Wall clock time and date at job start Tue Mar 31 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00614 * 2 1 4 4 O 1.21629 * 120.00684 * 174.35512 * 3 2 1 5 5 C 1.47253 * 119.99404 * 354.63143 * 3 2 1 6 6 C 1.36253 * 126.16126 * 173.24697 * 5 3 2 7 7 N 1.36345 * 106.88225 * 179.97438 * 6 5 3 8 8 C 1.46501 * 126.19206 * 180.02562 * 7 6 5 9 9 C 1.36165 * 107.60303 * 0.02562 * 7 6 5 10 10 O 1.35457 * 125.54585 * 180.02562 * 9 7 6 11 11 N 1.30700 * 108.89913 * 359.72084 * 9 7 6 12 12 C 1.46504 * 119.99658 * 179.97438 * 2 1 3 13 13 H 1.09007 * 110.63893 * 181.68712 * 12 2 1 14 14 C 1.55155 * 110.72138 * 305.02367 * 12 2 1 15 15 C 1.54907 * 101.57891 * 153.86722 * 14 12 2 16 16 N 1.47418 * 104.83289 * 322.98783 * 15 14 12 17 17 C 1.36941 * 125.65052 * 204.09461 * 16 15 14 18 18 H 1.07995 * 120.00483 * 165.99837 * 17 16 15 19 19 C 1.38815 * 119.99800 * 345.99518 * 17 16 15 20 20 N 1.31613 * 120.00140 * 358.60748 * 19 17 16 21 21 Si 1.86803 * 119.99923 * 178.60802 * 19 17 16 22 22 H 1.48496 * 109.47306 * 94.98026 * 21 19 17 23 23 H 1.48500 * 109.47080 * 214.98392 * 21 19 17 24 24 H 1.48499 * 109.46779 * 334.98246 * 21 19 17 25 25 C 1.47018 * 108.70375 * 24.13617 * 16 15 14 26 26 H 1.09001 * 109.46931 * 86.21343 * 1 2 3 27 27 H 1.08995 * 109.47180 * 206.22109 * 1 2 3 28 28 H 1.09004 * 109.46447 * 326.21641 * 1 2 3 29 29 H 1.07992 * 126.55611 * 0.02562 * 6 5 3 30 30 H 1.09003 * 109.47242 * 90.00623 * 8 7 6 31 31 H 1.09002 * 109.46907 * 210.00216 * 8 7 6 32 32 H 1.08992 * 109.47625 * 330.00523 * 8 7 6 33 33 H 0.96705 * 114.00035 * 90.00584 * 10 9 7 34 34 H 1.09001 * 111.00214 * 271.93834 * 14 12 2 35 35 H 1.08995 * 111.00576 * 35.79049 * 14 12 2 36 36 H 1.09004 * 110.36460 * 204.15088 * 15 14 12 37 37 H 1.09004 * 110.46114 * 81.88194 * 15 14 12 38 38 H 0.97005 * 120.00509 * 179.97438 * 20 19 17 39 39 H 1.09003 * 109.88149 * 239.52191 * 25 16 15 40 40 H 1.09001 * 109.88537 * 118.35661 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3509 1.1697 0.1036 5 6 1.4076 2.4396 -0.1193 6 6 1.9417 3.6878 -0.0046 7 7 0.9206 4.5734 -0.1831 8 6 1.0259 6.0342 -0.1458 9 6 -0.2147 3.8542 -0.4022 10 8 -1.4456 4.3741 -0.6245 11 7 0.0779 2.5808 -0.3695 12 6 2.1974 -1.2688 0.0006 13 1 3.2726 -1.0918 0.0305 14 6 1.7506 -2.1601 1.1894 15 6 2.0637 -3.5780 0.6498 16 7 1.7322 -3.5173 -0.7854 17 6 1.4001 -4.5867 -1.5737 18 1 0.9577 -4.4245 -2.5454 19 6 1.6324 -5.8792 -1.1239 20 7 2.1968 -6.0765 0.0486 21 14 1.1438 -7.3386 -2.1827 22 1 2.3138 -7.7850 -2.9807 23 1 0.6852 -8.4506 -1.3118 24 1 0.0437 -6.9402 -3.0973 25 6 1.8182 -2.1188 -1.2304 26 1 -0.3633 0.0679 -1.0254 27 1 -0.3633 -0.9219 0.4540 28 1 -0.3632 0.8542 0.5715 29 1 2.9762 3.9293 0.1896 30 1 1.2392 6.4087 -1.1470 31 1 0.0856 6.4573 0.2078 32 1 1.8311 6.3233 0.5294 33 1 -1.6419 4.5352 -1.5576 34 1 2.3372 -1.9435 2.0821 35 1 0.6849 -2.0434 1.3862 36 1 1.4429 -4.3204 1.1514 37 1 3.1193 -3.8130 0.7858 38 1 2.3587 -6.9798 0.3632 39 1 0.8541 -1.7944 -1.6220 40 1 2.5848 -2.0207 -1.9991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033387420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:31 Heat of formation + Delta-G solvation = 12.831299 kcal Electronic energy + Delta-G solvation = -23773.184705 eV Core-core repulsion = 20204.307419 eV Total energy + Delta-G solvation = -3568.877287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.23084 -40.88903 -38.92086 -38.17117 -36.28468 -35.14751 -33.94482 -31.15726 -30.23827 -29.36212 -28.03912 -27.67727 -26.41233 -24.23168 -22.45584 -22.15184 -21.59857 -20.25161 -19.28443 -18.90308 -18.46813 -17.62226 -17.12594 -16.72127 -16.60788 -16.06219 -15.88517 -15.50757 -15.28035 -15.17098 -14.48312 -14.38370 -13.94881 -13.76020 -13.58691 -13.54436 -13.42584 -13.04180 -12.87293 -12.85936 -12.70168 -12.38928 -12.15896 -11.98460 -11.84164 -11.54282 -11.33561 -10.91953 -10.73125 -10.66861 -9.77943 -9.43571 -8.85351 -7.87249 -5.26309 0.46579 1.08209 1.43906 1.47283 1.49498 1.58870 1.93870 2.36854 2.50700 2.79191 3.32537 3.57517 3.69877 3.76661 3.87530 3.96738 4.08623 4.25278 4.36574 4.38964 4.43622 4.55809 4.69254 4.73171 4.77844 4.87431 4.88145 4.99861 5.04205 5.15156 5.31011 5.44324 5.57525 5.59119 5.67762 5.70394 6.20628 6.38129 6.63755 6.67125 7.07570 7.14158 7.73064 8.41168 9.24183 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.034616 B = 0.003204 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.669771 B = 8736.212356 C = 9135.417964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.589 5.589 3 C 0.596 3.404 4 O -0.579 6.579 5 C -0.077 4.077 6 C 0.064 3.936 7 N -0.455 5.455 8 C 0.060 3.940 9 C 0.378 3.622 10 O -0.441 6.441 11 N -0.479 5.479 12 C 0.142 3.858 13 H 0.091 0.909 14 C -0.135 4.135 15 C 0.183 3.817 16 N -0.621 5.621 17 C -0.247 4.247 18 H 0.078 0.922 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.982 3.018 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.132 3.868 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.217 0.783 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.425 0.575 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.000 1.000 38 H 0.250 0.750 39 H 0.037 0.963 40 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 28.354 0.008 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.319 5.319 3 C 0.386 3.614 4 O -0.460 6.460 5 C -0.205 4.205 6 C -0.076 4.076 7 N -0.148 5.148 8 C -0.080 4.080 9 C 0.076 3.924 10 O -0.245 6.245 11 N -0.210 5.210 12 C 0.037 3.963 13 H 0.110 0.890 14 C -0.175 4.175 15 C 0.057 3.943 16 N -0.348 5.348 17 C -0.376 4.376 18 H 0.096 0.904 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.810 3.190 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.192 1.192 25 C 0.006 3.994 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.233 0.767 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.285 0.715 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.776 27.670 0.508 28.271 hybrid contribution 0.421 -0.546 -0.934 1.161 sum -5.355 27.125 -0.427 27.651 Atomic orbital electron populations 1.21907 0.77217 1.02905 1.02445 1.47644 1.08346 1.04550 1.71351 1.17314 0.85778 0.82784 0.75512 1.90748 1.14445 1.87471 1.53360 1.20072 0.90620 0.93383 1.16400 1.22927 0.95082 0.87438 1.02180 1.46073 1.06637 1.09928 1.52199 1.22531 1.06603 0.72886 1.05937 1.20500 0.82364 0.84604 1.04898 1.84859 1.22847 1.82199 1.34562 1.71012 1.13458 1.15513 1.21062 1.21841 0.96721 0.82245 0.95447 0.89046 1.23215 1.01894 0.95291 0.97059 1.21170 0.96524 0.92769 0.83816 1.44663 1.81323 1.02076 1.06699 1.19390 1.33606 0.85003 0.99570 0.90399 1.25770 1.00627 1.00154 0.98876 1.70134 1.48659 1.20318 1.20446 0.85015 0.77804 0.78542 0.77648 1.21402 1.21699 1.19174 1.21579 0.97993 0.84968 0.94887 0.92751 0.91754 0.88646 0.76686 0.88088 0.87799 0.87216 0.71478 0.90016 0.90273 0.93690 0.98222 0.94086 0.94555 0.96729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.01 8.11 127.77 1.04 4.05 16 2 N -0.59 -20.83 2.88 -820.01 -2.36 -23.19 16 3 C 0.60 20.65 7.65 86.61 0.66 21.31 16 4 O -0.58 -22.86 16.27 -4.12 -0.07 -22.93 16 5 C -0.08 -2.11 6.57 40.40 0.27 -1.84 16 6 C 0.06 1.20 11.30 83.53 0.94 2.14 16 7 N -0.46 -6.18 3.16 -662.76 -2.09 -8.28 16 8 C 0.06 0.18 11.11 127.77 1.42 1.60 16 9 C 0.38 6.92 9.03 179.84 1.62 8.54 16 10 O -0.44 -5.45 13.55 -87.55 -1.19 -6.64 16 11 N -0.48 -12.23 8.06 -303.16 -2.44 -14.67 16 12 C 0.14 5.76 3.36 46.18 0.16 5.92 16 13 H 0.09 3.97 7.00 -2.38 -0.02 3.96 16 14 C -0.14 -5.50 6.60 31.98 0.21 -5.28 16 15 C 0.18 9.47 5.41 86.86 0.47 9.94 16 16 N -0.62 -33.88 3.39 -692.01 -2.35 -36.23 16 17 C -0.25 -14.40 10.24 84.03 0.86 -13.54 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.06 -3.54 5.46 84.86 0.46 -3.08 16 20 N -0.95 -58.14 10.58 21.65 0.23 -57.91 16 21 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.13 6.09 6.88 86.73 0.60 6.69 16 26 H 0.05 1.68 8.03 -2.39 -0.02 1.66 16 27 H 0.06 2.03 6.11 -2.39 -0.01 2.02 16 28 H 0.10 2.78 5.81 -2.39 -0.01 2.77 16 29 H 0.22 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.42 0.91 9.06 -74.05 -0.67 0.24 16 34 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.08 3.02 6.12 -2.39 -0.01 3.00 16 36 H 0.04 2.56 6.94 -2.39 -0.02 2.54 16 37 H 0.00 -0.01 8.05 -2.38 -0.02 -0.03 16 38 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.04 1.62 7.03 -2.39 -0.02 1.61 16 40 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -79.82 329.53 0.86 -78.95 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.40 Total: 5.77 kcal Atomic # 6 Polarization: 27.75 SS G_CDS: 8.71 Total: 36.45 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -9.02 Total: -140.28 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.25 Total: -29.57 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.82 0.86 -78.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033387420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.783 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds