997 * 126.55370 * 0.03263 * 6 5 3 30 30 H 1.09002 * 109.46894 * 270.23650 * 8 7 6 31 31 H 1.08994 * 109.47056 * 30.23865 * 8 7 6 32 32 H 1.08995 * 109.47231 * 150.24411 * 8 7 6 33 33 H 0.96700 * 114.00565 * 269.99363 * 10 9 7 34 34 H 1.09007 * 110.71990 * 35.79298 * 14 12 2 35 35 H 1.08996 * 110.71979 * 158.88169 * 14 12 2 36 36 H 1.09002 * 109.88545 * 97.22312 * 15 14 12 37 37 H 1.09000 * 109.87969 * 218.23364 * 15 14 12 38 38 H 0.96997 * 120.00448 * 180.02562 * 20 19 17 39 39 H 1.08999 * 110.36970 * 265.28580 * 25 16 15 40 40 H 1.08998 * 110.36962 * 142.96561 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3536 1.1681 -0.0630 5 6 1.4047 2.4413 0.0763 6 6 1.9561 3.6807 0.2038 7 7 0.9248 4.5720 0.2332 8 6 1.0419 6.0270 0.3569 9 6 -0.2341 3.8642 0.1317 10 8 -1.4816 4.3920 0.1277 11 7 0.0533 2.5925 0.0382 12 6 2.1975 -1.2687 0.0006 13 1 3.2717 -1.0972 0.0694 14 6 1.8484 -2.1130 -1.2535 15 6 0.5310 -2.8068 -0.8473 16 7 0.4793 -2.8192 0.6219 17 6 -0.5412 -3.3278 1.3803 18 1 -0.4493 -3.3626 2.4558 19 6 -1.6938 -3.7987 0.7666 20 7 -1.7578 -3.8716 -0.5460 21 14 -3.1541 -4.3291 1.8037 22 1 -4.1084 -3.1983 1.9299 23 1 -3.8322 -5.4788 1.1528 24 1 -2.6827 -4.7318 3.1532 25 6 1.7074 -2.1923 1.1436 26 1 -0.3633 0.1024 -1.0226 27 1 -0.3633 -0.9367 0.4226 28 1 -0.3633 0.8344 0.5999 29 1 3.0089 3.9129 0.2671 30 1 1.0322 6.3040 1.4111 31 1 1.9768 6.3561 -0.0966 32 1 0.2038 6.5036 -0.1515 33 1 -1.8771 4.4733 1.0064 34 1 1.6944 -1.4704 -2.1204 35 1 2.6286 -2.8474 -1.4534 36 1 -0.3184 -2.2504 -1.2435 37 1 0.5164 -3.8274 -1.2297 38 1 -2.5633 -4.2003 -0.9748 39 1 2.4567 -2.9523 1.3649 40 1 1.4850 -1.6067 2.0356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033387418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:28 Heat of formation + Delta-G solvation = 47.619734 kcal Electronic energy + Delta-G solvation = -24423.167610 eV Core-core repulsion = 20855.798863 eV Total energy + Delta-G solvation = -3567.368747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26562 -39.40942 -37.56396 -37.09669 -34.56278 -33.80443 -31.97578 -29.38718 -29.08416 -27.92052 -27.17057 -25.70555 -24.39674 -23.00855 -21.60170 -20.39519 -19.98230 -18.87274 -18.24137 -17.13438 -16.82740 -16.56790 -15.75178 -15.51947 -14.81320 -14.62383 -14.57830 -14.34450 -13.84188 -13.66097 -13.17992 -13.00178 -12.73870 -12.44921 -12.08099 -11.85066 -11.78718 -11.56937 -11.33006 -10.87198 -10.86322 -10.62467 -10.25517 -10.06911 -10.01268 -9.87438 -9.83145 -9.59672 -9.18141 -8.63509 -8.56136 -7.92270 -6.73460 -5.68494 -3.01740 1.48523 2.06953 2.30532 3.37878 3.43090 3.48536 3.50333 3.73480 3.79998 4.36902 4.53273 4.54513 4.70099 4.98871 5.03009 5.33573 5.49791 5.51253 5.62960 5.72923 5.82705 5.99081 6.08932 6.28138 6.36988 6.41775 6.54112 6.58630 6.65014 6.74278 6.80320 7.14267 7.29738 7.40732 7.61160 7.67463 7.70933 7.88542 8.06128 8.28753 8.64885 9.25110 9.84939 10.51289 11.42692 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.004656 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.960646 B = 6012.065008 C = 7099.121958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.569 5.569 3 C 0.593 3.407 4 O -0.562 6.562 5 C -0.033 4.033 6 C 0.035 3.965 7 N -0.467 5.467 8 C 0.069 3.931 9 C 0.369 3.631 10 O -0.440 6.440 11 N -0.438 5.438 12 C 0.122 3.878 13 H 0.099 0.901 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.601 5.601 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.126 3.874 26 H 0.042 0.958 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.194 0.806 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 19.532 2.035 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.298 5.298 3 C 0.380 3.620 4 O -0.442 6.442 5 C -0.162 4.162 6 C -0.102 4.102 7 N -0.162 5.162 8 C -0.073 4.073 9 C 0.069 3.931 10 O -0.240 6.240 11 N -0.168 5.168 12 C 0.018 3.982 13 H 0.117 0.883 14 C -0.194 4.194 15 C 0.049 3.951 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.207 1.207 25 C -0.001 4.001 26 H 0.061 0.939 27 H 0.136 0.864 28 H 0.104 0.896 29 H 0.211 0.789 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.258 0.742 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.883 18.945 1.290 19.606 hybrid contribution -0.633 0.511 0.970 1.266 sum 4.250 19.456 2.260 20.042 Atomic orbital electron populations 1.22645 0.77057 1.06710 1.02081 1.47570 1.08560 1.04372 1.69304 1.16936 0.85903 0.82186 0.76944 1.90736 1.12946 1.87146 1.53400 1.20515 0.89176 0.94031 1.12439 1.22571 0.93878 0.88131 1.05622 1.45875 1.06845 1.08440 1.55018 1.22102 1.05041 0.76602 1.03586 1.20673 0.80873 0.85121 1.06461 1.84888 1.22251 1.82275 1.34632 1.71348 1.13787 1.12375 1.19306 1.22281 0.96121 0.82606 0.97209 0.88310 1.23234 1.00751 0.98635 0.96770 1.21236 0.91833 0.98285 0.83723 1.44595 1.17548 1.68824 1.01884 1.19031 0.92711 1.34214 0.89968 0.90461 1.24790 0.98048 1.01438 0.95765 1.69983 1.27591 1.51752 1.07052 0.86156 0.83040 0.77774 0.79139 1.21594 1.21857 1.20733 1.21895 0.90094 0.93369 0.94732 0.93907 0.86395 0.89562 0.78937 0.90271 0.89158 0.89034 0.74240 0.91945 0.91474 0.92807 0.94251 0.93747 0.95139 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 7.97 59.85 0.48 1.66 16 2 N -0.57 -11.30 2.91 -172.80 -0.50 -11.80 16 3 C 0.59 11.24 7.66 -12.59 -0.10 11.14 16 4 O -0.56 -11.36 16.27 5.25 0.09 -11.27 16 5 C -0.03 -0.53 6.66 -83.06 -0.55 -1.08 16 6 C 0.03 0.42 11.30 -16.26 -0.18 0.24 16 7 N -0.47 -4.71 3.16 -125.78 -0.40 -5.11 16 8 C 0.07 0.34 11.11 59.85 0.66 1.00 16 9 C 0.37 4.68 9.03 -89.16 -0.81 3.88 16 10 O -0.44 -4.41 13.55 -18.05 -0.24 -4.65 16 11 N -0.44 -7.12 7.80 -11.21 -0.09 -7.21 16 12 C 0.12 2.43 3.66 -65.78 -0.24 2.18 16 13 H 0.10 1.89 7.03 -51.93 -0.37 1.53 16 14 C -0.15 -3.12 6.48 -24.90 -0.16 -3.28 16 15 C 0.17 4.24 4.32 -3.07 -0.01 4.22 16 16 N -0.60 -15.12 1.87 -170.08 -0.32 -15.43 16 17 C -0.23 -6.32 9.79 -15.06 -0.15 -6.46 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 20 N -0.92 -26.53 10.35 55.49 0.57 -25.96 16 21 Si 0.91 21.92 29.56 -169.99 -5.02 16.89 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.13 2.70 6.44 -2.53 -0.02 2.68 16 26 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 27 H 0.12 2.82 4.37 -51.93 -0.23 2.60 16 28 H 0.09 1.71 5.26 -51.93 -0.27 1.44 16 29 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 1.97 9.06 45.56 0.41 2.38 16 34 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.44 6.33 -51.93 -0.33 1.11 16 37 H 0.04 1.06 7.62 -51.93 -0.40 0.67 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -34.37 325.66 -6.71 -41.08 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.53 Total: 2.56 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -1.17 Total: 15.99 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.73 Total: -65.51 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.16 Total: -15.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.37 -6.71 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033387418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.699 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds